AT1G61240

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001643
Physical Location & Seq
Forward (+)
22581336 .. 22585225
3890 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G61240.1

Sequence Viewer

Length: 1278 bp
ATGGAACATGGTTTACCGTCTATTAAATCATGGAAGTCACTTGTTAAGAGAAGAAACAATGCTCAAGAAGGGGGTAAATCGTCATGGAAAATGAAACCAGTTGTGGTGCTAATGTGTACAGTACTTTTGATCTTTTGGTATAAGACTACAAATATTCAGTATGAACAAACAGAGATAGAAGAAACAGATTATCCATTTGAGATGGCAAAGGAATCTGAACCGGTCAGTGAAAAGTTGAAAGGCTTACCTTTTGGTATCATGCAACCTAAATCAGATTTGGAGTTAAAGCCACTTTGGTCAAGTAGTAGTTTGAGGTCAAAGAGCGGCGAATTGACCAACCGTAACTTGTTGGCAATGCCGGTAGGACTTAAGCAAAAGGATAATGTTGATGCTGTTGTAAAGAAGTTTCTTCCTGCGAATTTCACTGTCATTCTATTTCATTATGATGGAAACATGGATCAATGGTGGGATCTAGAGTGGAGCTCAAAAGCCATACACATTGTTGCACATAACCAAACAAAATGGTGGTTTGCGAAACGTTTTCTCCATCCTGATATTGTCTCCATTTACGATTATGTTTTTCTTTGGGATGAAGATCTTGGAGTGGAGAATTTCAACCCTCAAAAGTACCTGAGGATAGTTAAAACAGCGGGACTGGAGATATCTCAACCGGCCTTGCACCCAAACTCAACTGAAGTTCACCATAGAATTACAGTCCGGTCTAGAACGAAAATATTTCATAGGCGAGTTTACGATAGTAGAGGCAATATGAAATGTTCAAATGCTAGTGAAGGGCCCCCATGCACAGGATTTGTTGAAGGAATGGCTCCAGTGTTTTCGAGATCTGCATGGTTTTGCACTTGGAATCTAATACAAAATGATCTGGTTCATGGTTGGGGAATGGATATGAAACTTGGATACTGTGCTCAGGGTGACCGTAGCAAGAAAGTAGGCATTGTCGACAGTGAATATATCTTCCATCAAGGCATTCAAACACTAGGTGGAAGCGGTTATCCCGATAAGAAGAACTCAGCTCGCAGCGGAGTAAATAGGAGACGCGGTTCTGCGACTTTTGATTCAAGAACAGAGATACGGAGACAATCAACGTGGGAGCTGCAAGCTTTTAAAGAACGGTGGAACCAAGCGGTTGCAGAAGACAAATACTGGGTGGAGCGGTCTTCACCGAGCCGGAACCGAATAGGCAATAACCGGAGATTAAAAAGAAGTAGTATGATTCCAAGTTTATTGCAGAGGAAAGCTGAAGAGACTACAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

425

Amino Acids

49.12

Weight (kDa)

9.51

Isoelectric Point (pI)

