AT1G11170

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001643
Physical Location & Seq
Forward (+)
3740664 .. 3744675
4012 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G11170.2

Sequence Viewer

Length: 1317 bp
ATGATACATGGTTTGCCATCTATGAAGTCTATCAAATCATTGAAGTCACTTGTTAAAAGAAAAACCAATGCTCAAGAAGTGAGTAAATCCGGGTGGAAAATGAAGCCCTTTTTGGCTCTCATGTGTACAGCTCTTTTGATCTTTTGGTATAAGACCACAAATATTCAGTTTGAACAAACAGAGATAGAAGAAACAGATTATCCTTTTGACATGGCTAAGGAATCTGAAGCAGTTAACGATAAATTAAAAGGCTTGCCTCGTGGAATCATACAGTCTAGATCAGATCTTGAATTAAAGCCTCTCTGGTCTAGAGGTAGTCTGAGGTCAAAGGGTGTGGAAATGACTAACCGTAACTTGTTGGCAATACCCGTAGGACTTAAGCAAAAGGGTAACGTCGACGCTCTTGTAAAGAAGTTTCTTCCCGCGAATTTCACGATTGTTCTTTTCCATTATGATGGAAATATGGATAAATGGTGGGATCTGGAGTGGAGTTCAAAATCCATACATATAGTTGCACAAAACCAGACTAAATGGTGGTTTGCAAAACGATTCCTCCATCCGGATGTTGTATCCATTTATGATTATATTTTTCTTTGGGACGAGGATCTTGGAGTAGAGAATTTCAATCCAGAGAGATATTTGAAGATAGTTAAATCAGTGGGACTGGAGATATCTCAACCGGCTTTGGACCACAACTCGACTGAAATACACCATAAAATCACTCTCCGTTCTAAAACAAAGAAATTTCATAGGAGAGTTTACATCAATAGAGGCCATAAAAGATGTTCTAATACTAGCTCAGATCCTCCTTGCACCGGATTTGTTGAAGGAATGGCTCCGGTGTTTTCGAAAGCTGCTTGGCTTTGCACTTGGAATCTTATACAGAATGATTTGGTTCATGGATGGGGAATGGATATGAAACTTGGGTACTGCGCACAGGGAGACCGAACGAAAAACGTAGGGATTGTGGATAGCGAGTATATCCTTCATCAAGGCATTCAAACTTTAGGTGAAAGTGTTCCTGAGAAGAAGAAGACGGCTCGTGATGTTGGGACCAGGAGACAAGGCCATACAACTTTTGATTCAAGAACCGAGATAAGGAGACAATCGACATGGGAGCTTCAAACTTTTAAAGAACGATGGAGCAAAGCGGTAGAAGAAGACATTAAGTGGATCGATCCATCGTCATCAAGCTCGATGACAAAGAGGAAGAGTAACGGTAATAACAGAAGATTAAGGCGTGGTAGTAGTAGTAGTCACCGAGTAAAGCATAAGAGAAGTCAAGAGACATCAAGAACAACAACAACACACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

438

Amino Acids

50.65

Weight (kDa)

9.78

Isoelectric Point (pI)

