Rw4G022980

Protein of unknown function (DUF707)

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
48465609 .. 48474874
9266 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G022980.1

Sequence Viewer

Length: 885 bp
ATGAGAGTCTGTTTTACTTCAGCAGAAAAAATATCGAGCTTCAATTCATATGGAAAAGTGAAGCAGATGGCTGTAGGTGTGAGATGTATGCTTATCGTTCTTACCGGGTTTGTTGTGTGGCAACCCGGTACACCATTCCAACGGTGGCATGACACTTCTGATGCTTGCCTTCAGGAAATTCTTTTGAGCTCCAGAAAGTTGGACGGTTTGCCTCGTGGCATAATACAAGCTAGGTCGGATTTAGAGCTGAGGCCTTTATGGCTGATTAGTTCAAAGTTAATGGTTGATTATAGAAATCGCAATTTACTAGCTATTACAGCTGGTATTAAGCAGAAACATAGTGTGGATGATATTATGCAAAAGAGCAGGTCCTACTTTTGCTGTTCTTGGATTTTCTCATTTCTCTTCTTTTCGGGTCTTTGTAGGTGGTTTGCAAAACGATTTCTACATCCAGATGTTGTGTCCATTTTTTATTACATATTCCTTTGGGATGAAGATTTGGGGGTTGAGGATTTTAACCCAGCAAGGTACTATTCTGGTTACCTTGAAATTGTAAGAGAAGCAGGACTGGAGATATCTCAGCCAGTTTTGCATCCAAATTCATCTGATATACATCATAGAATTACAGTTCGTGCTGAAAAAAAGAAGTTCCATAGAAGAGTTTATGATAGTAGAGACAGTGTGAAGTGTACGGAGGAAAGTCGAGGACCACCATGCACTGGGTTTGTGGAAGGTATGGCTCCGGTTTTTTCAAGATCTACCTGGCATTGCACTTGGCATCTTATACAGTTTATCTCTATATATTGGTCTCTATTACATAATTGGCTAAATAGTTTATGTATGAAACAATTATGGATATATTTGTTGGCTGTAATGACAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

294

Amino Acids

34.39

Weight (kDa)

9.07

Isoelectric Point (pI)

