Rh5DG050900

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0001643
Physical Location & Seq
Reverse (-)
4292929 .. 4309499
16571 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG050900.1

Sequence Viewer

Length: 921 bp
ATGAAGCTCAGCAAACATACATCCAGCAGAACACATCACCAGCTCGACCATGCATACTTGGTAGCCCCAAGAAGCAACTCTGGAGGACACTTCGCCATAAGTGCATGCCCTGGCCAAGAAGTTGCAATTTCTCAAAAGATTCGAAAACTCTGCATCCGCCGGGGGGACTTCATCGAAATTGAGTTGCCCAGGGGCGGCTACTACTGCCATGGTGGTTTGCAAAACGATTTCTACATCCAGATGTTGTGTCCATTTATGATTACATATTCCTTTGGGATGAAGATTTGGGGGTTGAGGATTTTAACCCAGCAAGGTACTATTCTGGTGTACCTTGAAATTGTAAGAGAAGCAGGACTGGAGATATCTCAGCCAGCTTTGCATCCAAATTCATCTGATATACATCATAGAATTACAGTTCGTGCTAAAAAAAAGAAGTTCCATAGAAGAGTTTATGATAGTAGAGGCAGTGTGAAGTGTACGGAGGAAAGTCGAGGACCACCATGCACTGGGTTTGTGGAAGGTATGGCTCCGGTCTTTTCAAGATCTGCCTGGCATTGCACTTGGCATCTTATACAGAATGATCTTGTACATGGATGGGGTCTGGACATGAAGCTTGGGTATTGTGCACAGGGGGACCGTACAAAGAATGTTGGAGTTGTTGATAGTGAATTTATTTTTCATAAGGGTATACAAAGTTTGGGAGGGGGTGACTCACCCGAAAAAAAGGTTTCCAATTCTAAGAAGAAACGTATTGTTTCAAATCACGATGGAAGAACCGAGATTCGGAGGCAATCAACGCGGGAGTTTACAATGTTCAAAGAACGGTGGAATCGTGCTGTAGAAGAGGACAAGAAGTGGATTGATCCATTCAGAACTGACCAAAGACGGAGAAAGAAACAGCGATTACGCAACAACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

306

Amino Acids

35.32

Weight (kDa)

9.9

Isoelectric Point (pI)