56.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 83 - 313 1.8e-113 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 934
AccI GTMKAC 1 cut(s) 396
AccII CGCG 1 cut(s) 425
AccIII TCCGGA 1 cut(s) 559
AciI CCGC 2 cut(s) 423, 1151
AclWI GGATC 5 cut(s) 486, 612, 797, 1172, 1181
AcsI RAATTY 3 cut(s) 427, 619, 743
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 2 cut(s) 127, 929
AfiI CCNNNNNNNGG 3 cut(s) 559, 815, 1098
AflII CTTAAG 1 cut(s) 377
AjnI CCWGG 1 cut(s) 1055
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 5 cut(s) 131, 798, 854, 1120, 1194
AluI AGCT 5 cut(s) 131, 798, 854, 1120, 1194
Alw26I GTCTC 4 cut(s) 936, 1054, 1096, 1280
AlwI GGATC 5 cut(s) 486, 612, 797, 1172, 1181
Aor13HI TCCGGA 1 cut(s) 559
AoxI GGCC 2 cut(s) 772, 1066
ApeKI GCWGC 1 cut(s) 854
ApoI RAATTY 3 cut(s) 427, 619, 743
Asp700I GAANNNNTTC 1 cut(s) 1017
AspLEI GCGC 1 cut(s) 935
AspS9I GGNCC 2 cut(s) 688, 1053
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 2 cut(s) 1022, 1250
AsuII TTCGAA 1 cut(s) 848
AvaII GGWCC 2 cut(s) 688, 1053
BauI CACGAG 2 cut(s) 258, 1041
BbsI GAAGAC 2 cut(s) 1040, 1167
BbvI GCAGC 1 cut(s) 841
BccI CCATC 6 cut(s) 25, 449, 564, 897, 1134, 1189
BceAI ACGGC 1 cut(s) 1053
BciT130I CCWGG 1 cut(s) 1057
BciVI GTATCC 1 cut(s) 580
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 4 cut(s) 936, 1054, 1096, 1280
BfaI CTAG 3 cut(s) 276, 309, 795
BfrI CTTAAG 1 cut(s) 377
BfuI GTATCC 1 cut(s) 580
BglII AGATCT 1 cut(s) 283
BisI GCNGC 1 cut(s) 855
BlsI GCNGC 1 cut(s) 856
Bme1390I CCNGG 2 cut(s) 91, 1057
Bme18I GGWCC 2 cut(s) 688, 1053
BmgT120I GGNCC 2 cut(s) 688, 1053
BmiI GGNNCC 2 cut(s) 837, 1054
BmrFI CCNGG 2 cut(s) 91, 1057
BpiI GAAGAC 2 cut(s) 1040, 1167
BpmI CTGGAG 2 cut(s) 503, 686
Bpu10I CCTNAGC 1 cut(s) 216
Bpu14I TTCGAA 1 cut(s) 848
BpuEI CTTGAG 1 cut(s) 57
BpuMI CCSGG 1 cut(s) 91
Bsa29I ATCGAT 1 cut(s) 1176
BsaI GGTCTC 1 cut(s) 936
BsaWI WCCGGW 3 cut(s) 559, 815, 838
BsaXI ACNNNNNCTCC 2 cut(s) 537, 567
Bsc4I CCNNNNNNNGG 3 cut(s) 559, 815, 1098
Bse118I RCCGGY 1 cut(s) 679
Bse1I ACTGG 1 cut(s) 669
BseAI TCCGGA 1 cut(s) 559
BseBI CCWGG 1 cut(s) 1057
BseCI ATCGAT 1 cut(s) 1176
BseGI GGATG 3 cut(s) 556, 568, 908
BseLI CCNNNNNNNGG 3 cut(s) 559, 815, 1098
BseMII CTCAG 3 cut(s) 311, 813, 1014
BseNI ACTGG 1 cut(s) 669
BseXI GCAGC 1 cut(s) 841
Bsh1236I CGCG 1 cut(s) 425
