Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001643

Physical Location & Seq

Genomic Coordinates Forward (+)

30118293 .. 30122300

Gene Structure 4008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g29730.13

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGAAGTCACCAAACTCATGGATATGGATGTTCAAGAAAAAGAATTCTTTTTCTGATGGGGGTAAAAGCGGAATGAAGATGAAGCAGCTGTCATTTATGGGAGTTGTATGTACAGTAATGTTATTCGTTGTGTATAGAACCACCAACTATCAGTATCAAGCTTATCAGCAGACAGAGATGGACGCAAAGTGGAATCCCTTTGACACAGTGAAGGAAATTTTTGTGACTTCGAGAAAGTTGGACGGTTTACCACGTGGCATTATACAACCTAGGTCAGATTTAGAGCAAAGGCCTCTATGGTTGACAAGTAGTTCAAGGTTAAAGGTCGGTGATTACAGCAACCGTAACTTGCTGGCTATTCCGGTTGGTATTAAGCAAAAGGATAGTGTTGATGCTATTGTGGGAAAGTTTCTTCCAGAAAATTTTACCGTTATCCTATTCCATTATGATGGGAATGTTGATGGGTGGTGGATCGATCTTGAGTGGAGTAACGACGCCATACACATAGTTGCCCAAAACCAAACAAAGTGGTGGTTTGCCAAACGCTTTCTACATCCAGATATTGTGTCCATTTATGATTACATATTCCTTTGGGATGAGGATTTGGGGGTTGAGAATTTTCATCCAGGAAGATACCTTGAAATTGTAAAAGAAGCGGGACTGGAGATATCTCAGCCAGCTTTGCATCCAAATTCAACAGATATACATCATAGAATTACAATTCGTGCTAAAAAAAAGAAGTTTCATAGAAGAGTCTATGACACCAGAGGCAGCACAAAGTGTACAGAAGCAAGTCAGGGACCACCATGCACCGGGTTTGTGGAAGGCATGGCTCCGGTTTTTTCAAGAGCTGCCTGGCATTGTACTTGGCATCTTATACAGAATGATCTTGTACATGGATGGGGTCTGGACATGAAACTTGGGTATTGTGCACAGGGAGACCGTACCAAGAAAGTCGGAGTTGTTGATAGTGAATATATTGTTCATAAGGGAATACAAACTTTGGGAGAAGGTGGTTCGTCGACAAACAAGGTTCCTGAGAAGAAGAGTAAGAAACGAGCTGCTCCTGGGCATGACATGCGAATTGAGATTAGGAGGCAGTCTACACGGGAGTATACAACCTTCAAAGAGCGGTGGAATAACGCAGTAGAAGAGGACTTGAACTGGATTGATCCATTTAAAAGCAGCCTAAAACGCAGGAAACAGCGTAGACGCAACAACCAGTTGAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

412

Amino Acids

47.67

Weight (kDa)

