FvH4_3g04460

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001643
Physical Location & Seq
Reverse (-)
2553666 .. 2558651
4986 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g04460.t2

Sequence Viewer

Length: 1224 bp
ATGTCGATGAAGTCGTCTTCTTACTCATGGATATGGGTGTTCAAGAAGAAGAATAGCTTCTCTGATGGGGGAAAAAACGGAGGATTAAAGATGAAGCAGGTCTCATTTATGGGAGTTGTGTGTACAGTAATGTTGTTCATTGTGTACAGAACCACCAATTATCAATATCAGGCTTATAAGGAGGCAGAGATGGAAGGAAAAATGCATCCCTTTAACCAGGAAATTCTTTTGAGTTCCAGAGCATTGGATGGTTTGCCTCGTGGCATAGTACAAGCTAGGTCGGATTTAGAGCTGAGGCCTTTGTGGCTGAGTAGTTCAAAGTTAAAGGTTGATTATAGCAATCGCAACTTGCTGGCTATGCCAGTTGGTATTAAGCAGAAAGATAATGTTGACGAAATTGTGCAAAAGTTTCTTCCAGAAAACTTTACAATTATACTCTTCCATTATGATGGGGATGTTAAAGGATGGTGGGATCTTGAGTGGAGTGATGAGGCCATACACATAGTTGCCCGCAACCAAACAAAGTGGTGGTTTGCAAAACGATTTCTACATCCAGATGTTGTGTCCATATATGATTACATATTCCTCTGGGATGAAGATTTGGGGGTTGAGAATTTCAACCCAGCAAGGTACCTTGAAATTGTGAGAGGAGCAGGACTGGAGATATCTCAGCCAGCTTTGCATCCAAATTCAACTGAAATACATCATAGAATTACAGTTCGTGCTAAAAAAAAGAAGTTCCATAGAAGAATTTATGATAGCAGAGGCAGTGTGAAGTGTACTGAGGAAAGTCAAGGACCACCATGCACTGGGTTTGTTGAAGGTATGGCCCCGGTCTTTTCAAGATCTGCCTGGGATTGCACTTGGCATCTTATACAGAATGATCTCGTACATGGATGGGGTCTGGACATGAAGCTTGGGTATTGTGCGCAGGGGGACCGTTCAAAAAATGTGGGAGTTGTTGATGTTGAATATATTTTTCATAAGGGTATACAAAGTTTGGGTGGGGGTGACTCTCAGGAAAGAAAGGTTTCCAATTCTAAGAAGAAACGCATTGTTTCAAATCATGATGGAAGAACCGAGATTCGGAGGCAATCAACGCGGGAGTTTACAGTGTTCAAAGAACGGTGGAATCGTGCTGTAGAAGAGGACAAGAAGTGGATTGATCCATTCAAGAATGACCAAAGACGGAGAAAGAAACAGCGGTTACGCAGCAACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

408

Amino Acids

47.49

Weight (kDa)

9.48

Isoelectric Point (pI)