BshFI GGCC 2 cut(s) 774, 1068
BshVI ATCGAT 1 cut(s) 1176
BsiSI CCGG 5 cut(s) 90, 560, 680, 816, 839
BslFI GGGAC 3 cut(s) 611, 675, 1066
BslI CCNNNNNNNGG 3 cut(s) 559, 815, 1098
BsmAI GTCTC 4 cut(s) 936, 1054, 1096, 1280
BsmFI GGGAC 3 cut(s) 611, 675, 1066
BsmI GAATGC 1 cut(s) 996
BsnI GGCC 2 cut(s) 774, 1068
Bso31I GGTCTC 1 cut(s) 936
Bsp119I TTCGAA 1 cut(s) 848
Bsp13I TCCGGA 1 cut(s) 559
Bsp1407I TGTACA 1 cut(s) 125
Bsp143I GATC 8 cut(s) 138, 278, 283, 478, 604, 802, 1173, 1177
BspACI CCGC 2 cut(s) 423, 1151
BspANI GGCC 2 cut(s) 774, 1068
BspCNI CTCAG 3 cut(s) 312, 812, 1015
BspDI ATCGAT 1 cut(s) 1176
BspEI TCCGGA 1 cut(s) 559
BspFNI CGCG 1 cut(s) 425
BspLI GGNNCC 2 cut(s) 837, 1054
BspPI GGATC 5 cut(s) 486, 612, 797, 1172, 1181
BspT104I TTCGAA 1 cut(s) 848
BspTI CTTAAG 1 cut(s) 377
BspTNI GGTCTC 1 cut(s) 936
BsrFI RCCGGY 1 cut(s) 679
BsrGI TGTACA 1 cut(s) 125
BsrI ACTGG 1 cut(s) 669
BssAI RCCGGY 1 cut(s) 679
BssMI GATC 8 cut(s) 138, 278, 283, 478, 604, 802, 1173, 1177
BssSI CACGAG 2 cut(s) 258, 1041
Bst2BI CACGAG 2 cut(s) 258, 1041
Bst2UI CCWGG 1 cut(s) 1057
Bst4CI ACNGT 3 cut(s) 273, 350, 1220
Bst6I CTCTTC 1 cut(s) 1205
BstAFI CTTAAG 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 125
BstBI TTCGAA 1 cut(s) 848
BstC8I GCNNGC 1 cut(s) 254
BstDEI CTNAG 4 cut(s) 216, 320, 799, 1023
BstF5I GGATG 3 cut(s) 556, 568, 908
BstFNI CGCG 1 cut(s) 425
BstHHI GCGC 1 cut(s) 935
BstKTI GATC 8 cut(s) 141, 281, 286, 481, 607, 805, 1176, 1180
BstMAI GTCTC 4 cut(s) 936, 1054, 1096, 1280
BstMBI GATC 8 cut(s) 138, 278, 283, 478, 604, 802, 1173, 1177
BstNI CCWGG 1 cut(s) 1057
BstSCI CCNGG 2 cut(s) 89, 1055
BstUI CGCG 1 cut(s) 425
BstV1I GCAGC 1 cut(s) 841
BstV2I GAAGAC 2 cut(s) 1040, 1167
BstX2I RGATCY 4 cut(s) 283, 478, 604, 802
BstXI CCANNNNNNTGG 1 cut(s) 455
BstYI RGATCY 4 cut(s) 283, 478, 604, 802
Bsu15I ATCGAT 1 cut(s) 1176
BsuI GTATCC 1 cut(s) 580
BsuRI GGCC 2 cut(s) 774, 1068
BsuTUI ATCGAT 1 cut(s) 1176
BtsCI GGATG 3 cut(s) 556, 568, 908
BtsIMutI CAGTG 1 cut(s) 663
Cac8I GCNNGC 1 cut(s) 254
CfoI GCGC 1 cut(s) 935
Cfr10I RCCGGY 1 cut(s) 679
Cfr13I GGNCC 2 cut(s) 688, 1053
ClaI ATCGAT 1 cut(s) 1176
CseI GACGC 1 cut(s) 407
Csp6I GTAC 2 cut(s) 126, 928
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 5 cut(s) 8, 121, 211, 899, 1113
CviQI GTAC 2 cut(s) 126, 928
DdeI CTNAG 4 cut(s) 216, 320, 799, 1023