61.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 80 - 384 5.2e-134 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 324, 1174
AccI GTMKAC 1 cut(s) 960
AccII CGCG 1 cut(s) 1059
AciI CCGC 7 cut(s) 324, 650, 1008, 1041, 1059, 1145, 1174
AclI AACGTT 1 cut(s) 538
AclWI GGATC 2 cut(s) 465, 477
AcsI RAATTY 2 cut(s) 418, 610
AcuI CTGAAG 1 cut(s) 714
AdeI CACNNNGTG 1 cut(s) 1001
AfaI GTAC 3 cut(s) 118, 123, 629
AfiI CCNNNNNNNGG 1 cut(s) 806
AflII CTTAAG 1 cut(s) 368
AgeI ACCGGT 1 cut(s) 220
AgsI TTSAA 6 cut(s) 238, 616, 780, 818, 992, 1080
AloI GAACNNNNNNTCC 2 cut(s) 1045, 1077
AluBI AGCT 5 cut(s) 483, 1034, 1114, 1121, 1259
AluI AGCT 5 cut(s) 483, 1034, 1114, 1121, 1259
Alw21I GWGCWC 2 cut(s) 485, 928
Alw26I GTCTC 4 cut(s) 565, 1048, 1090, 1259
AlwI GGATC 2 cut(s) 465, 477
AoxI GGCC 2 cut(s) 672, 794
ApaI GGGCCC 1 cut(s) 798
ApeKI GCWGC 2 cut(s) 1038, 1114
ApoI RAATTY 2 cut(s) 418, 610
AsiGI ACCGGT 1 cut(s) 220
AspS9I GGNCC 2 cut(s) 794, 795
AsuHPI GGTGA 3 cut(s) 692, 944, 1173
AxyI CCTNAGG 1 cut(s) 632
BaeGI GKGCMC 1 cut(s) 798
BanII GRGCYC 2 cut(s) 485, 798
BbsI GAAGAC 2 cut(s) 1161, 1170
Bbv12I GWGCWC 2 cut(s) 485, 928
BbvI GCAGC 2 cut(s) 1050, 1101
BccI CCATC 4 cut(s) 196, 440, 555, 987
BciVI GTATCC 1 cut(s) 911
BcoDI GTCTC 4 cut(s) 565, 1048, 1090, 1259
BfaI CTAG 4 cut(s) 473, 723, 786, 998
BfrI CTTAAG 1 cut(s) 368
BfuI GTATCC 1 cut(s) 911
BglII AGATCT 2 cut(s) 595, 842
BisI GCNGC 3 cut(s) 325, 1039, 1115
BlsI GCNGC 3 cut(s) 326, 1040, 1116
BmcAI AGTACT 1 cut(s) 123
BmgT120I GGNCC 2 cut(s) 794, 795
BmiI GGNNCC 5 cut(s) 796, 797, 828, 1139, 1193
BmrI ACTGGG 1 cut(s) 1174
BmsI GCATC 1 cut(s) 379
BmuI ACTGGG 1 cut(s) 1174
BpiI GAAGAC 2 cut(s) 1161, 1170
BplI GAGNNNNNCTC 2 cut(s) 467, 499
BpmI CTGGAG 2 cut(s) 677, 813
Bpu10I CCTNAGC 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 48
BsaBI GATNNNNATC 1 cut(s) 594
BsaWI WCCGGW 3 cut(s) 220, 717, 1209
BsaXI ACNNNNNCTCC 4 cut(s) 528, 558, 1045, 1075
Bsc4I CCNNNNNNNGG 1 cut(s) 806
Bse118I RCCGGY 3 cut(s) 220, 358, 670
Bse1I ACTGG 4 cut(s) 98, 660, 830, 1169
Bse21I CCTNAGG 1 cut(s) 632
Bse3DI GCAATG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 594
BseGI GGATG 2 cut(s) 547, 595
BseJI GATNNNNATC 1 cut(s) 594
BseLI CCNNNNNNNGG 1 cut(s) 806
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 3 cut(s) 623, 941, 1044
BseNI ACTGG 4 cut(s) 98, 660, 830, 1169
