Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012775.1

Orthogroup ID

OG0001643

Physical Location & Seq

Genomic Coordinates Forward (+)

24114 .. 25403

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012775.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

atgaagacaccaacctcttggatatgggtgttcaagaagaagaacagcttctctgatgggggaaaaagcggaggattaaagatgaagcaggtgtcgtttatgggagttgtgtgtacagtaatgttattcatcgtgtatagaaccaccaattaccaatatcaggcttataaggagacagagatggaagaaagaatgcatccctttaatcaggaaattcttttgagttccagaaagttggacggtttacctcgtggcataatacaagctaggtcggatttagagctgaggcctttatggctgactagttcaaagttaacggttgattatagcaatcgcaatttactggctattgcagctggtattaagcagaaacatagtgttgatgatattgtgcaaaaggttgattatagcaatcgcaatttattggctattgcagctgggattaagcagaaacatagtgttgatgatattgtgcaaaaggtaatagatttttctacacaacgtttaaaatgctatcaagagacatgcttgacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

178

Amino Acids

20.42

Weight (kDa)

9.49

Isoelectric Point (pI)

26.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240
fragaria_vesca	FvH4_3g04460 FvH4_3g04460 FvH4_3g04460 FvH4_3g04460 FvH4_3g04460
malus_domestica	MD05G1323000.v1.1 MD10G1300800.v1.1
prunus_persica	Prupe.4G039600_v2.0.a1 Prupe.4G039600_v2.0.a1
pyrus_communis	pycom05g29730 pycom10g25370
rosa_chinensis	RchiOBHm_Chr3g0480871 RchiOBHm_Chr5g0006851
rosa_laevigata	RLG00000031434
rosa_multiflora	Rmu_sc0001044.1_g000034 Rmu_sc0002784.1_g000052 Rmu_sc0005956.1_g000005 Rmu_sc0012775.1_g000005
rosa_roxburghii	Rroxscaffold_1G00069200
rosa_rugosa	Rorug01G0182100 Rorug04G0425000 Rorug04G0425100.1
rosa_samantha	Rh5AG052700 Rh5AG052800 Rh5AG071100 Rh5AG371700 Rh5AG433400 Rh5BG051700 Rh5CG060300 Rh5DG050900
rosa_wichuraiana	Rw4G022980 Rw5G005190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	1 cut(s)	79
AciI	CCGC	1 cut(s)	69
AclI	AACGTT	1 cut(s)	502
AcsI	RAATTY	1 cut(s)	213
AfaI	GTAC	1 cut(s)	115
AfiI	CCNNNNNNNGG	1 cut(s)	160
AgsI	TTSAA	2 cut(s)	34, 309
AhlI	ACTAGT	1 cut(s)	302
AluBI	AGCT	5 cut(s)	48, 266, 283, 356, 437
AluI	AGCT	5 cut(s)	48, 266, 283, 356, 437
Alw26I	GTCTC	2 cut(s)	167, 515
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	353, 434
ApoI	RAATTY	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	47
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	11
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	365, 446
BccI	CCATC	2 cut(s)	50, 175
BcoDI	GTCTC	2 cut(s)	167, 515
BcuI	ACTAGT	1 cut(s)	302
BfaI	CTAG	2 cut(s)	267, 303
BfuAI	ACCTGC	1 cut(s)	79
BglI	GCCNNNNNGGC	1 cut(s)	295
BisI	GCNGC	2 cut(s)	354, 435
BlsI	GCNGC	2 cut(s)	355, 436
BmsI	GCATC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	284
Bsc4I	CCNNNNNNNGG	1 cut(s)	160
Bse1I	ACTGG	1 cut(s)	348
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	160
BseMII	CTCAG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	348
BseXI	GCAGC	2 cut(s)	365, 446
BseYI	CCCAGC	1 cut(s)	437
BshFI	GGCC	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	160
BsmAI	GTCTC	2 cut(s)	167, 515
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	289
Bsp1407I	TGTACA	1 cut(s)	113
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	276
BspMI	ACCTGC	1 cut(s)	79
BsrGI	TGTACA	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	348
