Rh5AG433400

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001643
Physical Location & Seq
Reverse (-)
74538160 .. 74540752
2593 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG433400.1

Sequence Viewer

Length: 573 bp
ATGATTAGAATTTTGGCTTCTACGTTTTATGGCTTGAATGGGTGCAATAACTTTGAGAAAGTTCAAAGCCTATTGAAAACCTTTGTGTGCAATGGATGTTGCAGACAGATAAACGGATTCAGATTTGTGTTGTTGCTTGTTATAGCATTGCTGAATTGGATGGAAGAAAGAATGCATCCCTTTAATCAGATGTTGGATGTATCTGGTATTAAGCAGAAACATAGTGTTGATGATATTGTGCAAAAGTTTCTTCCAGAAAACTTTACGATTATACTATTCCATTATGATGGGAATGTTAAAGGGTGGTGGGATCTTGAGTGGAGTAACCAGGCCATACACATAGTTGCCCACAACCAAACAAAGTGGTGGTTTGCAAAACGATTTCTACATCCAGATGTTGTGTCCATTTATGATTACATATTCCTTTGGGATGAAGATTTGGGGGTTGAGGATTTTAAAGATTATGTTCCAACTGTATTTGACAACTTCAGTGCTAATGTTTTGGTTGATGGGCAGACTGTGAATCTGGGTCTCTGGGATACTGCTGGTACTATTTCTTTCTACCTCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

190

Amino Acids

22.2

Weight (kDa)

5.22

Isoelectric Point (pI)