54.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 81 - 343 9.1e-129 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
Acc16I TGCGCA 1 cut(s) 930
Acc36I ACCTGC 1 cut(s) 88
Acc65I GGTACC 1 cut(s) 630
AccB1I GGYRCC 1 cut(s) 630
AccB7I CCANNNNNTGG 1 cut(s) 809
AccI GTMKAC 1 cut(s) 991
AccII CGCG 1 cut(s) 1102
AciI CCGC 3 cut(s) 511, 1102, 1204
AclWI GGATC 2 cut(s) 480, 1160
AcsI RAATTY 4 cut(s) 222, 613, 688, 750
AfaI GTAC 6 cut(s) 124, 146, 270, 632, 781, 891
AfiI CCNNNNNNNGG 2 cut(s) 809, 1086
AjnI CCWGG 2 cut(s) 216, 851
AluBI AGCT 5 cut(s) 57, 275, 292, 677, 916
AluI AGCT 5 cut(s) 57, 275, 292, 677, 916
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 2 cut(s) 480, 1160
AoxI GGCC 3 cut(s) 296, 492, 828
ApeKI GCWGC 1 cut(s) 1212
ApoI RAATTY 4 cut(s) 222, 613, 688, 750
Asp700I GAANNNNTTC 2 cut(s) 56, 1030
Asp718I GGTACC 1 cut(s) 630
AspLEI GCGC 1 cut(s) 931
AspS9I GGNCC 3 cut(s) 797, 829, 937
AsuC2I CCSGG 1 cut(s) 833
AsuHPI GGTGA 1 cut(s) 1022
AvaII GGWCC 2 cut(s) 797, 937
BanI GGYRCC 1 cut(s) 630
BauI CACGAG 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 9
BbvCI CCTCAGC 1 cut(s) 293
BccI CCATC 7 cut(s) 59, 184, 242, 443, 459, 891, 1064
BciT130I CCWGG 2 cut(s) 218, 853
BcnI CCSGG 1 cut(s) 833
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 1 cut(s) 276
BfmI CTRYAG 1 cut(s) 1140
BfuAI ACCTGC 1 cut(s) 88
BglI GCCNNNNNGGC 1 cut(s) 304
BglII AGATCT 1 cut(s) 845
BisI GCNGC 1 cut(s) 1213
BlsI GCNGC 1 cut(s) 1214
Bme1390I CCNGG 3 cut(s) 218, 833, 853
Bme18I GGWCC 2 cut(s) 797, 937
BmgT120I GGNCC 3 cut(s) 797, 829, 937
BmiI GGNNCC 3 cut(s) 632, 831, 938
BmrFI CCNGG 3 cut(s) 218, 833, 853
BmrI ACTGGG 1 cut(s) 819
BmsI GCATC 3 cut(s) 214, 691, 877
BmuI ACTGGG 1 cut(s) 819
BpiI GAAGAC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 680
Bpu10I CCTNAGC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 497
BpuMI CCSGG 1 cut(s) 833
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 831, 852
Bsc4I CCNNNNNNNGG 2 cut(s) 809, 1086
Bse1I ACTGG 3 cut(s) 362, 663, 814
BseBI CCWGG 2 cut(s) 218, 853
BseDI CCNNGG 2 cut(s) 831, 852
BseGI GGATG 8 cut(s) 205, 253, 460, 470, 550, 598, 682, 902
BseLI CCNNNNNNNGG 2 cut(s) 809, 1086
BseMII CTCAG 5 cut(s) 284, 299, 683, 774, 1031
BseNI ACTGG 3 cut(s) 362, 663, 814
BseRI GAGGAG 1 cut(s) 663
BseYI CCCAGC 1 cut(s) 622
Bsh1236I CGCG 1 cut(s) 1102
BshFI GGCC 3 cut(s) 298, 494, 830
BshNI GGYRCC 1 cut(s) 630
BsiSI CCGG 1 cut(s) 833
BslFI GGGAC 1 cut(s) 950
BslI CCNNNNNNNGG 2 cut(s) 809, 1086
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 950
BsnI GGCC 3 cut(s) 298, 494, 830
Bso31I GGTCTC 1 cut(s) 106
Bsp1407I TGTACA 2 cut(s) 122, 144
Bsp143I GATC 4 cut(s) 472, 845, 883, 1165
BspACI CCGC 3 cut(s) 511, 1102, 1204
BspANI GGCC 3 cut(s) 298, 494, 830
BspCNI CTCAG 5 cut(s) 285, 300, 682, 775, 1030
BspFNI CGCG 1 cut(s) 1102
BspHI TCATGA 1 cut(s) 1066
BspLI GGNNCC 3 cut(s) 632, 831, 938
BspMI ACCTGC 1 cut(s) 88
BspPI GGATC 2 cut(s) 480, 1160
BspT107I GGYRCC 1 cut(s) 630