9.53

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240
fragaria_vesca	FvH4_3g04460 FvH4_3g04460 FvH4_3g04460 FvH4_3g04460 FvH4_3g04460
malus_domestica	MD05G1323000.v1.1 MD10G1300800.v1.1
prunus_persica	Prupe.4G039600_v2.0.a1 Prupe.4G039600_v2.0.a1
pyrus_communis	pycom05g29730 pycom10g25370
rosa_chinensis	RchiOBHm_Chr3g0480871 RchiOBHm_Chr5g0006851
rosa_laevigata	RLG00000031434
rosa_multiflora	Rmu_sc0001044.1_g000034 Rmu_sc0002784.1_g000052 Rmu_sc0005956.1_g000005 Rmu_sc0012775.1_g000005
rosa_roxburghii	Rroxscaffold_1G00069200
rosa_rugosa	Rorug01G0182100 Rorug04G0425000 Rorug04G0425100.1
rosa_samantha	Rh5AG052700 Rh5AG052800 Rh5AG071100 Rh5AG371700 Rh5AG433400 Rh5BG051700 Rh5CG060300 Rh5DG050900
rosa_wichuraiana	Rw4G022980 Rw5G005190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1132
AccI	GTMKAC	4 cut(s)	1022, 1103, 1115, 1210
AciI	CCGC	3 cut(s)	69, 656, 1132
AclWI	GGATC	2 cut(s)	479, 1166
AcsI	RAATTY	5 cut(s)	43, 216, 421, 616, 691
AcvI	CACGTG	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	780
AfaI	GTAC	5 cut(s)	112, 784, 865, 894, 946
AfiI	CCNNNNNNNGG	1 cut(s)	812
AgsI	TTSAA	7 cut(s)	34, 315, 641, 696, 846, 1126, 1162
AjnI	CCWGG	3 cut(s)	625, 854, 1066
AluBI	AGCT	6 cut(s)	88, 161, 680, 851, 1061, 1230
AluI	AGCT	6 cut(s)	88, 161, 680, 851, 1061, 1230
Alw21I	GWGCWC	2 cut(s)	934, 1232
Alw26I	GTCTC	1 cut(s)	933
Alw44I	GTGCAC	1 cut(s)	930
AlwI	GGATC	2 cut(s)	479, 1166
AoxI	GGCC	1 cut(s)	290
ApaLI	GTGCAC	1 cut(s)	930
ApeKI	GCWGC	5 cut(s)	85, 771, 851, 1061, 1185
ApoI	RAATTY	5 cut(s)	43, 216, 421, 616, 691
AspA2I	CCTAGG	1 cut(s)	269
AspS9I	GGNCC	1 cut(s)	800
AsuC2I	CCSGG	1 cut(s)	814
AsuHPI	GGTGA	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	800
AvrII	CCTAGG	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	934
BanII	GRGCYC	1 cut(s)	1232
BarI	GAAGNNNNNNTAC	2 cut(s)	1106, 1138
BbrPI	CACGTG	1 cut(s)	254
Bbv12I	GWGCWC	2 cut(s)	934, 1232
BbvI	GCAGC	5 cut(s)	97, 783, 838, 1048, 1197
BccI	CCATC	5 cut(s)	50, 172, 443, 455, 894
BciT130I	CCWGG	3 cut(s)	627, 856, 1068
BcnI	CCSGG	1 cut(s)	814
BcoDI	GTCTC	1 cut(s)	933
BfaI	CTAG	1 cut(s)	270
BisI	GCNGC	5 cut(s)	86, 772, 852, 1062, 1186
BlnI	CCTAGG	1 cut(s)	269
BlsI	GCNGC	5 cut(s)	87, 773, 853, 1063, 1187
Bme1390I	CCNGG	4 cut(s)	627, 814, 856, 1068
Bme18I	GGWCC	1 cut(s)	800
BmgT120I	GGNCC	1 cut(s)	800
BmiI	GGNNCC	3 cut(s)	801, 834, 1035
BmrFI	CCNGG	4 cut(s)	627, 814, 856, 1068
BmsI	GCATC	3 cut(s)	382, 694, 880
BpmI	CTGGAG	1 cut(s)	683
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	814
Bsa29I	ATCGAT	1 cut(s)	474
BsaAI	YACGTR	1 cut(s)	254
BsaBI	GATNNNNATC	1 cut(s)	705
BsaHI	GRCGYC	1 cut(s)	495
BsaI	GGTCTC	1 cut(s)	933
BsaJI	CCNNGG	2 cut(s)	269, 1067
BsaWI	WCCGGW	2 cut(s)	361, 835
