Rorug04G0425000

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0001643
Physical Location & Seq
Reverse (-)
58448627 .. 58450161
1535 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0425000.1

Sequence Viewer

Length: 1041 bp
ATGGTGGAAGATGGGGTTCGGCCTAGTTCAGCGGTTTACACTTCAATGATAGATGGGCATTTCAAGAAAGGAAATGTAGATTTTGCCACGAGTGGTTTTTCTCCAGATAAGATGTTGTTGACGACCATTATGGATGCGTGTTTCAAAGCCGGCAATTTGAAAGCAGGTTTGGGTGTCTACAGATTGTTAGCAAAGGGTTTTGAACCAGATGCTGTGGTGCTTTCAGCTTTGATGGATGGCTTATGCAAGCATGGAGATTTGGAGGAGGCAAGAAACTACTTCTGCAAGGAAAAGGCTAATGAAATTTCATATACTGTGCTTATTGATGGGATGTGTAAGGAAGAAAACTTTAGTGAAGTTGAGACGATCTTCAGTGAGATGTCCGAAATGGGGTTTATTCCAGACAAATATGTATACACTTCTTGGATTGCTGGGCTATGCAGACAGGGTAATCTGGTCGAGGCTTTTAGACTCAAGAATAAAATGGTTAAAGAGGGCATCAGCCCTGATCTGTTTACTTATAGCTCACTTGTTTTTGGTTTAGCAAGTAAGGGACTCATGGTTGAAGCACAACAGGTTTTCGATGATATGTTGAAAAGAGGAATTACTCCTGACCGTCATGTCTTTGGTATTCTGATAAGAGGGTATTGTGATGAGGGTAATGATGTTGCCATTTTAGGTTTGCATGATGAAATGAGAAAGAGAGGGCTTGTAGTCACAGGAGGCATACCCTGCACTGCTATCCATAAGAAAGTCGTCTTCAAGAGGGAAAGCTGGCTCAGAGTTCTTGCAATTATGGAATTATTGGAATGTTCCATCTGCGGTCCTCGCATTGGTGTGGAGCAAGGACCTCCAGTTATATGTGCCTCGTTCTGTGACAGGGCCTTCAAGGCTTGTGCCGAGGCTTACTACTTGAGGGATGCAATAACACAGGCATCTGAGTGGATCCGTAATGACACAGAGTTATGCCATGCTGAGGTGTTTGCTGTTAAAGATTATACATCTGAGGGCATGGAAGAAACACTTTGCTATGGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

346

Amino Acids

38.43

Weight (kDa)