53.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 66 - 124 6.2e-09 Protein of unknown function (DUF707)
DUF707 PF05212 143 - 267 3.2e-54 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 357
AccB7I CCANNNNNTGG 1 cut(s) 719
AcsI RAATTY 2 cut(s) 177, 598
AcuI CTGAAG 1 cut(s) 155
AfaI GTAC 3 cut(s) 130, 530, 691
AfiI CCNNNNNNNGG 1 cut(s) 719
AgsI TTSAA 4 cut(s) 43, 273, 548, 753
AjnI CCWGG 1 cut(s) 761
AluBI AGCT 6 cut(s) 39, 189, 230, 247, 311, 320
AluI AGCT 6 cut(s) 39, 189, 230, 247, 311, 320
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 2 cut(s) 669, 813
AoxI GGCC 1 cut(s) 251
ApoI RAATTY 2 cut(s) 177, 598
AspS9I GGNCC 2 cut(s) 369, 707
AsuC2I CCSGG 2 cut(s) 106, 126
AvaII GGWCC 2 cut(s) 369, 707
BanII GRGCYC 1 cut(s) 191
BauI CACGAG 1 cut(s) 213
Bbv12I GWGCWC 1 cut(s) 191
BbvCI CCTCAGC 1 cut(s) 248
BccI CCATC 1 cut(s) 61
BciT130I CCWGG 1 cut(s) 763
BcnI CCSGG 2 cut(s) 106, 126
BcoDI GTCTC 2 cut(s) 669, 813
BfaI CTAG 2 cut(s) 231, 308
BfmI CTRYAG 1 cut(s) 72
BfuAI ACCTGC 1 cut(s) 357
BglI GCCNNNNNGGC 1 cut(s) 259
BglII AGATCT 1 cut(s) 755
Bme1390I CCNGG 3 cut(s) 106, 126, 763
Bme18I GGWCC 2 cut(s) 369, 707
BmgT120I GGNCC 2 cut(s) 369, 707
BmiI GGNNCC 1 cut(s) 741
BmrFI CCNGG 3 cut(s) 106, 126, 763
BmrI ACTGGG 1 cut(s) 729
BmsI GCATC 3 cut(s) 151, 601, 787
BmuI ACTGGG 1 cut(s) 729
BpmI CTGGAG 2 cut(s) 175, 590
Bpu10I CCTNAGC 1 cut(s) 248
BpuMI CCSGG 2 cut(s) 106, 126
BsaBI GATNNNNATC 1 cut(s) 612
BsaI GGTCTC 1 cut(s) 813
BsaWI WCCGGW 1 cut(s) 742
Bsc4I CCNNNNNNNGG 1 cut(s) 719
Bse1I ACTGG 3 cut(s) 573, 584, 724
Bse3DI GCAATG 1 cut(s) 766
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 1 cut(s) 763
BseGI GGATG 4 cut(s) 352, 448, 496, 592
BseJI GATNNNNATC 1 cut(s) 612
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMI GCAATG 1 cut(s) 766
BseMII CTCAG 2 cut(s) 239, 593
BseNI ACTGG 3 cut(s) 573, 584, 724
BseYI CCCAGC 1 cut(s) 520
BshFI GGCC 1 cut(s) 253
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 3 cut(s) 105, 126, 743
BslI CCNNNNNNNGG 1 cut(s) 719
BsmAI GTCTC 2 cut(s) 669, 813
BsnI GGCC 1 cut(s) 253
Bso31I GGTCTC 1 cut(s) 813
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 1 cut(s) 755
BspANI GGCC 1 cut(s) 253
BspCNI CTCAG 2 cut(s) 240, 592
BspLI GGNNCC 1 cut(s) 741
BspMI ACCTGC 1 cut(s) 357
BspTNI GGTCTC 1 cut(s) 813
BsrDI GCAATG 1 cut(s) 766
BsrI ACTGG 3 cut(s) 573, 584, 724
BssMI GATC 1 cut(s) 755
BssSI CACGAG 1 cut(s) 213
Bst2BI CACGAG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 763
Bst4CI ACNGT 5 cut(s) 144, 206, 628, 680, 789
Bst6I CTCTTC 2 cut(s) 410, 652
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 2 cut(s) 248, 579
BstEII GGTNACC 1 cut(s) 539
BstF5I GGATG 4 cut(s) 352, 448, 496, 592
BstKTI GATC 1 cut(s) 758
BstMAI GTCTC 2 cut(s) 669, 813
BstMBI GATC 1 cut(s) 755
BstMWI GCNNNNNNNGC 3 cut(s) 259, 317, 589
BstNI CCWGG 1 cut(s) 763
BstPI GGTNACC 1 cut(s) 539
BstSCI CCNGG 3 cut(s) 104, 124, 761
BstSFI CTRYAG 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 755
BstXI CCANNNNNNTGG 1 cut(s) 199
BstYI RGATCY 1 cut(s) 755
BsuRI GGCC 1 cut(s) 253
BtsCI GGATG 4 cut(s) 352, 448, 496, 592
BtsIMutI CAGTG 2 cut(s) 685, 717
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 1 cut(s) 166
Cfr13I GGNCC 2 cut(s) 369, 707
Csp6I GTAC 3 cut(s) 129, 529, 690
CviAII CATG 2 cut(s) 149, 714
CviQI GTAC 3 cut(s) 129, 529, 690
DdeI CTNAG 2 cut(s) 248, 579
DpnI GATC 1 cut(s) 757
DpnII GATC 1 cut(s) 755
Eam1104I CTCTTC 2 cut(s) 410, 652
EarI CTCTTC 2 cut(s) 410, 652
Ecl136II GAGCTC 1 cut(s) 189
Eco147I AGGCCT 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 191