Bsc4I	CCNNNNNNNGG	1 cut(s)	812
Bse1I	ACTGG	3 cut(s)	666, 1169, 1222
Bse8I	GATNNNNATC	1 cut(s)	705
BseBI	CCWGG	3 cut(s)	627, 856, 1068
BseCI	ATCGAT	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	269, 1067
BseGI	GGATG	6 cut(s)	33, 553, 601, 622, 685, 905
BseJI	GATNNNNATC	1 cut(s)	705
BseLI	CCNNNNNNNGG	1 cut(s)	812
BseMII	CTCAG	2 cut(s)	686, 1029
BseNI	ACTGG	3 cut(s)	666, 1169, 1222
BseSI	GKGCMC	1 cut(s)	934
BseXI	GCAGC	5 cut(s)	97, 783, 838, 1048, 1197
BshFI	GGCC	1 cut(s)	292
BshVI	ATCGAT	1 cut(s)	474
BsiHKAI	GWGCWC	2 cut(s)	934, 1232
BsiSI	CCGG	3 cut(s)	362, 813, 836
BslFI	GGGAC	2 cut(s)	672, 813
BslI	CCNNNNNNNGG	1 cut(s)	812
BsmAI	GTCTC	1 cut(s)	933
BsmFI	GGGAC	2 cut(s)	672, 813
BsnI	GGCC	1 cut(s)	292
Bso31I	GGTCTC	1 cut(s)	933
Bsp1286I	GDGCHC	2 cut(s)	934, 1232
Bsp1407I	TGTACA	3 cut(s)	110, 782, 892
Bsp143I	GATC	4 cut(s)	471, 475, 886, 1171
BspACI	CCGC	3 cut(s)	69, 656, 1132
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	2 cut(s)	685, 1030
BspDI	ATCGAT	1 cut(s)	474
BspLI	GGNNCC	3 cut(s)	801, 834, 1035
BspPI	GGATC	2 cut(s)	479, 1166
BspTNI	GGTCTC	1 cut(s)	933
BsrBI	CCGCTC	1 cut(s)	1132
BsrGI	TGTACA	3 cut(s)	110, 782, 892
BsrI	ACTGG	3 cut(s)	666, 1169, 1222
BssECI	CCNNGG	2 cut(s)	269, 1067
BssMI	GATC	4 cut(s)	471, 475, 886, 1171
BssNAI	GTATAC	1 cut(s)	1116
BssNI	GRCGYC	1 cut(s)	495
BssT1I	CCWWGG	1 cut(s)	269
Bst1107I	GTATAC	1 cut(s)	1116
Bst2UI	CCWGG	3 cut(s)	627, 856, 1068
Bst4CI	ACNGT	6 cut(s)	115, 208, 245, 344, 430, 944
Bst6I	CTCTTC	3 cut(s)	745, 1040, 1146
BstACI	GRCGYC	1 cut(s)	495
BstAPI	GCANNNNNTGC	1 cut(s)	1078
BstAUI	TGTACA	3 cut(s)	110, 782, 892
BstBAI	YACGTR	1 cut(s)	254
BstC8I	GCNNGC	2 cut(s)	354, 678
BstDEI	CTNAG	2 cut(s)	672, 1038
BstF5I	GGATG	6 cut(s)	33, 553, 601, 622, 685, 905
BstKTI	GATC	4 cut(s)	474, 478, 889, 1174
BstMAI	GTCTC	1 cut(s)	933
BstMBI	GATC	4 cut(s)	471, 475, 886, 1171
BstMWI	GCNNNNNNNGC	3 cut(s)	682, 1078, 1194
BstNI	CCWGG	3 cut(s)	627, 856, 1068
BstNSI	RCATGY	1 cut(s)	1081
BstSCI	CCNGG	4 cut(s)	625, 812, 854, 1066
BstSLI	GKGCMC	1 cut(s)	934
BstV1I	GCAGC	5 cut(s)	97, 783, 838, 1048, 1197
BstXI	CCANNNNNNTGG	2 cut(s)	18, 449
BstZ17I	GTATAC	1 cut(s)	1116
Bsu15I	ATCGAT	1 cut(s)	474
BsuRI	GGCC	1 cut(s)	292
BsuTUI	ATCGAT	1 cut(s)	474
BtsCI	GGATG	6 cut(s)	33, 553, 601, 622, 685, 905
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	354, 678
Cfr13I	GGNCC	1 cut(s)	800
ClaI	ATCGAT	1 cut(s)	474
CseI	GACGC	3 cut(s)	191, 503, 1221
Csp6I	GTAC	5 cut(s)	111, 783, 864, 893, 945
CspCI	CAANNNNNGTGG	2 cut(s)	509, 544
CviAII	CATG	7 cut(s)	18, 807, 829, 896, 913, 1073, 1078
CviQI	GTAC	5 cut(s)	111, 783, 864, 893, 945
DdeI	CTNAG	2 cut(s)	672, 1038
DpnI	GATC	4 cut(s)	473, 477, 888, 1173
DpnII	GATC	4 cut(s)	471, 475, 886, 1171
