Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001044.1

Orthogroup ID

OG0001643

Physical Location & Seq

Genomic Coordinates Forward (+)

118511 .. 120886

Gene Structure 2376 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001044.1_g000034.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

atgaagacaccaacctcttggatatgggtgttcaagaagaagaacagcttctctgatgggggaaaaagcggaggattaaagatgaagcaggtgtcgtttatgggagttgtgtgtacagtaatgttattcatcgtgtatagaaccaccaattaccaatatcaggcttataaggagacagagatggaagaaagaatgcatccctttaatcaggaaaattcttttgagttccagaaagttgcacggtttgccttgtggcatagtacaactaggtcggatagaattacagttcgtgctaaaaaaaagaagttccatagaagagtttatgatagtagaggcagtgtgaagtgtacggaggaaagtcgaggaccaccatgcactggctttgtggaaggtatggctccggtcttttcaagatctgcctggcattgcacttggcatcttatacagaatgatcttgtacatggatggggtctggacatgaagcttgggtattgtgcacagggggaccgtacaaagaatgttggagttgttgatagtgaatttatttttcataagggtatacaaagtttgggagggggtgactcacccgaaaaaaaggtttccaattctaagaagaaacgtattgtttcaaatcacgatggaagaaccgagattcggaggcaatcaacgcgggagtttacaatgttcaaagaacggtggaatcgtgctgtagaagaggacaagaagtggattgatccattcagaactgaccaaagacggaggaagaaacagcggttacgcaacaaccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

263

Amino Acids

30.96

Weight (kDa)

10.08

Isoelectric Point (pI)