DpnI GATC 8 cut(s) 140, 280, 285, 480, 606, 804, 1175, 1179
DpnII GATC 8 cut(s) 138, 278, 283, 478, 604, 802, 1173, 1177
DraI TTTAAA 1 cut(s) 1132
Eam1104I CTCTTC 1 cut(s) 1205
EarI CTCTTC 1 cut(s) 1205
Eco31I GGTCTC 1 cut(s) 936
Eco32I GATATC 1 cut(s) 672
Eco47I GGWCC 2 cut(s) 688, 1053
Eco57I CTGAAG 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 1055
EcoRV GATATC 1 cut(s) 672
FaeI CATG 5 cut(s) 11, 124, 214, 902, 1116
FaqI GGGAC 3 cut(s) 611, 675, 1066
FatI CATG 5 cut(s) 7, 120, 210, 898, 1112
FauI CCCGC 1 cut(s) 430
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 1 cut(s) 855
FokI GGATG 3 cut(s) 543, 575, 915
Fsp4HI GCNGC 1 cut(s) 855
FspBI CTAG 3 cut(s) 276, 309, 795
FspI TGCGCA 1 cut(s) 934
GlaI GCGC 1 cut(s) 934
GluI GCNGC 1 cut(s) 855
GsuI CTGGAG 2 cut(s) 503, 686
HaeIII GGCC 2 cut(s) 774, 1068
HapII CCGG 5 cut(s) 90, 560, 680, 816, 839
HgaI GACGC 1 cut(s) 407
HhaI GCGC 1 cut(s) 935
Hin1II CATG 5 cut(s) 11, 124, 214, 902, 1116
Hin6I GCGC 1 cut(s) 933
HinP1I GCGC 1 cut(s) 933
HincII GTYRAC 2 cut(s) 235, 397
HindII GTYRAC 2 cut(s) 235, 397
HinfI GANTC 5 cut(s) 221, 264, 549, 874, 1082
HpaI GTTAAC 1 cut(s) 235
HpaII CCGG 5 cut(s) 90, 560, 680, 816, 839
HphI GGTGA 2 cut(s) 1022, 1250
Hpy166II GTNNAC 4 cut(s) 126, 235, 397, 760
Hpy188I TCNGA 4 cut(s) 226, 283, 321, 802
Hpy8I GTNNAC 4 cut(s) 126, 235, 397, 760
Hpy99I CGWCG 2 cut(s) 398, 401
HpyAV CCTTC 2 cut(s) 821, 995
HpyCH4III ACNGT 3 cut(s) 273, 350, 1220
HpyCH4IV ACGT 2 cut(s) 393, 957
HpyCH4V TGCA 4 cut(s) 515, 542, 813, 867
HpyF3I CTNAG 4 cut(s) 216, 320, 799, 1023
HpySE526I ACGT 2 cut(s) 393, 957
Hsp92II CATG 5 cut(s) 11, 124, 214, 902, 1116
HspAI GCGC 1 cut(s) 933
Kpn2I TCCGGA 1 cut(s) 559
KspAI GTTAAC 1 cut(s) 235
Kzo9I GATC 8 cut(s) 138, 278, 283, 478, 604, 802, 1173, 1177
LmnI GCTCC 3 cut(s) 841, 1117, 1143
Lsp1109I GCAGC 1 cut(s) 841
MaeI CTAG 3 cut(s) 276, 309, 795
MaeII ACGT 2 cut(s) 393, 957
MaeIII GTNAC 5 cut(s) 45, 350, 389, 1214, 1256
MalI GATC 8 cut(s) 140, 280, 285, 480, 606, 804, 1175, 1179
MboI GATC 8 cut(s) 138, 278, 283, 478, 604, 802, 1173, 1177
MflI RGATCY 4 cut(s) 283, 478, 604, 802
MluCI AATT 5 cut(s) 242, 290, 427, 619, 743
MnlI CCTC 9 cut(s) 267, 305, 309, 315, 563, 595, 764, 816, 1200
MroI TCCGGA 1 cut(s) 559
MroXI GAANNNNTTC 1 cut(s) 1017
MseI TTAA 9 cut(s) 54, 234, 245, 293, 378, 651, 1131, 1167, 1235