DraI	TTTAAA	1 cut(s)	1180
DraIII	CACNNNGTG	1 cut(s)	780
Eam1104I	CTCTTC	3 cut(s)	745, 1040, 1146
EarI	CTCTTC	3 cut(s)	745, 1040, 1146
Ecl136II	GAGCTC	1 cut(s)	1230
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	1232
Eco31I	GGTCTC	1 cut(s)	933
Eco32I	GATATC	1 cut(s)	669
Eco47I	GGWCC	1 cut(s)	800
Eco53kI	GAGCTC	1 cut(s)	1230
Eco72I	CACGTG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	1230
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	625, 854, 1066
EcoRV	GATATC	1 cut(s)	669
EcoT14I	CCWWGG	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	1232
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	7 cut(s)	21, 810, 832, 899, 916, 1076, 1081
FaqI	GGGAC	2 cut(s)	672, 813
FatI	CATG	7 cut(s)	17, 806, 828, 895, 912, 1072, 1077
FauI	CCCGC	1 cut(s)	649
FblI	GTMKAC	4 cut(s)	1022, 1103, 1115, 1210
Fnu4HI	GCNGC	5 cut(s)	86, 772, 852, 1062, 1186
FokI	GGATG	6 cut(s)	40, 540, 608, 609, 672, 912
FriOI	GRGCYC	1 cut(s)	1232
Fsp4HI	GCNGC	5 cut(s)	86, 772, 852, 1062, 1186
FspBI	CTAG	1 cut(s)	270
GluI	GCNGC	5 cut(s)	86, 772, 852, 1062, 1186
GsuI	CTGGAG	1 cut(s)	683
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	3 cut(s)	362, 813, 836
HgaI	GACGC	3 cut(s)	191, 503, 1221
Hin1I	GRCGYC	1 cut(s)	495
Hin1II	CATG	7 cut(s)	21, 810, 832, 899, 916, 1076, 1081
HincII	GTYRAC	2 cut(s)	303, 1023
HindII	GTYRAC	2 cut(s)	303, 1023
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	2 cut(s)	193, 753
HpaII	CCGG	3 cut(s)	362, 813, 836
HphI	GGTGA	1 cut(s)	341
Hpy166II	GTNNAC	8 cut(s)	248, 303, 783, 932, 1023, 1104, 1116, 1211
Hpy188I	TCNGA	3 cut(s)	55, 277, 959
Hpy188III	TCNNGA	8 cut(s)	34, 231, 416, 479, 557, 846, 908, 1037
Hpy8I	GTNNAC	8 cut(s)	248, 303, 783, 932, 1023, 1104, 1116, 1211
Hpy99I	CGWCG	2 cut(s)	497, 1024
HpyAV	CCTTC	4 cut(s)	205, 818, 1004, 1132
HpyCH4III	ACNGT	6 cut(s)	115, 208, 245, 344, 430, 944
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	3 cut(s)	685, 810, 932
HpyF10VI	GCNNNNNNNGC	3 cut(s)	682, 1078, 1194
HpyF3I	CTNAG	2 cut(s)	672, 1038
HpySE526I	ACGT	1 cut(s)	253
Hsp92I	GRCGYC	1 cut(s)	495
Hsp92II	CATG	7 cut(s)	21, 810, 832, 899, 916, 1076, 1081
Kzo9I	GATC	4 cut(s)	471, 475, 886, 1171
LmnI	GCTCC	2 cut(s)	838, 1069
Lsp1109I	GCAGC	5 cut(s)	97, 783, 838, 1048, 1197
LweI	GCATC	3 cut(s)	382, 694, 880
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	4 cut(s)	6, 223, 344, 488
MalI	GATC	4 cut(s)	473, 477, 888, 1173
MbiI	CCGCTC	1 cut(s)	1132
MboI	GATC	4 cut(s)	471, 475, 886, 1171
MboII	GAAGA	7 cut(s)	88, 404, 642, 762, 1054, 1057, 1163
MhlI	GDGCHC	2 cut(s)	934, 1232
MluCI	AATT	9 cut(s)	43, 216, 421, 616, 642, 691, 714, 720, 1083
MlyI	GAGTC	1 cut(s)	762
MmeI	TCCRAC	2 cut(s)	219, 937
MnlI	CCTC	5 cut(s)	303, 592, 761, 1089, 1147