63.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 103 - 281 1.2e-68 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 506
AccI GTMKAC 1 cut(s) 688
AccII CGCG 1 cut(s) 799
AciI CCGC 3 cut(s) 157, 195, 799
AclWI GGATC 1 cut(s) 857
AcoI YGGCCR 1 cut(s) 112
AcsI RAATTY 2 cut(s) 385, 668
AfaI GTAC 5 cut(s) 316, 329, 478, 588, 640
AfiI CCNNNNNNNGG 4 cut(s) 163, 194, 506, 783
AgsI TTSAA 4 cut(s) 335, 540, 759, 817
AjnI CCWGG 3 cut(s) 109, 188, 548
AluBI AGCT 4 cut(s) 7, 43, 374, 613
AluI AGCT 4 cut(s) 7, 43, 374, 613
Alw21I GWGCWC 1 cut(s) 628
Alw44I GTGCAC 1 cut(s) 624
AlwI GGATC 1 cut(s) 857
AoxI GGCC 1 cut(s) 112
ApaLI GTGCAC 1 cut(s) 624
ApoI RAATTY 2 cut(s) 385, 668
AspS9I GGNCC 2 cut(s) 494, 634
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 3 cut(s) 29, 705, 719
AsuII TTCGAA 1 cut(s) 142
AvaII GGWCC 2 cut(s) 494, 634
BaeGI GKGCMC 1 cut(s) 628
BalI TGGCCA 1 cut(s) 114
Bbv12I GWGCWC 1 cut(s) 628
BccI CCATC 2 cut(s) 588, 761
BcgI CGANNNNNNTGC 2 cut(s) 132, 166
BciT130I CCWGG 3 cut(s) 111, 190, 550
BcnI CCSGG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 837
BglII AGATCT 1 cut(s) 542
BisI GCNGC 1 cut(s) 196
BlpI GCTNAGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 197
Bme1390I CCNGG 4 cut(s) 111, 161, 190, 550
Bme18I GGWCC 2 cut(s) 494, 634
BmgT120I GGNCC 2 cut(s) 494, 634
BmiI GGNNCC 2 cut(s) 528, 635
BmrFI CCNGG 4 cut(s) 111, 161, 190, 550
BmrI ACTGGG 1 cut(s) 516
BmsI GCATC 3 cut(s) 162, 388, 574
BmuI ACTGGG 1 cut(s) 516
BpmI CTGGAG 2 cut(s) 102, 377
Bpu1102I GCTNAGC 1 cut(s) 8
Bpu14I TTCGAA 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 161
BsaBI GATNNNNATC 1 cut(s) 399
BsaJI CCNNGG 5 cut(s) 109, 160, 188, 189, 208
BsaWI WCCGGW 1 cut(s) 529
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 194, 506, 783
Bse1I ACTGG 2 cut(s) 360, 511
Bse3DI GCAATG 1 cut(s) 553
Bse8I GATNNNNATC 1 cut(s) 399
BseBI CCWGG 3 cut(s) 111, 190, 550
BseDI CCNNGG 5 cut(s) 109, 160, 188, 189, 208
BseGI GGATG 6 cut(s) 20, 153, 234, 282, 379, 599
BseJI GATNNNNATC 1 cut(s) 399
BseLI CCNNNNNNNGG 4 cut(s) 163, 194, 506, 783
BseMI GCAATG 1 cut(s) 553
BseMII CTCAG 2 cut(s) 22, 380
BseNI ACTGG 2 cut(s) 360, 511
BseSI GKGCMC 1 cut(s) 628
BseYI CCCAGC 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 799
BshFI GGCC 1 cut(s) 114
BsiHKAI GWGCWC 1 cut(s) 628
BsiSI CCGG 2 cut(s) 160, 530
BslFI GGGAC 2 cut(s) 179, 647
BslI CCNNNNNNNGG 4 cut(s) 163, 194, 506, 783
BsmFI GGGAC 2 cut(s) 179, 647
BsnI GGCC 1 cut(s) 114
Bsp119I TTCGAA 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 628
Bsp1407I TGTACA 1 cut(s) 586
Bsp143I GATC 3 cut(s) 542, 580, 862
Bsp1720I GCTNAGC 1 cut(s) 8
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 3 cut(s) 157, 195, 799
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 2 cut(s) 21, 379
BspFNI CGCG 1 cut(s) 799
BspLI GGNNCC 2 cut(s) 528, 635
BspPI GGATC 1 cut(s) 857
BspT104I TTCGAA 1 cut(s) 142
BsrDI GCAATG 1 cut(s) 553
BsrGI TGTACA 1 cut(s) 586
BsrI ACTGG 2 cut(s) 360, 511