5.18

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 65 - 91 1.9e-06 PPR repeat
PPR_2 PF13041 100 - 148 2e-11 PPR repeat family
PPR PF01535 102 - 132 2.2e-06 PPR repeat
PPR_3 PF13812 123 - 177 2.6e-07 Pentatricopeptide repeat domain
PPR_1 PF12854 130 - 163 1.1e-07 PPR repeat
PPR_2 PF13041 138 - 182 1.4e-12 PPR repeat family
PPR PF01535 138 - 167 4.8e-06 PPR repeat
PPR_1 PF12854 166 - 197 1.2e-08 PPR repeat
PPR PF01535 172 - 202 5.8e-06 PPR repeat
PPR_2 PF13041 180 - 218 7.8e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 620
Acc36I ACCTGC 1 cut(s) 155
AccI GTMKAC 2 cut(s) 177, 414
AciI CCGC 2 cut(s) 32, 822
AclWI GGATC 2 cut(s) 940, 953
AcsI RAATTY 1 cut(s) 303
AcuI CTGAAG 1 cut(s) 355
AfiI CCNNNNNNNGG 3 cut(s) 390, 833, 976
AgsI TTSAA 9 cut(s) 45, 64, 145, 160, 203, 566, 595, 763, 889
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 3 cut(s) 227, 525, 774
AluI AGCT 3 cut(s) 227, 525, 774
Alw26I GTCTC 1 cut(s) 356
AlwI GGATC 2 cut(s) 940, 953
AlwNI CAGNNNCTG 1 cut(s) 212
AoxI GGCC 2 cut(s) 20, 882
ApoI RAATTY 1 cut(s) 303
AspS9I GGNCC 3 cut(s) 824, 848, 882
AvaII GGWCC 2 cut(s) 824, 848
BamHI GGATCC 1 cut(s) 945
BauI CACGAG 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 751
BbvCI CCTCAGC 1 cut(s) 975
BccI CCATC 6 cut(s) 5, 47, 226, 230, 320, 824
BcoDI GTCTC 1 cut(s) 356
BfaI CTAG 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 178
BfuAI ACCTGC 1 cut(s) 155
BglI GCCNNNNNGGC 1 cut(s) 890
Bme18I GGWCC 2 cut(s) 824, 848
BmgT120I GGNCC 3 cut(s) 824, 848, 882
BmiI GGNNCC 1 cut(s) 947
BmsI GCATC 5 cut(s) 124, 199, 507, 910, 944
BpiI GAAGAC 1 cut(s) 751
BpmI CTGGAG 2 cut(s) 87, 837
Bpu10I CCTNAGC 1 cut(s) 975
BpuEI CTTGAG 2 cut(s) 458, 934
BsaJI CCNNGG 1 cut(s) 900
Bsc4I CCNNNNNNNGG 3 cut(s) 390, 833, 976
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 1 cut(s) 854
BseDI CCNNGG 1 cut(s) 900
BseGI GGATG 4 cut(s) 139, 241, 336, 925
BseLI CCNNNNNNNGG 3 cut(s) 390, 833, 976
BseMII CTCAG 4 cut(s) 793, 930, 966, 996
BseNI ACTGG 1 cut(s) 854
BseRI GAGGAG 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 718
BshFI GGCC 2 cut(s) 22, 884
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 567
BslI CCNNNNNNNGG 3 cut(s) 390, 833, 976
BsmAI GTCTC 1 cut(s) 356
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 567
BsnI GGCC 2 cut(s) 22, 884
Bsp143I GATC 3 cut(s) 366, 508, 945
BspACI CCGC 2 cut(s) 32, 822
BspANI GGCC 2 cut(s) 22, 884
BspCNI CTCAG 4 cut(s) 792, 931, 967, 997
BspLI GGNNCC 1 cut(s) 947
BspMI ACCTGC 1 cut(s) 155
BspPI GGATC 2 cut(s) 940, 953
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 1 cut(s) 854
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 900
BssMI GATC 3 cut(s) 366, 508, 945
BssNAI GTATAC 1 cut(s) 415
BssSI CACGAG 1 cut(s) 88
Bst1107I GTATAC 1 cut(s) 415
Bst2BI CACGAG 1 cut(s) 88
Bst4CI ACNGT 2 cut(s) 316, 617
BstAPI GCANNNNNTGC 1 cut(s) 732
BstC8I GCNNGC 3 cut(s) 151, 248, 776
BstDEI CTNAG 4 cut(s) 779, 939, 975, 1005
BstF5I GGATG 4 cut(s) 139, 241, 336, 925
BstKTI GATC 3 cut(s) 369, 511, 948
BstMAI GTCTC 1 cut(s) 356
BstMBI GATC 3 cut(s) 366, 508, 945
BstMWI GCNNNNNNNGC 3 cut(s) 732, 828, 890
BstSFI CTRYAG 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 751
BstX2I RGATCY 1 cut(s) 945
BstYI RGATCY 1 cut(s) 945
BstZ17I GTATAC 1 cut(s) 415
BsuRI GGCC 2 cut(s) 22, 884
BtsCI GGATG 4 cut(s) 139, 241, 336, 925
BtsI GCAGTG 1 cut(s) 735
BtsIMutI CAGTG 2 cut(s) 379, 735
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 3 cut(s) 151, 248, 776
CaiI CAGNNNCTG 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 3 cut(s) 824, 848, 882