BspTNI GGTCTC 1 cut(s) 106
BsrGI TGTACA 2 cut(s) 122, 144
BsrI ACTGG 3 cut(s) 362, 663, 814
BssECI CCNNGG 2 cut(s) 831, 852
BssMI GATC 4 cut(s) 472, 845, 883, 1165
BssNAI GTATAC 1 cut(s) 992
BssSI CACGAG 1 cut(s) 258
Bst1107I GTATAC 1 cut(s) 992
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 218, 853
Bst4CI ACNGT 5 cut(s) 127, 718, 941, 1114, 1128
Bst6I CTCTTC 2 cut(s) 443, 1140
BstAUI TGTACA 2 cut(s) 122, 144
BstC8I GCNNGC 3 cut(s) 354, 511, 675
BstDEI CTNAG 6 cut(s) 293, 308, 669, 783, 1017, 1041
BstF5I GGATG 8 cut(s) 205, 253, 460, 470, 550, 598, 682, 902
BstFNI CGCG 1 cut(s) 1102
BstHHI GCGC 1 cut(s) 931
BstKTI GATC 4 cut(s) 475, 848, 886, 1168
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 4 cut(s) 472, 845, 883, 1165
BstMWI GCNNNNNNNGC 4 cut(s) 304, 358, 679, 1099
BstNI CCWGG 2 cut(s) 218, 853
BstSCI CCNGG 3 cut(s) 216, 831, 851
BstSFI CTRYAG 1 cut(s) 1140
BstUI CGCG 1 cut(s) 1102
BstV2I GAAGAC 1 cut(s) 9
BstX2I RGATCY 2 cut(s) 472, 845
BstXI CCANNNNNNTGG 2 cut(s) 244, 449
BstYI RGATCY 2 cut(s) 472, 845
BstZ17I GTATAC 1 cut(s) 992
BsuRI GGCC 3 cut(s) 298, 494, 830
BtsCI GGATG 8 cut(s) 205, 253, 460, 470, 550, 598, 682, 902
BtsI GCAGTG 1 cut(s) 775
BtsIMutI CAGTG 3 cut(s) 775, 807, 1119
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 3 cut(s) 354, 511, 675
CciI TCATGA 1 cut(s) 1066
CfoI GCGC 1 cut(s) 931
Cfr13I GGNCC 3 cut(s) 797, 829, 937
Csp6I GTAC 6 cut(s) 123, 145, 269, 631, 780, 890
CspCI CAANNNNNGTGG 4 cut(s) 506, 541, 933, 968
CviAII CATG 5 cut(s) 27, 804, 893, 910, 1067
CviQI GTAC 6 cut(s) 123, 145, 269, 631, 780, 890
DdeI CTNAG 6 cut(s) 293, 308, 669, 783, 1017, 1041
DpnI GATC 4 cut(s) 474, 847, 885, 1167
DpnII GATC 4 cut(s) 472, 845, 883, 1165
Eam1104I CTCTTC 2 cut(s) 443, 1140
EarI CTCTTC 2 cut(s) 443, 1140
Eco147I AGGCCT 1 cut(s) 298
Eco31I GGTCTC 1 cut(s) 106
Eco32I GATATC 1 cut(s) 666
Eco47I GGWCC 2 cut(s) 797, 937
EcoRII CCWGG 2 cut(s) 216, 851
EcoRV GATATC 1 cut(s) 666
EcoT22I ATGCAT 1 cut(s) 207
FaeI CATG 5 cut(s) 30, 807, 896, 913, 1070
FalI AAGNNNNNCTT 2 cut(s) 41, 73
FaqI GGGAC 1 cut(s) 950
FatI CATG 5 cut(s) 26, 803, 892, 909, 1066
FauI CCCGC 2 cut(s) 518, 1095
FblI GTMKAC 1 cut(s) 991
Fnu4HI GCNGC 1 cut(s) 1213
FokI GGATG 8 cut(s) 192, 260, 467, 477, 537, 605, 669, 909
Fsp4HI GCNGC 1 cut(s) 1213
FspBI CTAG 1 cut(s) 276
FspI TGCGCA 1 cut(s) 930
GlaI GCGC 1 cut(s) 930
GluI GCNGC 1 cut(s) 1213
GsaI CCCAGC 1 cut(s) 626
GsuI CTGGAG 1 cut(s) 680
HaeIII GGCC 3 cut(s) 298, 494, 830
HapII CCGG 1 cut(s) 833
HhaI GCGC 1 cut(s) 931
Hin1II CATG 5 cut(s) 30, 807, 896, 913, 1070
Hin6I GCGC 1 cut(s) 929
HinP1I GCGC 1 cut(s) 929
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 914
HinfI GANTC 3 cut(s) 1013, 1084, 1132
HpaII CCGG 1 cut(s) 833
HphI GGTGA 1 cut(s) 1022
Hpy166II GTNNAC 6 cut(s) 123, 145, 391, 780, 992, 1110
Hpy188I TCNGA 3 cut(s) 64, 283, 1089
Hpy8I GTNNAC 6 cut(s) 123, 145, 391, 780, 992, 1110
HpyAV CCTTC 2 cut(s) 188, 815
HpyCH4III ACNGT 5 cut(s) 127, 718, 941, 1114, 1128
