Rh5CG060300

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0001643
Physical Location & Seq
Reverse (-)
4444775 .. 4455395
10621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG060300.1

Sequence Viewer

Length: 810 bp
ATGGCTGAGACCTATTGCTGGCCTTGTAAGGTTCACATGGCTGCTGCTGCTTACGCTTCTTTATATCATGCTCATGTGTTGATCATACTGGGGAAGAGTTTCTGGATCACAAGGTGGTTTGCAAAACGATTTCTACATCCAGATGTTGTGTCCATTTATGATTACATATTCCTTTGGGATGAAGATTTGGGGGTTGAGGATTTTAACCCAGCAAGGTACCTTGAAATTGTAAGAGAAGCAGGACTGGAGATATCTCAGCCAGCTTTGCATCCAAATTCATCTGATATACATCATAGAATTACAGTTCGTGCTAAAAAAAAGAAGTTCCATAGAAGAGTTTATGATAGTAGAGGCAGTGTGAAGTGTACGGAGGAAAGTCGAGGACCACCATGCACTGGGTTTGTGGAAGGTATGGCTCCGGTCTTTTCAAGATCTGCCTGGCATTGCACTTGGCATCTTATACAGAATGATCTTGTACATGGATGGGGTCTGGACATGAAGCTTGGGTATTGTGCACAGGGGGACCGTACAAAGAATGTTGGAGTTGTTGATAGTGAATTTATTTTTCATAAGGGTATACAAAGTTTGGGAGGGGGTGACTCACCCGAAAAAAAGGTTTCCAATTCTAAGAAGAAACGTATTGTTTCAAATCACGATGGAAGAACCGAGATTCGGAGGCAATCAACGCGGGAGTTTACAATGTTCAAAGAACGGTGGAATCGTGCTGTAGAAGAGGACAAGAAGTGGATTGATCCATTCAGAACTGACCAAAGAAGGAGAAAGAAACAGCGGTTACGCAACAACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

269

Amino Acids

31.47

Weight (kDa)

9.59

Isoelectric Point (pI)