CviAII CATG 6 cut(s) 251, 559, 620, 686, 971, 1012
DdeI CTNAG 4 cut(s) 779, 939, 975, 1005
DpnI GATC 3 cut(s) 368, 510, 947
DpnII GATC 3 cut(s) 366, 508, 945
DrdI GACNNNNNNGTC 1 cut(s) 620
DseDI GACNNNNNNGTC 1 cut(s) 620
Eco47I GGWCC 2 cut(s) 824, 848
Eco57I CTGAAG 1 cut(s) 355
EcoO109I RGGNCCY 2 cut(s) 848, 882
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 6 cut(s) 254, 562, 623, 689, 974, 1015
FalI AAGNNNNNCTT 2 cut(s) 1008, 1040
FaqI GGGAC 1 cut(s) 567
FatI CATG 6 cut(s) 250, 558, 619, 685, 970, 1011
FblI GTMKAC 2 cut(s) 177, 414
FokI GGATG 4 cut(s) 146, 248, 343, 932
FspBI CTAG 1 cut(s) 24
GsaI CCCAGC 1 cut(s) 435
GsuI CTGGAG 2 cut(s) 87, 837
HaeIII GGCC 2 cut(s) 22, 884
HapII CCGG 1 cut(s) 150
Hin1II CATG 6 cut(s) 254, 562, 623, 689, 974, 1015
HincII GTYRAC 1 cut(s) 120
HindII GTYRAC 1 cut(s) 120
HinfI GANTC 2 cut(s) 471, 555
HpaII CCGG 1 cut(s) 150
Hpy166II GTNNAC 5 cut(s) 37, 120, 178, 415, 516
Hpy188I TCNGA 5 cut(s) 385, 636, 782, 940, 1006
Hpy188III TCNNGA 6 cut(s) 64, 104, 401, 475, 611, 763
Hpy8I GTNNAC 5 cut(s) 37, 120, 178, 415, 516
HpyAV CCTTC 1 cut(s) 895
HpyCH4III ACNGT 2 cut(s) 316, 617
HpyCH4V TGCA 7 cut(s) 246, 285, 441, 685, 735, 791, 923
HpyF10VI GCNNNNNNNGC 3 cut(s) 732, 828, 890
HpyF3I CTNAG 4 cut(s) 779, 939, 975, 1005
Hsp92II CATG 6 cut(s) 254, 562, 623, 689, 974, 1015
KroI GCCGGC 1 cut(s) 149
KroNI GCCGGC 1 cut(s) 151
Kzo9I GATC 3 cut(s) 366, 508, 945
LmnI GCTCC 1 cut(s) 841
LweI GCATC 5 cut(s) 124, 199, 507, 910, 944
MaeI CTAG 1 cut(s) 24
MaeIII GTNAC 2 cut(s) 715, 875
MalI GATC 3 cut(s) 368, 510, 947
MboI GATC 3 cut(s) 366, 508, 945
MboII GAAGA 5 cut(s) 20, 353, 361, 751, 1028
MflI RGATCY 1 cut(s) 945
MluCI AATT 5 cut(s) 154, 303, 603, 792, 800
MlyI GAGTC 2 cut(s) 465, 549
MroNI GCCGGC 1 cut(s) 149
MseI TTAA 3 cut(s) 489, 990, 1039
MslI CAYNNNNRTG 3 cut(s) 44, 836, 940
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 1 cut(s) 150
MwoI GCNNNNNNNGC 3 cut(s) 732, 828, 890
NaeI GCCGGC 1 cut(s) 151
NdeII GATC 3 cut(s) 366, 508, 945
NgoMIV GCCGGC 1 cut(s) 149
NlaIII CATG 6 cut(s) 254, 562, 623, 689, 974, 1015
NlaIV GGNNCC 1 cut(s) 947
NmeAIII GCCGAG 1 cut(s) 925
NmuCI GTSAC 2 cut(s) 715, 875
PdiI GCCGGC 1 cut(s) 151
PleI GAGTC 2 cut(s) 465, 549
PpsI GAGTC 2 cut(s) 465, 549
PpuMI RGGWCCY 1 cut(s) 848
Psp5II RGGWCCY 1 cut(s) 848
PspFI CCCAGC 1 cut(s) 431
PspN4I GGNNCC 1 cut(s) 947
PspPI GGNCC 3 cut(s) 824, 848, 882
PspPPI RGGWCCY 1 cut(s) 848
PstNI CAGNNNCTG 1 cut(s) 212
PsuI RGATCY 1 cut(s) 945
RseI CAYNNNNRTG 3 cut(s) 44, 836, 940
SaqAI TTAA 3 cut(s) 489, 990, 1039
Sau3AI GATC 3 cut(s) 366, 508, 945
Sau96I GGNCC 3 cut(s) 824, 848, 882
SchI GAGTC 2 cut(s) 465, 549
SetI ASST 8 cut(s) 169, 229, 527, 579, 682, 776, 853, 981
SfaNI GCATC 5 cut(s) 124, 199, 507, 910, 944
SfcI CTRYAG 1 cut(s) 178
SinI GGWCC 2 cut(s) 824, 848
SmiMI CAYNNNNRTG 3 cut(s) 44, 836, 940
SmlI CTYRAG 2 cut(s) 473, 913
SmoI CTYRAG 2 cut(s) 473, 913
Sse9I AATT 5 cut(s) 154, 303, 603, 792, 800
SsiI CCGC 2 cut(s) 32, 822
SspMI CTAG 1 cut(s) 24
TaaI ACNGT 2 cut(s) 316, 617
TaqI TCGA 2 cut(s) 459, 582
TasI AATT 5 cut(s) 154, 303, 603, 792, 800
Tru1I TTAA 3 cut(s) 489, 990, 1039
Tru9I TTAA 3 cut(s) 489, 990, 1039
TscAI CASTG 2 cut(s) 379, 742
TseFI GTSAC 2 cut(s) 715, 875
Tsp45I GTSAC 2 cut(s) 715, 875
TspDTI ATGAA 3 cut(s) 297, 315, 705
TspGWI ACGGA 1 cut(s) 938
TspRI CASTG 2 cut(s) 379, 742
VpaK11BI GGWCC 2 cut(s) 824, 848
XapI RAATTY 1 cut(s) 303
XmiI GTMKAC 2 cut(s) 177, 414
XspI CTAG 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.