57.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240
fragaria_vesca	FvH4_3g04460 FvH4_3g04460 FvH4_3g04460 FvH4_3g04460 FvH4_3g04460
malus_domestica	MD05G1323000.v1.1 MD10G1300800.v1.1
prunus_persica	Prupe.4G039600_v2.0.a1 Prupe.4G039600_v2.0.a1
pyrus_communis	pycom05g29730 pycom10g25370
rosa_chinensis	RchiOBHm_Chr3g0480871 RchiOBHm_Chr5g0006851
rosa_laevigata	RLG00000031434
rosa_multiflora	Rmu_sc0001044.1_g000034 Rmu_sc0002784.1_g000052 Rmu_sc0005956.1_g000005 Rmu_sc0012775.1_g000005
rosa_roxburghii	Rroxscaffold_1G00069200
rosa_rugosa	Rorug01G0182100 Rorug04G0425000 Rorug04G0425100.1
rosa_samantha	Rh5AG052700 Rh5AG052800 Rh5AG071100 Rh5AG371700 Rh5AG433400 Rh5BG051700 Rh5CG060300 Rh5DG050900
rosa_wichuraiana	Rw4G022980 Rw5G005190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	1 cut(s)	79
AccB7I	CCANNNNNTGG	1 cut(s)	377
AccI	GTMKAC	1 cut(s)	559
AccII	CGCG	1 cut(s)	670
AciI	CCGC	3 cut(s)	69, 670, 772
AclWI	GGATC	1 cut(s)	728
AcsI	RAATTY	2 cut(s)	214, 539
AfaI	GTAC	5 cut(s)	115, 262, 349, 459, 511
AfiI	CCNNNNNNNGG	3 cut(s)	160, 377, 654
AgsI	TTSAA	4 cut(s)	34, 411, 630, 688
AjnI	CCWGG	1 cut(s)	419
AluBI	AGCT	2 cut(s)	48, 484
AluI	AGCT	2 cut(s)	48, 484
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	1 cut(s)	167
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	728
ApaLI	GTGCAC	1 cut(s)	495
ApoI	RAATTY	2 cut(s)	214, 539
Asp700I	GAANNNNTTC	1 cut(s)	47
AspS9I	GGNCC	2 cut(s)	365, 505
AsuHPI	GGTGA	2 cut(s)	576, 590
AvaII	GGWCC	2 cut(s)	365, 505
BaeGI	GKGCMC	1 cut(s)	499
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	499
BccI	CCATC	4 cut(s)	50, 175, 459, 632
BciT130I	CCWGG	1 cut(s)	421
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	1 cut(s)	267
BfmI	CTRYAG	1 cut(s)	708
BfuAI	ACCTGC	1 cut(s)	79
BglII	AGATCT	1 cut(s)	413
Bme1390I	CCNGG	1 cut(s)	421
Bme18I	GGWCC	2 cut(s)	365, 505
BmgT120I	GGNCC	2 cut(s)	365, 505
BmiI	GGNNCC	2 cut(s)	399, 506
BmrFI	CCNGG	1 cut(s)	421
BmsI	GCATC	2 cut(s)	205, 445
BpiI	GAAGAC	1 cut(s)	11
BsaWI	WCCGGW	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 377, 654
Bse1I	ACTGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	421
BseGI	GGATG	2 cut(s)	196, 470
BseLI	CCNNNNNNNGG	3 cut(s)	160, 377, 654
BseMI	GCAATG	1 cut(s)	424
BseNI	ACTGG	1 cut(s)	382
BseSI	GKGCMC	1 cut(s)	499
Bsh1236I	CGCG	1 cut(s)	670
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	401
BslFI	GGGAC	1 cut(s)	518
BslI	CCNNNNNNNGG	3 cut(s)	160, 377, 654
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	518
BsmI	GAATGC	1 cut(s)	198
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp1407I	TGTACA	2 cut(s)	113, 457
Bsp143I	GATC	3 cut(s)	413, 451, 733
BspACI	CCGC	3 cut(s)	69, 670, 772
BspFNI	CGCG	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	399, 506
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	728
BsrDI	GCAATG	1 cut(s)	424
BsrGI	TGTACA	2 cut(s)	113, 457
BsrI	ACTGG	1 cut(s)	382
BssMI	GATC	3 cut(s)	413, 451, 733
BssNAI	GTATAC	1 cut(s)	560
Bst1107I	GTATAC	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	421
Bst4CI	ACNGT	5 cut(s)	118, 243, 286, 509, 696
Bst6I	CTCTTC	2 cut(s)	310, 708
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstAUI	TGTACA	2 cut(s)	113, 457
BstDEI	CTNAG	1 cut(s)	609
BstF5I	GGATG	2 cut(s)	196, 470
BstFNI	CGCG	1 cut(s)	670
BstKTI	GATC	3 cut(s)	416, 454, 736
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	3 cut(s)	413, 451, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	245, 667
BstNI	CCWGG	1 cut(s)	421
BstSCI	CCNGG	1 cut(s)	419
BstSFI	CTRYAG	1 cut(s)	708
BstSLI	GKGCMC	1 cut(s)	499
BstUI	CGCG	1 cut(s)	670
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	413
BstXI	CCANNNNNNTGG	1 cut(s)	18
BstYI	RGATCY	1 cut(s)	413
BstZ17I	GTATAC	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	196, 470
BtsI	GCAGTG	1 cut(s)	343
BtsIMutI	CAGTG	2 cut(s)	343, 375
BveI	ACCTGC	1 cut(s)	79
Cfr13I	GGNCC	2 cut(s)	365, 505
Csp6I	GTAC	5 cut(s)	114, 261, 348, 458, 510
