Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001731

Physical Location & Seq

Genomic Coordinates Forward (+)

9183082 .. 9184060

Gene Structure 979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG106400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCAAGTGGCTTATGGTTTGTGTTTTGCACTTAAACTCAGTGATGAGATTGGATTTGTTCATCCATCCCTGTTTGTCAACTTGAATGAAGAGGCATCCTCATCATCTGATGGTATTAGTAATGTGGTGTGCTCAGCAGATGGGAGTGCAGTGTTTTGGAATAGGGATCATAAGTTGGGAATTTCGACGGATGTTCTTATTCCATTATATAAGGAAGCTAAGCGCGCGCTGATGGCAGCAAATCGACAATATAAGGCACTTAATTGCGTAACTAGGGTTGAGATCTTTGTAAGTGCATCGTTATCTTTGGATAACAGTATTGAAAGTGAAGTCATGAAGCATAGCAGGGCTGTTTTGTTAGCGAGTTCTGATTTTGGCACTGCTTGGCATTCCAGGAAGATGGTGTTGTTAAAGAAGCAAGAGCTCTCAATTTTATTGGATGAACTTGTATTCTCAGCGCTTGTTCTTTCATATGCACCTAAATCTGAGCATGCTTGGAGCCACAGGCGATGGGTCATCAAGTTAATTGCTAGAAAGTGTTCAACTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0018342 GO:0019538 GO:0032991 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:0097354 GO:1901564 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPTA

Protein Analysis

183

Amino Acids

20.36

Weight (kDa)