BseSI GKGCMC 1 cut(s) 798
BseXI GCAGC 2 cut(s) 1050, 1101
Bsh1236I CGCG 1 cut(s) 1059
BshFI GGCC 2 cut(s) 674, 796
BshTI ACCGGT 1 cut(s) 220
BsiHKAI GWGCWC 2 cut(s) 485, 928
BsiSI CCGG 6 cut(s) 221, 359, 671, 718, 1189, 1210
BslFI GGGAC 1 cut(s) 666
BslI CCNNNNNNNGG 1 cut(s) 806
BsmAI GTCTC 4 cut(s) 565, 1048, 1090, 1259
BsmBI CGTCTC 1 cut(s) 1048
BsmFI GGGAC 1 cut(s) 666
BsmI GAATGC 1 cut(s) 987
BsnI GGCC 2 cut(s) 674, 796
Bsp120I GGGCCC 1 cut(s) 794
Bsp1286I GDGCHC 3 cut(s) 485, 798, 928
Bsp1407I TGTACA 1 cut(s) 116
Bsp143I GATC 6 cut(s) 129, 457, 469, 595, 842, 880
BspACI CCGC 7 cut(s) 324, 650, 1008, 1041, 1059, 1145, 1174
BspANI GGCC 2 cut(s) 674, 796
BspCNI CTCAG 3 cut(s) 624, 940, 1043
BspFNI CGCG 1 cut(s) 1059
BspLI GGNNCC 5 cut(s) 796, 797, 828, 1139, 1193
BspPI GGATC 2 cut(s) 465, 477
BspTI CTTAAG 1 cut(s) 368
BsrBI CCGCTC 2 cut(s) 324, 1174
BsrDI GCAATG 1 cut(s) 360
BsrFI RCCGGY 3 cut(s) 220, 358, 670
BsrGI TGTACA 1 cut(s) 116
BsrI ACTGG 4 cut(s) 98, 660, 830, 1169
BssAI RCCGGY 3 cut(s) 220, 358, 670
BssMI GATC 6 cut(s) 129, 457, 469, 595, 842, 880
Bst4CI ACNGT 9 cut(s) 18, 121, 341, 427, 715, 923, 938, 965, 1134
Bst6I CTCTTC 1 cut(s) 1257
BstAFI CTTAAG 1 cut(s) 368
BstAUI TGTACA 1 cut(s) 116
BstC8I GCNNGC 2 cut(s) 1036, 1119
BstDEI CTNAG 3 cut(s) 632, 927, 1030
BstEII GGTNACC 1 cut(s) 932
BstF5I GGATG 2 cut(s) 547, 595
BstFNI CGCG 1 cut(s) 1059
BstKTI GATC 6 cut(s) 132, 460, 472, 598, 845, 883
BstMAI GTCTC 4 cut(s) 565, 1048, 1090, 1259
BstMBI GATC 6 cut(s) 129, 457, 469, 595, 842, 880
BstPI GGTNACC 1 cut(s) 932
BstSLI GKGCMC 1 cut(s) 798
BstUI CGCG 1 cut(s) 1059
BstV1I GCAGC 2 cut(s) 1050, 1101
BstV2I GAAGAC 2 cut(s) 1161, 1170
BstX2I RGATCY 3 cut(s) 469, 595, 842
BstYI RGATCY 3 cut(s) 469, 595, 842
Bsu36I CCTNAGG 1 cut(s) 632
BsuI GTATCC 1 cut(s) 911
BsuRI GGCC 2 cut(s) 674, 796
BtsCI GGATG 2 cut(s) 547, 595
BtsIMutI CAGTG 4 cut(s) 232, 423, 837, 970
Cac8I GCNNGC 2 cut(s) 1036, 1119
Cfr10I RCCGGY 3 cut(s) 220, 358, 670
Cfr13I GGNCC 2 cut(s) 794, 795
CseI GACGC 1 cut(s) 1065
Csp6I GTAC 3 cut(s) 117, 122, 628
CspAI ACCGGT 1 cut(s) 220
CspCI CAANNNNNGTGG 2 cut(s) 1088, 1123
CviAII CATG 8 cut(s) 8, 30, 84, 259, 454, 801, 849, 890
CviQI GTAC 3 cut(s) 117, 122, 628
DdeI CTNAG 3 cut(s) 632, 927, 1030
DpnI GATC 6 cut(s) 131, 459, 471, 597, 844, 882
DpnII GATC 6 cut(s) 129, 457, 469, 595, 842, 880
DraI TTTAAA 1 cut(s) 1126