Eco31I GGTCTC 1 cut(s) 813
Eco32I GATATC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 369, 707
Eco53kI GAGCTC 1 cut(s) 189
Eco57I CTGAAG 1 cut(s) 155
Eco91I GGTNACC 1 cut(s) 539
EcoICRI GAGCTC 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 369
EcoO65I GGTNACC 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 761
EcoRV GATATC 1 cut(s) 576
EcoT38I GRGCYC 1 cut(s) 191
FaeI CATG 2 cut(s) 152, 717
FatI CATG 2 cut(s) 148, 713
FauNDI CATATG 1 cut(s) 49
FokI GGATG 4 cut(s) 359, 435, 503, 579
FriOI GRGCYC 1 cut(s) 191
FspBI CTAG 2 cut(s) 231, 308
GsaI CCCAGC 1 cut(s) 524
GsuI CTGGAG 2 cut(s) 175, 590
HaeIII GGCC 1 cut(s) 253
HapII CCGG 3 cut(s) 105, 126, 743
Hin1II CATG 2 cut(s) 152, 717
HinfI GANTC 1 cut(s) 6
HpaII CCGG 3 cut(s) 105, 126, 743
Hpy166II GTNNAC 2 cut(s) 131, 690
Hpy188I TCNGA 3 cut(s) 160, 238, 607
Hpy188III TCNNGA 4 cut(s) 173, 192, 452, 753
Hpy8I GTNNAC 2 cut(s) 131, 690
HpyAV CCTTC 2 cut(s) 179, 725
HpyCH4III ACNGT 5 cut(s) 144, 206, 628, 680, 789
HpyCH4V TGCA 5 cut(s) 358, 434, 592, 717, 771
HpyF10VI GCNNNNNNNGC 3 cut(s) 259, 317, 589
HpyF3I CTNAG 2 cut(s) 248, 579
Hsp92II CATG 2 cut(s) 152, 717
Kzo9I GATC 1 cut(s) 755
LmnI GCTCC 2 cut(s) 194, 745
LweI GCATC 3 cut(s) 151, 601, 787
MaeI CTAG 2 cut(s) 231, 308
MaeIII GTNAC 1 cut(s) 539
MalI GATC 1 cut(s) 757
MboI GATC 1 cut(s) 755
MboII GAAGA 3 cut(s) 397, 506, 669
MflI RGATCY 1 cut(s) 755
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 9 cut(s) 43, 177, 301, 549, 598, 621, 820, 848, 880
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 3 cut(s) 163, 180, 216
MnlI CCTC 5 cut(s) 222, 243, 502, 688, 698
MseI TTAA 3 cut(s) 278, 327, 516
MslI CAYNNNNRTG 1 cut(s) 453
MspA1I CMGCKG 1 cut(s) 320
MspI CCGG 3 cut(s) 105, 126, 743
MspR9I CCNGG 3 cut(s) 106, 126, 763
MvaI CCWGG 1 cut(s) 763
MwoI GCNNNNNNNGC 3 cut(s) 259, 317, 589
NciI CCSGG 2 cut(s) 106, 126
NdeI CATATG 1 cut(s) 49
NdeII GATC 1 cut(s) 755
NlaIII CATG 2 cut(s) 152, 717
NlaIV GGNNCC 1 cut(s) 741
PceI AGGCCT 1 cut(s) 253
PflMI CCANNNNNTGG 1 cut(s) 719
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PpuMI RGGWCCY 1 cut(s) 369
Psp124BI GAGCTC 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 761
PspEI GGTNACC 1 cut(s) 539
PspFI CCCAGC 1 cut(s) 520
PspGI CCWGG 1 cut(s) 761
PspN4I GGNNCC 1 cut(s) 741
PspPI GGNCC 2 cut(s) 369, 707
PspPPI RGGWCCY 1 cut(s) 369
PsuI RGATCY 1 cut(s) 755
PvuII CAGCTG 1 cut(s) 320
RsaI GTAC 3 cut(s) 130, 530, 691
RsaNI GTAC 3 cut(s) 129, 529, 690
RseI CAYNNNNRTG 1 cut(s) 453
SacI GAGCTC 1 cut(s) 191
SaqAI TTAA 3 cut(s) 278, 327, 516
Sau3AI GATC 1 cut(s) 755
Sau96I GGNCC 2 cut(s) 369, 707
SchI GAGTC 1 cut(s) 15
ScrFI CCNGG 3 cut(s) 106, 126, 763
SduI GDGCHC 1 cut(s) 191
SfaNI GCATC 3 cut(s) 151, 601, 787
SfcI CTRYAG 1 cut(s) 72
SinI GGWCC 2 cut(s) 369, 707
SmiMI CAYNNNNRTG 1 cut(s) 453
Sse9I AATT 9 cut(s) 43, 177, 301, 549, 598, 621, 820, 848, 880
SseBI AGGCCT 1 cut(s) 253
SspMI CTAG 2 cut(s) 231, 308
SstI GAGCTC 1 cut(s) 191
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 3 cut(s) 104, 124, 761
TaaI ACNGT 5 cut(s) 144, 206, 628, 680, 789
TaqI TCGA 2 cut(s) 35, 703
TasI AATT 9 cut(s) 43, 177, 301, 549, 598, 621, 820, 848, 880
Tru1I TTAA 3 cut(s) 278, 327, 516
Tru9I TTAA 3 cut(s) 278, 327, 516
TscAI CASTG 2 cut(s) 685, 724
TspDTI ATGAA 4 cut(s) 36, 507, 591, 857
TspGWI ACGGA 1 cut(s) 707
TspRI CASTG 2 cut(s) 685, 724
Van91I CCANNNNNTGG 1 cut(s) 719
VpaK11BI GGWCC 2 cut(s) 369, 707
XapI RAATTY 2 cut(s) 177, 598
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XspI CTAG 2 cut(s) 231, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.