HpyCH4V TGCA 6 cut(s) 205, 403, 536, 682, 807, 861
HpyF10VI GCNNNNNNNGC 4 cut(s) 304, 358, 679, 1099
HpyF3I CTNAG 6 cut(s) 293, 308, 669, 783, 1017, 1041
Hsp92II CATG 5 cut(s) 30, 807, 896, 913, 1070
HspAI GCGC 1 cut(s) 929
KpnI GGTACC 1 cut(s) 634
Kzo9I GATC 4 cut(s) 472, 845, 883, 1165
LmnI GCTCC 1 cut(s) 650
LweI GCATC 3 cut(s) 214, 691, 877
MaeI CTAG 1 cut(s) 276
MaeIII GTNAC 2 cut(s) 1010, 1206
MalI GATC 4 cut(s) 474, 847, 885, 1167
MboI GATC 4 cut(s) 472, 845, 883, 1165
MflI RGATCY 2 cut(s) 472, 845
MlyI GAGTC 1 cut(s) 1007
MmeI TCCRAC 1 cut(s) 261
Mph1103I ATGCAT 1 cut(s) 207
MroXI GAANNNNTTC 2 cut(s) 56, 1030
MseI TTAA 5 cut(s) 86, 213, 323, 372, 459
MslI CAYNNNNRTG 3 cut(s) 31, 447, 555
MspA1I CMGCKG 1 cut(s) 1204
MspI CCGG 1 cut(s) 833
MspR9I CCNGG 3 cut(s) 218, 833, 853
MvaI CCWGG 2 cut(s) 218, 853
MvnI CGCG 1 cut(s) 1102
MwoI GCNNNNNNNGC 4 cut(s) 304, 358, 679, 1099
NciI CCSGG 1 cut(s) 833
NdeII GATC 4 cut(s) 472, 845, 883, 1165
NlaIII CATG 5 cut(s) 30, 807, 896, 913, 1070
NlaIV GGNNCC 3 cut(s) 632, 831, 938
NmuCI GTSAC 1 cut(s) 1010
NsbI TGCGCA 1 cut(s) 930
NsiI ATGCAT 1 cut(s) 207
PagI TCATGA 1 cut(s) 1066
PceI AGGCCT 1 cut(s) 298
PcsI WCGNNNNNNNCGW 2 cut(s) 11, 1132
PdmI GAANNNNTTC 2 cut(s) 56, 1030
PfeI GAWTC 2 cut(s) 1084, 1132
PflMI CCANNNNNTGG 1 cut(s) 809
PkrI GCNGC 1 cut(s) 1214
PleI GAGTC 1 cut(s) 1007
PpsI GAGTC 1 cut(s) 1007
PsiI TTATAA 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 216, 851
PspFI CCCAGC 1 cut(s) 622
PspGI CCWGG 2 cut(s) 216, 851
PspN4I GGNNCC 3 cut(s) 632, 831, 938
PspPI GGNCC 3 cut(s) 797, 829, 937
PsuI RGATCY 2 cut(s) 472, 845
RsaI GTAC 6 cut(s) 124, 146, 270, 632, 781, 891
RsaNI GTAC 6 cut(s) 123, 145, 269, 631, 780, 890
RseI CAYNNNNRTG 3 cut(s) 31, 447, 555
SaqAI TTAA 5 cut(s) 86, 213, 323, 372, 459
SatI GCNGC 1 cut(s) 1213
Sau3AI GATC 4 cut(s) 472, 845, 883, 1165
Sau96I GGNCC 3 cut(s) 797, 829, 937
SchI GAGTC 1 cut(s) 1007
ScrFI CCNGG 3 cut(s) 218, 833, 853
SfaNI GCATC 3 cut(s) 214, 691, 877
SfcI CTRYAG 1 cut(s) 1140
SinI GGWCC 2 cut(s) 797, 937
SmiMI CAYNNNNRTG 3 cut(s) 31, 447, 555
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SseBI AGGCCT 1 cut(s) 298
SsiI CCGC 3 cut(s) 511, 1102, 1204
SspMI CTAG 1 cut(s) 276
StuI AGGCCT 1 cut(s) 298
StyD4I CCNGG 3 cut(s) 216, 831, 851
TaaI ACNGT 5 cut(s) 127, 718, 941, 1114, 1128
TaqI TCGA 1 cut(s) 5
TatI WGTACW 4 cut(s) 122, 144, 268, 779
TfiI GAWTC 2 cut(s) 1084, 1132
Tru1I TTAA 5 cut(s) 86, 213, 323, 372, 459
Tru9I TTAA 5 cut(s) 86, 213, 323, 372, 459
TscAI CASTG 3 cut(s) 775, 814, 1119
TseFI GTSAC 1 cut(s) 1010
TseI GCWGC 1 cut(s) 1212
Tsp45I GTSAC 1 cut(s) 1010
TspDTI ATGAA 6 cut(s) 23, 107, 127, 609, 926, 971
TspGWI ACGGA 2 cut(s) 93, 1204
TspRI CASTG 3 cut(s) 775, 814, 1119
Van91I CCANNNNNTGG 1 cut(s) 809
VpaK11BI GGWCC 2 cut(s) 797, 937
XapI RAATTY 4 cut(s) 222, 613, 688, 750
XmiI GTMKAC 1 cut(s) 991
XmnI GAANNNNTTC 2 cut(s) 56, 1030
XspI CTAG 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.