DraIII CACNNNGTG 1 cut(s) 1001
Eam1104I CTCTTC 1 cut(s) 1257
EarI CTCTTC 1 cut(s) 1257
Ecl136II GAGCTC 1 cut(s) 483
Eco24I GRGCYC 2 cut(s) 485, 798
Eco32I GATATC 1 cut(s) 663
Eco53kI GAGCTC 1 cut(s) 483
Eco57I CTGAAG 1 cut(s) 714
Eco81I CCTNAGG 1 cut(s) 632
Eco91I GGTNACC 1 cut(s) 932
EcoICRI GAGCTC 1 cut(s) 483
EcoO109I RGGNCCY 2 cut(s) 794, 795
EcoO65I GGTNACC 1 cut(s) 932
EcoRV GATATC 1 cut(s) 663
EcoT38I GRGCYC 2 cut(s) 485, 798
Esp3I CGTCTC 1 cut(s) 1048
FaeI CATG 8 cut(s) 11, 33, 87, 262, 457, 804, 852, 893
FaqI GGGAC 1 cut(s) 666
FatI CATG 8 cut(s) 7, 29, 83, 258, 453, 800, 848, 889
FauI CCCGC 1 cut(s) 643
FblI GTMKAC 1 cut(s) 960
Fnu4HI GCNGC 3 cut(s) 325, 1039, 1115
FokI GGATG 2 cut(s) 534, 602
FriOI GRGCYC 2 cut(s) 485, 798
Fsp4HI GCNGC 3 cut(s) 325, 1039, 1115
FspBI CTAG 4 cut(s) 473, 723, 786, 998
GluI GCNGC 3 cut(s) 325, 1039, 1115
GsuI CTGGAG 2 cut(s) 677, 813
HaeIII GGCC 2 cut(s) 674, 796
HapII CCGG 6 cut(s) 221, 359, 671, 718, 1189, 1210
HgaI GACGC 1 cut(s) 1065
Hin1II CATG 8 cut(s) 11, 33, 87, 262, 457, 804, 852, 893
HincII GTYRAC 1 cut(s) 961
HindII GTYRAC 1 cut(s) 961
HindIII AAGCTT 1 cut(s) 1119
HinfI GANTC 4 cut(s) 212, 865, 1076, 1234
HpaII CCGG 6 cut(s) 221, 359, 671, 718, 1189, 1210
HphI GGTGA 3 cut(s) 692, 944, 1173
Hpy166II GTNNAC 5 cut(s) 14, 117, 700, 751, 961
Hpy188I TCNGA 2 cut(s) 217, 274
Hpy188III TCNNGA 7 cut(s) 65, 473, 551, 723, 840, 1016, 1080
Hpy8I GTNNAC 5 cut(s) 14, 117, 700, 751, 961
HpyAV CCTTC 3 cut(s) 62, 785, 812
HpyCH4III ACNGT 9 cut(s) 18, 121, 341, 427, 715, 923, 938, 965, 1134
HpyCH4IV ACGT 2 cut(s) 538, 1106
HpyCH4V TGCA 9 cut(s) 262, 506, 679, 804, 848, 858, 1117, 1151, 1249
HpyF3I CTNAG 3 cut(s) 632, 927, 1030
HpySE526I ACGT 2 cut(s) 538, 1106
Hsp92II CATG 8 cut(s) 11, 33, 87, 262, 457, 804, 852, 893
Kzo9I GATC 6 cut(s) 129, 457, 469, 595, 842, 880
LmnI GCTCC 4 cut(s) 480, 832, 1111, 1171
Lsp1109I GCAGC 2 cut(s) 1050, 1101
LweI GCATC 1 cut(s) 379
MaeI CTAG 4 cut(s) 473, 723, 786, 998
MaeII ACGT 2 cut(s) 538, 1106
MaeIII GTNAC 3 cut(s) 36, 341, 932
MalI GATC 6 cut(s) 131, 459, 471, 597, 844, 882
MbiI CCGCTC 2 cut(s) 324, 1174
MboI GATC 6 cut(s) 129, 457, 469, 595, 842, 880
MboII GAAGA 9 cut(s) 63, 191, 401, 605, 967, 1036, 1166, 1170, 1274
MflI RGATCY 3 cut(s) 469, 595, 842
MhlI GDGCHC 3 cut(s) 485, 798, 928
MluCI AATT 4 cut(s) 329, 418, 610, 708