MslI CAYNNNNRTG 2 cut(s) 453, 561
MspCI CTTAAG 1 cut(s) 377
MspI CCGG 5 cut(s) 90, 560, 680, 816, 839
MspR9I CCNGG 2 cut(s) 91, 1057
Mva1269I GAATGC 1 cut(s) 996
MvaI CCWGG 1 cut(s) 1057
MvnI CGCG 1 cut(s) 425
NciI CCSGG 1 cut(s) 91
NdeII GATC 8 cut(s) 138, 278, 283, 478, 604, 802, 1173, 1177
NlaIII CATG 5 cut(s) 11, 124, 214, 902, 1116
NlaIV GGNNCC 2 cut(s) 837, 1054
NmuCI GTSAC 2 cut(s) 45, 1256
NsbI TGCGCA 1 cut(s) 934
NspV TTCGAA 1 cut(s) 848
PctI GAATGC 1 cut(s) 996
PdmI GAANNNNTTC 1 cut(s) 1017
PfeI GAWTC 5 cut(s) 221, 264, 549, 874, 1082
PkrI GCNGC 1 cut(s) 856
Psp6I CCWGG 1 cut(s) 1055
PspGI CCWGG 1 cut(s) 1055
PspN4I GGNNCC 2 cut(s) 837, 1054
PspPI GGNCC 2 cut(s) 688, 1053
PsuI RGATCY 4 cut(s) 283, 478, 604, 802
RsaI GTAC 2 cut(s) 127, 929
RsaNI GTAC 2 cut(s) 126, 928
RseI CAYNNNNRTG 2 cut(s) 453, 561
SalI GTCGAC 1 cut(s) 395
SaqAI TTAA 9 cut(s) 54, 234, 245, 293, 378, 651, 1131, 1167, 1235
SatI GCNGC 1 cut(s) 855
Sau3AI GATC 8 cut(s) 138, 278, 283, 478, 604, 802, 1173, 1177
Sau96I GGNCC 2 cut(s) 688, 1053
ScrFI CCNGG 2 cut(s) 91, 1057
SfuI TTCGAA 1 cut(s) 848
SgrDI CGTCGACG 1 cut(s) 395
SinI GGWCC 2 cut(s) 688, 1053
SmiMI CAYNNNNRTG 2 cut(s) 453, 561
SmlI CTYRAG 2 cut(s) 72, 377
SmoI CTYRAG 2 cut(s) 72, 377
Sse9I AATT 5 cut(s) 242, 290, 427, 619, 743
SsiI CCGC 2 cut(s) 423, 1151
SspI AATATT 1 cut(s) 163
SspMI CTAG 3 cut(s) 276, 309, 795
StyD4I CCNGG 2 cut(s) 89, 1055
TaaI ACNGT 3 cut(s) 273, 350, 1220
TaiI ACGT 2 cut(s) 396, 960
TaqI TCGA 6 cut(s) 396, 698, 848, 1109, 1176, 1196
TaqII GACCGA 1 cut(s) 960
TasI AATT 5 cut(s) 242, 290, 427, 619, 743
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 5 cut(s) 221, 264, 549, 874, 1082
Tru1I TTAA 9 cut(s) 54, 234, 245, 293, 378, 651, 1131, 1167, 1235
Tru9I TTAA 9 cut(s) 54, 234, 245, 293, 378, 651, 1131, 1167, 1235
TscAI CASTG 1 cut(s) 663
TseFI GTSAC 2 cut(s) 45, 1256
TseI GCWGC 1 cut(s) 854
Tsp45I GTSAC 2 cut(s) 45, 1256
TspDTI ATGAA 6 cut(s) 38, 116, 737, 887, 932, 977
TspGWI ACGGA 1 cut(s) 716
TspRI CASTG 1 cut(s) 663
Vha464I CTTAAG 1 cut(s) 377
VpaK11BI GGWCC 2 cut(s) 688, 1053
XapI RAATTY 3 cut(s) 427, 619, 743
XbaI TCTAGA 2 cut(s) 275, 308
XmiI GTMKAC 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 1017
XspI CTAG 3 cut(s) 276, 309, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.