MseI	TTAA	4 cut(s)	320, 372, 1179, 1234
MslI	CAYNNNNRTG	2 cut(s)	22, 447
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	3 cut(s)	362, 813, 836
MspR9I	CCNGG	4 cut(s)	627, 814, 856, 1068
MvaI	CCWGG	3 cut(s)	627, 856, 1068
MwoI	GCNNNNNNNGC	3 cut(s)	682, 1078, 1194
NciI	CCSGG	1 cut(s)	814
NdeII	GATC	4 cut(s)	471, 475, 886, 1171
NlaIII	CATG	7 cut(s)	21, 810, 832, 899, 916, 1076, 1081
NlaIV	GGNNCC	3 cut(s)	801, 834, 1035
NmuCI	GTSAC	2 cut(s)	6, 223
NspI	RCATGY	1 cut(s)	1081
PceI	AGGCCT	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	193
PfoI	TCCNGGA	1 cut(s)	625
PkrI	GCNGC	5 cut(s)	87, 773, 853, 1063, 1187
PleI	GAGTC	1 cut(s)	761
PmaCI	CACGTG	1 cut(s)	254
PmlI	CACGTG	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	761
Ppu21I	YACGTR	1 cut(s)	254
Psp124BI	GAGCTC	1 cut(s)	1232
Psp6I	CCWGG	3 cut(s)	625, 854, 1066
PspCI	CACGTG	1 cut(s)	254
PspGI	CCWGG	3 cut(s)	625, 854, 1066
PspN4I	GGNNCC	3 cut(s)	801, 834, 1035
PspPI	GGNCC	1 cut(s)	800
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	5 cut(s)	112, 784, 865, 894, 946
RsaNI	GTAC	5 cut(s)	111, 783, 864, 893, 945
RseI	CAYNNNNRTG	2 cut(s)	22, 447
SacI	GAGCTC	1 cut(s)	1232
SalI	GTCGAC	1 cut(s)	1021
SaqAI	TTAA	4 cut(s)	320, 372, 1179, 1234
SatI	GCNGC	5 cut(s)	86, 772, 852, 1062, 1186
Sau3AI	GATC	4 cut(s)	471, 475, 886, 1171
Sau96I	GGNCC	1 cut(s)	800
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	4 cut(s)	627, 814, 856, 1068
SduI	GDGCHC	2 cut(s)	934, 1232
SfaNI	GCATC	3 cut(s)	382, 694, 880
SinI	GGWCC	1 cut(s)	800
SmiMI	CAYNNNNRTG	2 cut(s)	22, 447
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	9 cut(s)	43, 216, 421, 616, 642, 691, 714, 720, 1083
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	3 cut(s)	69, 656, 1132
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	1232
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	4 cut(s)	625, 812, 854, 1066
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	6 cut(s)	115, 208, 245, 344, 430, 944
TaiI	ACGT	1 cut(s)	256
TaqI	TCGA	3 cut(s)	230, 474, 1022
TasI	AATT	9 cut(s)	43, 216, 421, 616, 642, 691, 714, 720, 1083
TatI	WGTACW	4 cut(s)	110, 782, 863, 892
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	4 cut(s)	320, 372, 1179, 1234
Tru9I	TTAA	4 cut(s)	320, 372, 1179, 1234
TscAI	CASTG	1 cut(s)	213
TseFI	GTSAC	2 cut(s)	6, 223
TseI	GCWGC	5 cut(s)	85, 771, 851, 1061, 1185
Tsp45I	GTSAC	2 cut(s)	6, 223
TspDTI	ATGAA	7 cut(s)	17, 89, 95, 611, 734, 929, 974
TspRI	CASTG	1 cut(s)	213
VneI	GTGCAC	1 cut(s)	930
VpaK11BI	GGWCC	1 cut(s)	800
XapI	RAATTY	5 cut(s)	43, 216, 421, 616, 691
XceI	RCATGY	1 cut(s)	1081
XmaJI	CCTAGG	1 cut(s)	269
XmiI	GTMKAC	4 cut(s)	1022, 1103, 1115, 1210
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.