MnlI CCTC 5 cut(s) 306, 627, 630, 755, 1245
MseI TTAA 7 cut(s) 24, 45, 284, 369, 642, 1125, 1217
MslI CAYNNNNRTG 1 cut(s) 444
MspA1I CMGCKG 2 cut(s) 650, 1041
MspCI CTTAAG 1 cut(s) 368
MspI CCGG 6 cut(s) 221, 359, 671, 718, 1189, 1210
Mva1269I GAATGC 1 cut(s) 987
MvnI CGCG 1 cut(s) 1059
NdeII GATC 6 cut(s) 129, 457, 469, 595, 842, 880
NlaIII CATG 8 cut(s) 11, 33, 87, 262, 457, 804, 852, 893
NlaIV GGNNCC 5 cut(s) 796, 797, 828, 1139, 1193
NmuCI GTSAC 2 cut(s) 36, 932
PctI GAATGC 1 cut(s) 987
PfeI GAWTC 4 cut(s) 212, 865, 1076, 1234
PinAI ACCGGT 1 cut(s) 220
PkrI GCNGC 3 cut(s) 326, 1040, 1116
Psp124BI GAGCTC 1 cut(s) 485
Psp1406I AACGTT 1 cut(s) 538
PspEI GGTNACC 1 cut(s) 932
PspN4I GGNNCC 5 cut(s) 796, 797, 828, 1139, 1193
PspOMI GGGCCC 1 cut(s) 794
PspPI GGNCC 2 cut(s) 794, 795
PsrI GAACNNNNNNTAC 1 cut(s) 29
PsuI RGATCY 3 cut(s) 469, 595, 842
RsaI GTAC 3 cut(s) 118, 123, 629
RsaNI GTAC 3 cut(s) 117, 122, 628
RseI CAYNNNNRTG 1 cut(s) 444
SacI GAGCTC 1 cut(s) 485
SalI GTCGAC 1 cut(s) 959
SaqAI TTAA 7 cut(s) 24, 45, 284, 369, 642, 1125, 1217
SatI GCNGC 3 cut(s) 325, 1039, 1115
Sau3AI GATC 6 cut(s) 129, 457, 469, 595, 842, 880
Sau96I GGNCC 2 cut(s) 794, 795
ScaI AGTACT 1 cut(s) 123
SduI GDGCHC 3 cut(s) 485, 798, 928
SfaNI GCATC 1 cut(s) 379
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 63, 368
SmoI CTYRAG 2 cut(s) 63, 368
Sse9I AATT 4 cut(s) 329, 418, 610, 708
SsiI CCGC 7 cut(s) 324, 650, 1008, 1041, 1059, 1145, 1174
SspI AATATT 2 cut(s) 154, 735
SspMI CTAG 4 cut(s) 473, 723, 786, 998
SstI GAGCTC 1 cut(s) 485
TaaI ACNGT 9 cut(s) 18, 121, 341, 427, 715, 923, 938, 965, 1134
TaiI ACGT 2 cut(s) 541, 1109
TaqI TCGA 2 cut(s) 839, 960
TasI AATT 4 cut(s) 329, 418, 610, 708
TatI WGTACW 2 cut(s) 116, 121
TauI GCSGC 1 cut(s) 327
TfiI GAWTC 4 cut(s) 212, 865, 1076, 1234
Tru1I TTAA 7 cut(s) 24, 45, 284, 369, 642, 1125, 1217
Tru9I TTAA 7 cut(s) 24, 45, 284, 369, 642, 1125, 1217
TscAI CASTG 4 cut(s) 232, 430, 837, 970
TseFI GTSAC 2 cut(s) 36, 932
TseI GCWGC 2 cut(s) 1038, 1114
Tsp45I GTSAC 2 cut(s) 36, 932
TspDTI ATGAA 8 cut(s) 107, 177, 428, 606, 728, 785, 878, 923
TspGWI ACGGA 1 cut(s) 1108
TspRI CASTG 4 cut(s) 232, 430, 837, 970
Vha464I CTTAAG 1 cut(s) 368
XapI RAATTY 2 cut(s) 418, 610
XbaI TCTAGA 2 cut(s) 472, 722
XmiI GTMKAC 1 cut(s) 960
XspI CTAG 4 cut(s) 473, 723, 786, 998
ZrmI AGTACT 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.