BssECI CCNNGG 5 cut(s) 109, 160, 188, 189, 208
BssMI GATC 3 cut(s) 542, 580, 862
BssNAI GTATAC 1 cut(s) 689
BssT1I CCWWGG 1 cut(s) 208
Bst1107I GTATAC 1 cut(s) 689
Bst2UI CCWGG 3 cut(s) 111, 190, 550
Bst4CI ACNGT 3 cut(s) 415, 638, 825
Bst6I CTCTTC 2 cut(s) 439, 837
BstAUI TGTACA 1 cut(s) 586
BstBI TTCGAA 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 106, 372
BstDEI CTNAG 3 cut(s) 8, 366, 738
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 6 cut(s) 20, 153, 234, 282, 379, 599
BstFNI CGCG 1 cut(s) 799
BstKTI GATC 3 cut(s) 545, 583, 865
BstMBI GATC 3 cut(s) 542, 580, 862
BstMWI GCNNNNNNNGC 4 cut(s) 101, 204, 376, 796
BstNI CCWGG 3 cut(s) 111, 190, 550
BstNSI RCATGY 1 cut(s) 108
BstSCI CCNGG 4 cut(s) 109, 159, 188, 548
BstSFI CTRYAG 1 cut(s) 837
BstSLI GKGCMC 1 cut(s) 628
BstUI CGCG 1 cut(s) 799
BstX2I RGATCY 1 cut(s) 542
BstYI RGATCY 1 cut(s) 542
BstZ17I GTATAC 1 cut(s) 689
BsuRI GGCC 1 cut(s) 114
BtgI CCRYGG 1 cut(s) 208
BtsCI GGATG 6 cut(s) 20, 153, 234, 282, 379, 599
BtsI GCAGTG 1 cut(s) 472
BtsIMutI CAGTG 2 cut(s) 472, 504
Cac8I GCNNGC 2 cut(s) 106, 372
Cfr13I GGNCC 2 cut(s) 494, 634
Csp6I GTAC 5 cut(s) 315, 328, 477, 587, 639
CviAII CATG 6 cut(s) 50, 105, 209, 501, 590, 607
CviJI RGCY 9 cut(s) 7, 43, 65, 114, 198, 370, 374, 527, 613
CviKI_1 RGCY 9 cut(s) 7, 43, 65, 114, 198, 370, 374, 527, 613
CviQI GTAC 5 cut(s) 315, 328, 477, 587, 639
DdeI CTNAG 3 cut(s) 8, 366, 738
DpnI GATC 3 cut(s) 544, 582, 864
DpnII GATC 3 cut(s) 542, 580, 862
EaeI YGGCCR 1 cut(s) 112
Eam1104I CTCTTC 2 cut(s) 439, 837
EarI CTCTTC 2 cut(s) 439, 837
EciI GGCGGA 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 208
Eco32I GATATC 1 cut(s) 363
Eco47I GGWCC 2 cut(s) 494, 634
EcoRII CCWGG 3 cut(s) 109, 188, 548
EcoRV GATATC 1 cut(s) 363
EcoT14I CCWWGG 1 cut(s) 208
EcoT22I ATGCAT 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 208
FaeI CATG 6 cut(s) 53, 108, 212, 504, 593, 610
FaqI GGGAC 2 cut(s) 179, 647
FatI CATG 6 cut(s) 49, 104, 208, 500, 589, 606
FauI CCCGC 1 cut(s) 792
FblI GTMKAC 1 cut(s) 688
Fnu4HI GCNGC 1 cut(s) 196
FokI GGATG 6 cut(s) 7, 140, 221, 289, 366, 606
Fsp4HI GCNGC 1 cut(s) 196
GluI GCNGC 1 cut(s) 196
GsaI CCCAGC 1 cut(s) 310
GsuI CTGGAG 2 cut(s) 102, 377
HaeIII GGCC 1 cut(s) 114
HapII CCGG 2 cut(s) 160, 530
Hin1II CATG 6 cut(s) 53, 108, 212, 504, 593, 610
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 4 cut(s) 139, 710, 781, 829
HpaII CCGG 2 cut(s) 160, 530
HphI GGTGA 3 cut(s) 29, 705, 719
Hpy166II GTNNAC 5 cut(s) 328, 477, 626, 689, 807
Hpy188I TCNGA 3 cut(s) 394, 786, 872
Hpy188III TCNNGA 5 cut(s) 81, 238, 540, 602, 764
Hpy8I GTNNAC 5 cut(s) 328, 477, 626, 689, 807
HpyAV CCTTC 1 cut(s) 512
HpyCH4III ACNGT 3 cut(s) 415, 638, 825
HpyCH4IV ACGT 1 cut(s) 748
HpyCH4V TGCA 9 cut(s) 53, 104, 125, 153, 220, 379, 504, 558, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 204, 376, 796
HpyF3I CTNAG 3 cut(s) 8, 366, 738
HpySE526I ACGT 1 cut(s) 748
Hsp92II CATG 6 cut(s) 53, 108, 212, 504, 593, 610
Kzo9I GATC 3 cut(s) 542, 580, 862
