Rh5AG071100

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001643
Physical Location & Seq
Forward (+)
6057170 .. 6060807
3638 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG071100.1

Sequence Viewer

Length: 459 bp
ATGGAAAGAAAACCATTGATTCCTGAATCCATGCCTCTTAAGACTTACCGGAATCCCAAGAAGAGGGACAGCGACGAGGTCGAGATCAAGATCGGTACGGCGCCGTTTTGGCATAGCAATCACAATTTACTGGCTATTGCAGCTGATATTAAGCAGAAAGATAGTGTTGATGATATTGTGCAAAAGTTTCTTCCAGAAAACTTTACAATTATGCTATTCCATTATGATGGGAATATTAAAGGGTGGTGGGATCTTGAGTGGAGTAATCAGGCCATAGACATAGTTGCCCACAACCAAACAAAGTGGTGGTTTGCAAAACGATTTCTACATCCAGATGTTGTGTCCATTTATGATTACATATTCCTTTGGGATGAAGATTTGGGGGTTGAGGATTTTAACCCAGCAAGAGAGTTAGTTGAATACATGCTGGAATATCCAAAGAAAATGTTACGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

152

Amino Acids

18.19

Weight (kDa)

5.34

Isoelectric Point (pI)

46.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 39 - 137 3.9e-48 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 100
AclWI GGATC 1 cut(s) 258
AcyI GRCGYC 1 cut(s) 101
AfaI GTAC 1 cut(s) 97
AfiI CCNNNNNNNGG 1 cut(s) 63
AflII CTTAAG 1 cut(s) 38
AgsI TTSAA 1 cut(s) 419
AluBI AGCT 1 cut(s) 143
AluI AGCT 1 cut(s) 143
AlwI GGATC 1 cut(s) 258
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 1 cut(s) 140
AspLEI GCGC 1 cut(s) 103
BanI GGYRCC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 221
BceAI ACGGC 2 cut(s) 88, 114
BfoI RGCGCY 1 cut(s) 104
BfrI CTTAAG 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 109
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmiI GGNNCC 1 cut(s) 102
BpuEI CTTGAG 1 cut(s) 275
BsaBI GATNNNNATC 1 cut(s) 89
BsaHI GRCGYC 1 cut(s) 101
BsaWI WCCGGW 1 cut(s) 48
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 135
Bse8I GATNNNNATC 1 cut(s) 89
BseGI GGATG 2 cut(s) 328, 376
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 135
BseXI GCAGC 1 cut(s) 152
BseYI CCCAGC 1 cut(s) 400
BshFI GGCC 1 cut(s) 272
BshNI GGYRCC 1 cut(s) 100
BsiSI CCGG 1 cut(s) 49
BslFI GGGAC 1 cut(s) 80
BslI CCNNNNNNNGG 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 80
BsnI GGCC 1 cut(s) 272
Bsp143I GATC 4 cut(s) 84, 90, 250, 452
BspANI GGCC 1 cut(s) 272
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 258
BspT107I GGYRCC 1 cut(s) 100
BspTI CTTAAG 1 cut(s) 38
BsrI ACTGG 1 cut(s) 135
BssMI GATC 4 cut(s) 84, 90, 250, 452
BssNI GRCGYC 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 56
BstACI GRCGYC 1 cut(s) 101
BstAFI CTTAAG 1 cut(s) 38
BstF5I GGATG 2 cut(s) 328, 376
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 4 cut(s) 87, 93, 253, 455
BstMBI GATC 4 cut(s) 84, 90, 250, 452
BstMWI GCNNNNNNNGC 2 cut(s) 109, 140
BstNSI RCATGY 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 250
BstXI CCANNNNNNTGG 1 cut(s) 227
BstYI RGATCY 1 cut(s) 250
BsuRI GGCC 1 cut(s) 272
BtsCI GGATG 2 cut(s) 328, 376
CfoI GCGC 1 cut(s) 103
Csp6I GTAC 1 cut(s) 96
CspCI CAANNNNNGTGG 2 cut(s) 284, 319
CviAII CATG 2 cut(s) 31, 424