BssSI	CACGAG	1 cut(s)	249
Bst2BI	CACGAG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	118, 242, 319
BstAUI	TGTACA	1 cut(s)	113
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	196
BstMAI	GTCTC	2 cut(s)	167, 515
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 353, 434
BstNSI	RCATGY	1 cut(s)	528
BstV1I	GCAGC	2 cut(s)	365, 446
BstV2I	GAAGAC	1 cut(s)	11
BstXI	CCANNNNNNTGG	2 cut(s)	18, 235
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	196
BveI	ACCTGC	1 cut(s)	79
Csp6I	GTAC	1 cut(s)	114
CviAII	CATG	1 cut(s)	525
CviQI	GTAC	1 cut(s)	114
DdeI	CTNAG	1 cut(s)	284
DraI	TTTAAA	1 cut(s)	507
Eco147I	AGGCCT	1 cut(s)	289
EcoT22I	ATGCAT	1 cut(s)	198
FaeI	CATG	1 cut(s)	528
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FatI	CATG	1 cut(s)	524
Fnu4HI	GCNGC	2 cut(s)	354, 435
FokI	GGATG	1 cut(s)	183
Fsp4HI	GCNGC	2 cut(s)	354, 435
FspBI	CTAG	2 cut(s)	267, 303
GluI	GCNGC	2 cut(s)	354, 435
GsaI	CCCAGC	1 cut(s)	441
HaeIII	GGCC	1 cut(s)	289
Hin1II	CATG	1 cut(s)	528
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HpaI	GTTAAC	1 cut(s)	315
Hpy166II	GTNNAC	3 cut(s)	114, 245, 315
Hpy188I	TCNGA	2 cut(s)	55, 274
Hpy188III	TCNNGA	4 cut(s)	34, 209, 228, 518
Hpy8I	GTNNAC	3 cut(s)	114, 245, 315
HpyCH4III	ACNGT	3 cut(s)	118, 242, 319
HpyCH4IV	ACGT	1 cut(s)	502
HpyCH4V	TGCA	5 cut(s)	196, 353, 394, 434, 475
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 353, 434
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	1 cut(s)	528
KspAI	GTTAAC	1 cut(s)	315
LpnPI	CCDG	7 cut(s)	74, 146, 194, 241, 329, 342, 423
Lsp1109I	GCAGC	2 cut(s)	365, 446
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	2 cut(s)	267, 303
MaeII	ACGT	1 cut(s)	502
MboII	GAAGA	4 cut(s)	16, 49, 52, 197
MluCI	AATT	4 cut(s)	148, 213, 337, 418
MmeI	TCCRAC	2 cut(s)	216, 252
MnlI	CCTC	4 cut(s)	25, 65, 258, 279
Mph1103I	ATGCAT	1 cut(s)	198
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	6 cut(s)	77, 204, 314, 363, 444, 506
MspA1I	CMGCKG	2 cut(s)	356, 437
Mva1269I	GAATGC	1 cut(s)	198
MwoI	GCNNNNNNNGC	3 cut(s)	295, 353, 434
NlaIII	CATG	1 cut(s)	528
NsiI	ATGCAT	1 cut(s)	198
NspI	RCATGY	1 cut(s)	528
PaqCI	CACCTGC	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	289
PctI	GAATGC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	47
PkrI	GCNGC	2 cut(s)	355, 436
PsiI	TTATAA	1 cut(s)	168
Psp1406I	AACGTT	1 cut(s)	502
PspFI	CCCAGC	1 cut(s)	437
PvuII	CAGCTG	2 cut(s)	356, 437
RsaI	GTAC	1 cut(s)	115
RsaNI	GTAC	1 cut(s)	114
SaqAI	TTAA	6 cut(s)	77, 204, 314, 363, 444, 506
SatI	GCNGC	2 cut(s)	354, 435
SfaNI	GCATC	1 cut(s)	205
SpeI	ACTAGT	1 cut(s)	302
Sse9I	AATT	4 cut(s)	148, 213, 337, 418
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	2 cut(s)	267, 303
StuI	AGGCCT	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	118, 242, 319
TaiI	ACGT	1 cut(s)	505
TasI	AATT	4 cut(s)	148, 213, 337, 418
TatI	WGTACW	1 cut(s)	113
Tru1I	TTAA	6 cut(s)	77, 204, 314, 363, 444, 506
Tru9I	TTAA	6 cut(s)	77, 204, 314, 363, 444, 506
TseI	GCWGC	2 cut(s)	353, 434
TspDTI	ATGAA	3 cut(s)	17, 98, 118
XapI	RAATTY	1 cut(s)	213
XceI	RCATGY	1 cut(s)	528
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	2 cut(s)	267, 303
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.