LmnI GCTCC 1 cut(s) 532
LweI GCATC 3 cut(s) 162, 388, 574
MaeII ACGT 1 cut(s) 748
MaeIII GTNAC 1 cut(s) 707
MalI GATC 3 cut(s) 544, 582, 864
MboI GATC 3 cut(s) 542, 580, 862
MboII GAAGA 5 cut(s) 292, 456, 754, 783, 854
MflI RGATCY 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 628
MlsI TGGCCA 1 cut(s) 114
MluCI AATT 7 cut(s) 126, 177, 336, 385, 408, 668, 733
MluNI TGGCCA 1 cut(s) 114
MlyI GAGTC 1 cut(s) 704
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 8 cut(s) 77, 288, 455, 475, 485, 695, 780, 838
Mox20I TGGCCA 1 cut(s) 114
Mph1103I ATGCAT 1 cut(s) 55
MscI TGGCCA 1 cut(s) 114
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 1 cut(s) 239
Msp20I TGGCCA 1 cut(s) 114
MspI CCGG 2 cut(s) 160, 530
MspR9I CCNGG 4 cut(s) 111, 161, 190, 550
MvaI CCWGG 3 cut(s) 111, 190, 550
MvnI CGCG 1 cut(s) 799
MwoI GCNNNNNNNGC 4 cut(s) 101, 204, 376, 796
NciI CCSGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 208
NdeII GATC 3 cut(s) 542, 580, 862
NlaIII CATG 6 cut(s) 53, 108, 212, 504, 593, 610
NlaIV GGNNCC 2 cut(s) 528, 635
NmuCI GTSAC 1 cut(s) 707
NsiI ATGCAT 1 cut(s) 55
NspI RCATGY 1 cut(s) 108
NspV TTCGAA 1 cut(s) 142
PaeI GCATGC 1 cut(s) 108
PasI CCCWGGG 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 829
PfeI GAWTC 3 cut(s) 139, 781, 829
PflMI CCANNNNNTGG 1 cut(s) 506
PkrI GCNGC 1 cut(s) 197
PleI GAGTC 1 cut(s) 704
PpsI GAGTC 1 cut(s) 704
Psp6I CCWGG 3 cut(s) 109, 188, 548
PspFI CCCAGC 1 cut(s) 306
PspGI CCWGG 3 cut(s) 109, 188, 548
PspN4I GGNNCC 2 cut(s) 528, 635
PspPI GGNCC 2 cut(s) 494, 634
PsuI RGATCY 1 cut(s) 542
RsaI GTAC 5 cut(s) 316, 329, 478, 588, 640
RsaNI GTAC 5 cut(s) 315, 328, 477, 587, 639
RseI CAYNNNNRTG 1 cut(s) 239
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 1 cut(s) 196
Sau3AI GATC 3 cut(s) 542, 580, 862
Sau96I GGNCC 2 cut(s) 494, 634
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 4 cut(s) 111, 161, 190, 550
SduI GDGCHC 1 cut(s) 628
SetI ASST 9 cut(s) 9, 45, 316, 333, 376, 523, 615, 729, 751
SfaNI GCATC 3 cut(s) 162, 388, 574
SfcI CTRYAG 1 cut(s) 837
SfuI TTCGAA 1 cut(s) 142
SinI GGWCC 2 cut(s) 494, 634
SmiMI CAYNNNNRTG 1 cut(s) 239
SphI GCATGC 1 cut(s) 108
Sse9I AATT 7 cut(s) 126, 177, 336, 385, 408, 668, 733
SsiI CCGC 3 cut(s) 157, 195, 799
StyD4I CCNGG 4 cut(s) 109, 159, 188, 548
StyI CCWWGG 1 cut(s) 208
TaaI ACNGT 3 cut(s) 415, 638, 825
TaiI ACGT 1 cut(s) 751
TaqI TCGA 4 cut(s) 45, 142, 174, 490
TasI AATT 7 cut(s) 126, 177, 336, 385, 408, 668, 733
TatI WGTACW 1 cut(s) 586
TauI GCSGC 1 cut(s) 198
TfiI GAWTC 3 cut(s) 139, 781, 829
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 2 cut(s) 472, 511
TseFI GTSAC 1 cut(s) 707
Tsp45I GTSAC 1 cut(s) 707
TspDTI ATGAA 6 cut(s) 17, 160, 293, 378, 623, 668
TspGWI ACGGA 2 cut(s) 494, 901
TspRI CASTG 2 cut(s) 472, 511
Van91I CCANNNNNTGG 1 cut(s) 506
VneI GTGCAC 1 cut(s) 624
VpaK11BI GGWCC 2 cut(s) 494, 634
XapI RAATTY 2 cut(s) 385, 668
XceI RCATGY 1 cut(s) 108
XmiI GTMKAC 1 cut(s) 688
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.