CviJI RGCY 3 cut(s) 134, 143, 272
CviKI_1 RGCY 3 cut(s) 134, 143, 272
CviQI GTAC 1 cut(s) 96
DinI GGCGCC 1 cut(s) 102
DpnI GATC 4 cut(s) 86, 92, 252, 454
DpnII GATC 4 cut(s) 84, 90, 250, 452
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
EgeI GGCGCC 1 cut(s) 102
EheI GGCGCC 1 cut(s) 102
FaeI CATG 2 cut(s) 34, 427
FaiI YATR 9 cut(s) 32, 114, 212, 225, 275, 281, 351, 359, 425
FaqI GGGAC 1 cut(s) 80
FatI CATG 2 cut(s) 30, 423
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 2 cut(s) 315, 383
Fsp4HI GCNGC 1 cut(s) 141
GlaI GCGC 1 cut(s) 102
GluI GCNGC 1 cut(s) 141
GsaI CCCAGC 1 cut(s) 404
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 1 cut(s) 272
HapII CCGG 1 cut(s) 49
HhaI GCGC 1 cut(s) 103
Hin1I GRCGYC 1 cut(s) 101
Hin1II CATG 2 cut(s) 34, 427
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HinfI GANTC 3 cut(s) 19, 26, 52
HpaII CCGG 1 cut(s) 49
Hpy188III TCNNGA 7 cut(s) 23, 82, 88, 194, 254, 332, 456
Hpy99I CGWCG 1 cut(s) 77
HpyCH4V TGCA 3 cut(s) 140, 181, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 109, 140
Hsp92I GRCGYC 1 cut(s) 101
Hsp92II CATG 2 cut(s) 34, 427
HspAI GCGC 1 cut(s) 101
KasI GGCGCC 1 cut(s) 100
Kzo9I GATC 4 cut(s) 84, 90, 250, 452
LpnPI CCDG 8 cut(s) 36, 62, 116, 207, 254, 345, 413, 414
Lsp1109I GCAGC 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 447
MalI GATC 4 cut(s) 86, 92, 252, 454
MboI GATC 4 cut(s) 84, 90, 250, 452
MboII GAAGA 3 cut(s) 73, 182, 386
MflI RGATCY 1 cut(s) 250
MluCI AATT 2 cut(s) 124, 207
Mly113I GGCGCC 1 cut(s) 101
MnlI CCTC 4 cut(s) 45, 57, 70, 382
MseI TTAA 4 cut(s) 39, 150, 237, 396
MslI CAYNNNNRTG 2 cut(s) 225, 333
MspA1I CMGCKG 1 cut(s) 143
MspCI CTTAAG 1 cut(s) 38
MspI CCGG 1 cut(s) 49
MwoI GCNNNNNNNGC 2 cut(s) 109, 140
NarI GGCGCC 1 cut(s) 101
NdeII GATC 4 cut(s) 84, 90, 250, 452
NlaIII CATG 2 cut(s) 34, 427
NlaIV GGNNCC 1 cut(s) 102
NspI RCATGY 1 cut(s) 427
PfeI GAWTC 3 cut(s) 19, 26, 52
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 1 cut(s) 142
PluTI GGCGCC 1 cut(s) 104
PspFI CCCAGC 1 cut(s) 400
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 250
PsyI GACNNNGTC 1 cut(s) 77
PvuII CAGCTG 1 cut(s) 143
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 2 cut(s) 225, 333
SaqAI TTAA 4 cut(s) 39, 150, 237, 396
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 4 cut(s) 84, 90, 250, 452
SetI ASST 2 cut(s) 81, 145
SfoI GGCGCC 1 cut(s) 102
SmiMI CAYNNNNRTG 2 cut(s) 225, 333
SmlI CTYRAG 2 cut(s) 38, 254
SmoI CTYRAG 2 cut(s) 38, 254
Sse9I AATT 2 cut(s) 124, 207
SspDI GGCGCC 1 cut(s) 100
SspI AATATT 1 cut(s) 235
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 124, 207
TfiI GAWTC 3 cut(s) 19, 26, 52
Tru1I TTAA 4 cut(s) 39, 150, 237, 396
Tru9I TTAA 4 cut(s) 39, 150, 237, 396
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 387
Tth111I GACNNNGTC 1 cut(s) 77
Vha464I CTTAAG 1 cut(s) 38
XceI RCATGY 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.