8.68

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPTA	PF01239	146 - 174	2.4e-07	Protein prenyltransferase alpha subunit repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001731)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10095 AT1G10095 AT1G10095 AT1G10095
fragaria_vesca	FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921 FvH4_6g01921
malus_domestica	MD04G1230400.v1.1 MD12G1248000.v1.1 MD12G1248100.v1.1 MD12G1248600.v1.1 MD12G1248900.v1.1
prunus_persica	Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1 Prupe.6G350300_v2.0.a1
pyrus_communis	pycom04g20430 pycom12g22820 pycom12g22870
rosa_chinensis	RchiOBHm_Chr3g0449661
rosa_laevigata	RLG00000021254 RLG00000025810
rosa_multiflora	Rmu_co8329731.1_g000001 Rmu_sc0007357.1_g000001 Rmu_sc0009629.1_g000011 Rmu_sc0010999.1_g000002
rosa_roxburghii	Rroxscaffold_6G00427560
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh2BG103900 Rh2CG106400 Rh2DG102200 Rh3AG020700 Rh3BG021400 Rh3CG019900 Rh3DG021200 Rh5CG118600
rosa_wichuraiana	Rw3G001710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	225, 227
AclWI	GGATC	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	180
AfeI	AGCGCT	1 cut(s)	459
AgsI	TTSAA	3 cut(s)	85, 323, 543
AjnI	CCWGG	1 cut(s)	392
AluBI	AGCT	2 cut(s)	218, 424
AluI	AGCT	2 cut(s)	218, 424
Alw21I	GWGCWC	2 cut(s)	134, 426
AlwI	GGATC	1 cut(s)	174
Aor51HI	AGCGCT	1 cut(s)	459
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	538
AspLEI	GCGC	4 cut(s)	225, 227, 229, 460
BanII	GRGCYC	1 cut(s)	426
Bbv12I	GWGCWC	2 cut(s)	134, 426
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	6 cut(s)	73, 104, 134, 226, 394, 504
BciT130I	CCWGG	1 cut(s)	394
BfaI	CTAG	2 cut(s)	273, 531
BfoI	RGCGCY	1 cut(s)	461
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	1 cut(s)	237
BlpI	GCTNAGC	2 cut(s)	133, 219
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	394
BmiI	GGNNCC	1 cut(s)	500
BmrFI	CCNGG	1 cut(s)	394
BmsI	GCATC	2 cut(s)	104, 305
BplI	GAGNNNNNCTC	2 cut(s)	83, 115
Bpu1102I	GCTNAGC	2 cut(s)	133, 219
BseBI	CCWGG	1 cut(s)	394
BseGI	GGATG	5 cut(s)	61, 65, 95, 196, 445
BseMII	CTCAG	4 cut(s)	52, 147, 468, 477
BsePI	GCGCGC	2 cut(s)	223, 225
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	168
Bsh1236I	CGCG	2 cut(s)	225, 227
BsiHKAI	GWGCWC	2 cut(s)	134, 426
BsmI	GAATGC	1 cut(s)	388
Bsp1286I	GDGCHC	2 cut(s)	134, 426
Bsp143I	GATC	2 cut(s)	166, 282
Bsp1720I	GCTNAGC	2 cut(s)	133, 219
BspCNI	CTCAG	4 cut(s)	51, 146, 467, 478
BspFNI	CGCG	2 cut(s)	225, 227
BspHI	TCATGA	1 cut(s)	333
BspLI	GGNNCC	1 cut(s)	500
BspPI	GGATC	1 cut(s)	174
BssHII	GCGCGC	2 cut(s)	223, 225
BssMI	GATC	2 cut(s)	166, 282
Bst2UI	CCWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	225, 227, 492
BstDEI	CTNAG	5 cut(s)	38, 133, 219, 454, 486
BstF5I	GGATG	5 cut(s)	61, 65, 95, 196, 445
BstFNI	CGCG	2 cut(s)	225, 227
BstH2I	RGCGCY	1 cut(s)	461
BstHHI	GCGC	4 cut(s)	225, 227, 229, 460
BstKTI	GATC	2 cut(s)	169, 285
BstMBI	GATC	2 cut(s)	166, 282
BstMWI	GCNNNNNNNGC	2 cut(s)	224, 233
BstNI	CCWGG	1 cut(s)	394
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	1 cut(s)	392
BstUI	CGCG	2 cut(s)	225, 227
BstV1I	GCAGC	1 cut(s)	248
BstX2I	RGATCY	1 cut(s)	282
BstXI	CCANNNNNNTGG	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	523
BtsCI	GGATG	5 cut(s)	61, 65, 95, 196, 445
BtsI	GCAGTG	2 cut(s)	156, 378
BtsIMutI	CAGTG	3 cut(s)	46, 156, 378
Cac8I	GCNNGC	3 cut(s)	225, 227, 492
CciI	TCATGA	1 cut(s)	333
CfoI	GCGC	4 cut(s)	225, 227, 229, 460
CviAII	CATG	2 cut(s)	334, 491
CviJI	RGCY	5 cut(s)	11, 218, 350, 424, 501
CviKI_1	RGCY	5 cut(s)	11, 218, 350, 424, 501
DdeI	CTNAG	5 cut(s)	38, 133, 219, 454, 486
DpnI	GATC	2 cut(s)	168, 284
DpnII	GATC	2 cut(s)	166, 282
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	424
Eco24I	GRGCYC	1 cut(s)	426
Eco47III	AGCGCT	1 cut(s)	459
Eco53kI	GAGCTC	1 cut(s)	424
EcoICRI	GAGCTC	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	392
EcoT38I	GRGCYC	1 cut(s)	426
FaeI	CATG	2 cut(s)	337, 494
FatI	CATG	2 cut(s)	333, 490
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	5 cut(s)	48, 52, 82, 203, 452
FriOI	GRGCYC	1 cut(s)	426
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	2 cut(s)	273, 531
GlaI	GCGC	4 cut(s)	224, 226, 228, 459
GluI	GCNGC	1 cut(s)	237
HaeII	RGCGCY	1 cut(s)	461
HhaI	GCGC	4 cut(s)	225, 227, 229, 460
Hin1II	CATG	2 cut(s)	337, 494
Hin6I	GCGC	4 cut(s)	223, 225, 227, 458
HinP1I	GCGC	4 cut(s)	223, 225, 227, 458
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	3 cut(s)	109, 370, 487
Hpy188III	TCNNGA	1 cut(s)	334
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	1 cut(s)	190
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	5 cut(s)	4, 29, 149, 296, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	224, 233
HpyF3I	CTNAG	5 cut(s)	38, 133, 219, 454, 486
Hsp92II	CATG	2 cut(s)	337, 494
HspAI	GCGC	4 cut(s)	223, 225, 227, 458
Kzo9I	GATC	2 cut(s)	166, 282
LmnI	GCTCC	1 cut(s)	498
LpnPI	CCDG	5 cut(s)	83, 331, 379, 406, 490
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	2 cut(s)	104, 305
MaeI	CTAG	2 cut(s)	273, 531
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	2 cut(s)	168, 284
MboI	GATC	2 cut(s)	166, 282
MboII	GAAGA	2 cut(s)	101, 409
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	2 cut(s)	134, 426
MluCI	AATT	4 cut(s)	180, 262, 429, 525
MnlI	CCTC	2 cut(s)	85, 109
MroXI	GAANNNNTTC	1 cut(s)	538
MseI	TTAA	4 cut(s)	33, 261, 410, 524
MspR9I	CCNGG	1 cut(s)	394
Mva1269I	GAATGC	1 cut(s)	388
MvaI	CCWGG	1 cut(s)	394
MvnI	CGCG	2 cut(s)	225, 227
MwoI	GCNNNNNNNGC	2 cut(s)	224, 233
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	2 cut(s)	166, 282
NlaIII	CATG	2 cut(s)	337, 494
NlaIV	GGNNCC	1 cut(s)	500
NspI	RCATGY	1 cut(s)	494
PaeI	GCATGC	1 cut(s)	494
PagI	TCATGA	1 cut(s)	333
PauI	GCGCGC	2 cut(s)	223, 225
PctI	GAATGC	1 cut(s)	388
PdmI	GAANNNNTTC	1 cut(s)	538
PfoI	TCCNGGA	1 cut(s)	392
PkrI	GCNGC	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	392
PspN4I	GGNNCC	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	282
PteI	GCGCGC	2 cut(s)	223, 225
SacI	GAGCTC	1 cut(s)	426
SaqAI	TTAA	4 cut(s)	33, 261, 410, 524
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	2 cut(s)	166, 282
ScrFI	CCNGG	1 cut(s)	394
SduI	GDGCHC	2 cut(s)	134, 426
SetI	ASST	3 cut(s)	220, 426, 481
SfaNI	GCATC	2 cut(s)	104, 305
SphI	GCATGC	1 cut(s)	494
Sse9I	AATT	4 cut(s)	180, 262, 429, 525
SspMI	CTAG	2 cut(s)	273, 531
SstI	GAGCTC	1 cut(s)	426
StyD4I	CCNGG	1 cut(s)	392
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	2 cut(s)	185, 244
TasI	AATT	4 cut(s)	180, 262, 429, 525
Tru1I	TTAA	4 cut(s)	33, 261, 410, 524
Tru9I	TTAA	4 cut(s)	33, 261, 410, 524
TscAI	CASTG	3 cut(s)	46, 156, 385
TseI	GCWGC	1 cut(s)	236
TspDTI	ATGAA	5 cut(s)	50, 102, 350, 456, 459
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	3 cut(s)	46, 156, 385
XapI	RAATTY	1 cut(s)	180
XceI	RCATGY	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	538
XspI	CTAG	2 cut(s)	273, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.