CviAII	CATG	3 cut(s)	372, 461, 478
CviJI	RGCY	5 cut(s)	48, 164, 381, 398, 484
CviKI_1	RGCY	5 cut(s)	48, 164, 381, 398, 484
CviQI	GTAC	5 cut(s)	114, 261, 348, 458, 510
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	3 cut(s)	415, 453, 735
DpnII	GATC	3 cut(s)	413, 451, 733
Eam1104I	CTCTTC	2 cut(s)	310, 708
EarI	CTCTTC	2 cut(s)	310, 708
Eco47I	GGWCC	2 cut(s)	365, 505
EcoRII	CCWGG	1 cut(s)	419
EcoT22I	ATGCAT	1 cut(s)	198
FaeI	CATG	3 cut(s)	375, 464, 481
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	518
FatI	CATG	3 cut(s)	371, 460, 477
FauI	CCCGC	1 cut(s)	663
FblI	GTMKAC	1 cut(s)	559
FokI	GGATG	2 cut(s)	183, 477
FspBI	CTAG	1 cut(s)	267
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	3 cut(s)	375, 464, 481
HindIII	AAGCTT	1 cut(s)	482
HinfI	GANTC	3 cut(s)	581, 652, 700
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	576, 590
Hpy166II	GTNNAC	5 cut(s)	114, 348, 497, 560, 678
Hpy188I	TCNGA	4 cut(s)	55, 274, 657, 743
Hpy188III	TCNNGA	6 cut(s)	34, 209, 229, 411, 473, 635
Hpy8I	GTNNAC	5 cut(s)	114, 348, 497, 560, 678
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	5 cut(s)	118, 243, 286, 509, 696
HpyCH4IV	ACGT	1 cut(s)	619
HpyCH4V	TGCA	5 cut(s)	196, 239, 375, 429, 497
HpyF10VI	GCNNNNNNNGC	2 cut(s)	245, 667
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	619
Hsp92II	CATG	3 cut(s)	375, 464, 481
Kzo9I	GATC	3 cut(s)	413, 451, 733
LmnI	GCTCC	1 cut(s)	403
LweI	GCATC	2 cut(s)	205, 445
MaeI	CTAG	1 cut(s)	267
MaeII	ACGT	1 cut(s)	619
MaeIII	GTNAC	2 cut(s)	578, 774
MalI	GATC	3 cut(s)	415, 453, 735
MboI	GATC	3 cut(s)	413, 451, 733
MboII	GAAGA	9 cut(s)	16, 49, 52, 197, 327, 625, 654, 725, 775
MflI	RGATCY	1 cut(s)	413
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	5 cut(s)	148, 214, 279, 539, 604
MlyI	GAGTC	1 cut(s)	575
MmeI	TCCRAC	2 cut(s)	252, 502
MnlI	CCTC	9 cut(s)	25, 65, 326, 346, 356, 566, 651, 709, 753
Mph1103I	ATGCAT	1 cut(s)	198
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	2 cut(s)	77, 204
MspA1I	CMGCKG	1 cut(s)	772
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	421
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	421
MvnI	CGCG	1 cut(s)	670
MwoI	GCNNNNNNNGC	2 cut(s)	245, 667
NdeII	GATC	3 cut(s)	413, 451, 733
NlaIII	CATG	3 cut(s)	375, 464, 481
NlaIV	GGNNCC	2 cut(s)	399, 506
NmuCI	GTSAC	1 cut(s)	578
NsiI	ATGCAT	1 cut(s)	198
PaqCI	CACCTGC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	700
PctI	GAATGC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	652, 700
PflMI	CCANNNNNTGG	1 cut(s)	377
PleI	GAGTC	1 cut(s)	575
PpsI	GAGTC	1 cut(s)	575
PsiI	TTATAA	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	419
PspGI	CCWGG	1 cut(s)	419
PspN4I	GGNNCC	2 cut(s)	399, 506
PspPI	GGNCC	2 cut(s)	365, 505
PsuI	RGATCY	1 cut(s)	413
RsaI	GTAC	5 cut(s)	115, 262, 349, 459, 511
RsaNI	GTAC	5 cut(s)	114, 261, 348, 458, 510
SaqAI	TTAA	2 cut(s)	77, 204
Sau3AI	GATC	3 cut(s)	413, 451, 733
Sau96I	GGNCC	2 cut(s)	365, 505
SchI	GAGTC	1 cut(s)	575
ScrFI	CCNGG	1 cut(s)	421
SduI	GDGCHC	1 cut(s)	499
SetI	ASST	8 cut(s)	17, 50, 93, 272, 394, 486, 600, 622
SfaNI	GCATC	2 cut(s)	205, 445
SfcI	CTRYAG	1 cut(s)	708
SinI	GGWCC	2 cut(s)	365, 505
Sse9I	AATT	5 cut(s)	148, 214, 279, 539, 604
SsiI	CCGC	3 cut(s)	69, 670, 772
SspMI	CTAG	1 cut(s)	267
StyD4I	CCNGG	1 cut(s)	419
TaaI	ACNGT	5 cut(s)	118, 243, 286, 509, 696
TaiI	ACGT	1 cut(s)	622
TaqI	TCGA	1 cut(s)	361
TasI	AATT	5 cut(s)	148, 214, 279, 539, 604
TatI	WGTACW	3 cut(s)	113, 260, 457
TfiI	GAWTC	2 cut(s)	652, 700
Tru1I	TTAA	2 cut(s)	77, 204
Tru9I	TTAA	2 cut(s)	77, 204
TscAI	CASTG	2 cut(s)	343, 382
TseFI	GTSAC	1 cut(s)	578
Tsp45I	GTSAC	1 cut(s)	578
TspDTI	ATGAA	5 cut(s)	17, 98, 118, 494, 539
TspGWI	ACGGA	2 cut(s)	365, 772
TspRI	CASTG	2 cut(s)	343, 382
Van91I	CCANNNNNTGG	1 cut(s)	377
VneI	GTGCAC	1 cut(s)	495
VpaK11BI	GGWCC	2 cut(s)	365, 505
XapI	RAATTY	2 cut(s)	214, 539
XmiI	GTMKAC	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	1 cut(s)	267
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.