31.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 67 - 153 9.2e-45 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 318
AcsI RAATTY 1 cut(s) 9
AcuI CTGAAG 1 cut(s) 472
AfaI GTAC 1 cut(s) 550
AgsI TTSAA 3 cut(s) 37, 65, 76
AjnI CCWGG 1 cut(s) 327
Alw26I GTCTC 1 cut(s) 536
AlwI GGATC 1 cut(s) 318
AoxI GGCC 1 cut(s) 330
ApoI RAATTY 1 cut(s) 9
BccI CCATC 3 cut(s) 154, 281, 503
BciT130I CCWGG 1 cut(s) 329
BciVI GTATCC 1 cut(s) 532
BcoDI GTCTC 1 cut(s) 536
BfuI GTATCC 1 cut(s) 532
Bme1390I CCNGG 1 cut(s) 329
BmrFI CCNGG 1 cut(s) 329
BmsI GCATC 1 cut(s) 184
BpuEI CTTGAG 1 cut(s) 335
BsaI GGTCTC 1 cut(s) 536
Bse3DI GCAATG 2 cut(s) 97, 146
BseBI CCWGG 1 cut(s) 329
BseGI GGATG 6 cut(s) 101, 165, 175, 202, 388, 436
BseMI GCAATG 2 cut(s) 97, 146
BshFI GGCC 1 cut(s) 332
BsmAI GTCTC 1 cut(s) 536
BsmI GAATGC 1 cut(s) 177
BsnI GGCC 1 cut(s) 332
Bso31I GGTCTC 1 cut(s) 536
Bsp143I GATC 1 cut(s) 310
BspANI GGCC 1 cut(s) 332
BspPI GGATC 1 cut(s) 318
BspTNI GGTCTC 1 cut(s) 536
BsrDI GCAATG 2 cut(s) 97, 146
BssMI GATC 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 329
Bst4CI ACNGT 2 cut(s) 475, 520
BstDEI CTNAG 1 cut(s) 570
BstF5I GGATG 6 cut(s) 101, 165, 175, 202, 388, 436
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 1 cut(s) 536
BstMBI GATC 1 cut(s) 310
BstNI CCWGG 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 327
BstX2I RGATCY 1 cut(s) 310
BstXI CCANNNNNNTGG 1 cut(s) 287
BstYI RGATCY 1 cut(s) 310
BsuI GTATCC 1 cut(s) 532
BsuRI GGCC 1 cut(s) 332
BtsCI GGATG 6 cut(s) 101, 165, 175, 202, 388, 436
BtsIMutI CAGTG 1 cut(s) 496
Csp6I GTAC 1 cut(s) 549
CspCI CAANNNNNGTGG 2 cut(s) 344, 379
CviJI RGCY 4 cut(s) 17, 33, 69, 332
CviKI_1 RGCY 4 cut(s) 17, 33, 69, 332
CviQI GTAC 1 cut(s) 549
DdeI CTNAG 1 cut(s) 570
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
DraI TTTAAA 1 cut(s) 457
Eco31I GGTCTC 1 cut(s) 536
Eco57I CTGAAG 1 cut(s) 472
EcoRII CCWGG 1 cut(s) 327
EcoT22I ATGCAT 1 cut(s) 177
FokI GGATG 6 cut(s) 108, 162, 172, 209, 375, 443
HaeIII GGCC 1 cut(s) 332
HinfI GANTC 2 cut(s) 117, 523
Hpy188I TCNGA 2 cut(s) 122, 189
Hpy188III TCNNGA 3 cut(s) 254, 314, 392
HpyCH4III ACNGT 2 cut(s) 475, 520
HpyCH4IV ACGT 1 cut(s) 23
HpyCH4V TGCA 6 cut(s) 45, 90, 102, 175, 241, 374
HpyF3I CTNAG 1 cut(s) 570
HpySE526I ACGT 1 cut(s) 23
Kzo9I GATC 1 cut(s) 310
LpnPI CCDG 8 cut(s) 189, 267, 314, 341, 405, 512, 520, 531
LweI GCATC 1 cut(s) 184
MaeII ACGT 1 cut(s) 23
MaeIII GTNAC 1 cut(s) 323
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 3 cut(s) 176, 242, 446
MflI RGATCY 1 cut(s) 310
MluCI AATT 2 cut(s) 9, 154
MmeI TCCRAC 2 cut(s) 174, 494
MnlI CCTC 1 cut(s) 442
Mph1103I ATGCAT 1 cut(s) 177
MseI TTAA 4 cut(s) 183, 210, 297, 456
MslI CAYNNNNRTG 2 cut(s) 285, 393
MspR9I CCNGG 1 cut(s) 329
Mva1269I GAATGC 1 cut(s) 177
MvaI CCWGG 1 cut(s) 329
NdeII GATC 1 cut(s) 310
NsiI ATGCAT 1 cut(s) 177
PctI GAATGC 1 cut(s) 177
PfeI GAWTC 2 cut(s) 117, 523
Psp6I CCWGG 1 cut(s) 327
PspGI CCWGG 1 cut(s) 327
PsuI RGATCY 1 cut(s) 310
RsaI GTAC 1 cut(s) 550
RsaNI GTAC 1 cut(s) 549
RseI CAYNNNNRTG 2 cut(s) 285, 393
SaqAI TTAA 4 cut(s) 183, 210, 297, 456
Sau3AI GATC 1 cut(s) 310
ScrFI CCNGG 1 cut(s) 329
SetI ASST 3 cut(s) 26, 83, 567
SfaNI GCATC 1 cut(s) 184
SmiMI CAYNNNNRTG 2 cut(s) 285, 393
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 2 cut(s) 9, 154
StyD4I CCNGG 1 cut(s) 327
TaaI ACNGT 2 cut(s) 475, 520
TaiI ACGT 1 cut(s) 26
TasI AATT 2 cut(s) 9, 154
TfiI GAWTC 2 cut(s) 117, 523
Tru1I TTAA 4 cut(s) 183, 210, 297, 456
Tru9I TTAA 4 cut(s) 183, 210, 297, 456
TscAI CASTG 1 cut(s) 496
TspDTI ATGAA 1 cut(s) 447
TspGWI ACGGA 1 cut(s) 129
TspRI CASTG 1 cut(s) 496
XapI RAATTY 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.