61.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 39 - 244 4.6e-94 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 216
AccB7I CCANNNNNTGG 1 cut(s) 395
AccI GTMKAC 1 cut(s) 577
AccII CGCG 1 cut(s) 688
AciI CCGC 2 cut(s) 688, 790
AclWI GGATC 2 cut(s) 113, 746
AcsI RAATTY 2 cut(s) 274, 557
AdeI CACNNNGTG 1 cut(s) 114
AfaI GTAC 4 cut(s) 218, 367, 477, 529
AfiI CCNNNNNNNGG 3 cut(s) 18, 395, 672
AgsI TTSAA 4 cut(s) 224, 429, 648, 706
AjnI CCWGG 1 cut(s) 437
AluBI AGCT 2 cut(s) 263, 502
AluI AGCT 2 cut(s) 263, 502
Alw21I GWGCWC 1 cut(s) 517
Alw26I GTCTC 1 cut(s) 2
Alw44I GTGCAC 1 cut(s) 513
AlwI GGATC 2 cut(s) 113, 746
AoxI GGCC 1 cut(s) 20
ApaLI GTGCAC 1 cut(s) 513
ApeKI GCWGC 3 cut(s) 41, 44, 47
ApoI RAATTY 2 cut(s) 274, 557
Asp700I GAANNNNTTC 1 cut(s) 98
Asp718I GGTACC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 383, 523
AsuHPI GGTGA 2 cut(s) 594, 608
AvaII GGWCC 2 cut(s) 383, 523
BaeGI GKGCMC 1 cut(s) 517
BanI GGYRCC 1 cut(s) 216
Bbv12I GWGCWC 1 cut(s) 517
BbvI GCAGC 3 cut(s) 28, 31, 34
BccI CCATC 2 cut(s) 477, 650
BciT130I CCWGG 1 cut(s) 439
BclI TGATCA 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 2
BfmI CTRYAG 1 cut(s) 726
BglII AGATCT 1 cut(s) 431
BisI GCNGC 3 cut(s) 42, 45, 48
BlsI GCNGC 3 cut(s) 43, 46, 49
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 2 cut(s) 383, 523
BmgT120I GGNCC 2 cut(s) 383, 523
BmiI GGNNCC 3 cut(s) 218, 417, 524
BmrFI CCNGG 1 cut(s) 439
BmrI ACTGGG 2 cut(s) 98, 405
BmsI GCATC 2 cut(s) 277, 463
BmuI ACTGGG 2 cut(s) 98, 405
BpmI CTGGAG 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 2
BsaWI WCCGGW 1 cut(s) 418
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 395, 672
Bse1I ACTGG 3 cut(s) 93, 249, 400
Bse3DI GCAATG 1 cut(s) 442
Bse8I GATNNNNATC 1 cut(s) 288
BseBI CCWGG 1 cut(s) 439
BseGI GGATG 4 cut(s) 136, 184, 268, 488
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 3 cut(s) 18, 395, 672
BseMI GCAATG 1 cut(s) 442
BseMII CTCAG 1 cut(s) 269
BseNI ACTGG 3 cut(s) 93, 249, 400
BseSI GKGCMC 1 cut(s) 517
BseXI GCAGC 3 cut(s) 28, 31, 34
BseYI CCCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 688
BshFI GGCC 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 216
BsiHKAI GWGCWC 1 cut(s) 517
BsiSI CCGG 1 cut(s) 419
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 3 cut(s) 18, 395, 672
BsmAI GTCTC 1 cut(s) 2
BsmFI GGGAC 1 cut(s) 536
BsnI GGCC 1 cut(s) 22
Bso31I GGTCTC 1 cut(s) 2
Bsp1286I GDGCHC 1 cut(s) 517
Bsp1407I TGTACA 1 cut(s) 475
Bsp143I GATC 5 cut(s) 81, 105, 431, 469, 751
BspACI CCGC 2 cut(s) 688, 790
BspANI GGCC 1 cut(s) 22
BspCNI CTCAG 1 cut(s) 268
BspFNI CGCG 1 cut(s) 688
BspLI GGNNCC 3 cut(s) 218, 417, 524
BspPI GGATC 2 cut(s) 113, 746
BspT107I GGYRCC 1 cut(s) 216
BspTNI GGTCTC 1 cut(s) 2
BsrDI GCAATG 1 cut(s) 442
BsrGI TGTACA 1 cut(s) 475
BsrI ACTGG 3 cut(s) 93, 249, 400
BssMI GATC 5 cut(s) 81, 105, 431, 469, 751
BssNAI GTATAC 1 cut(s) 578
Bst1107I GTATAC 1 cut(s) 578
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 3 cut(s) 304, 527, 714
Bst6I CTCTTC 3 cut(s) 89, 328, 726
BstAUI TGTACA 1 cut(s) 475
BstC8I GCNNGC 2 cut(s) 20, 261
BstDEI CTNAG 3 cut(s) 6, 255, 627
BstF5I GGATG 4 cut(s) 136, 184, 268, 488
BstFNI CGCG 1 cut(s) 688
BstKTI GATC 5 cut(s) 84, 108, 434, 472, 754
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 5 cut(s) 81, 105, 431, 469, 751
BstMWI GCNNNNNNNGC 4 cut(s) 47, 53, 265, 685
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 1 cut(s) 726
BstSLI GKGCMC 1 cut(s) 517
BstUI CGCG 1 cut(s) 688
BstV1I GCAGC 3 cut(s) 28, 31, 34
BstX2I RGATCY 1 cut(s) 431
BstYI RGATCY 1 cut(s) 431
BstZ17I GTATAC 1 cut(s) 578
BsuRI GGCC 1 cut(s) 22
BtsCI GGATG 4 cut(s) 136, 184, 268, 488
BtsI GCAGTG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 361, 393
Cac8I GCNNGC 2 cut(s) 20, 261
Cfr13I GGNCC 2 cut(s) 383, 523
Csp6I GTAC 4 cut(s) 217, 366, 476, 528
CviAII CATG 6 cut(s) 37, 68, 74, 390, 479, 496
CviJI RGCY 7 cut(s) 5, 22, 41, 259, 263, 416, 502
CviKI_1 RGCY 7 cut(s) 5, 22, 41, 259, 263, 416, 502
CviQI GTAC 4 cut(s) 217, 366, 476, 528
DdeI CTNAG 3 cut(s) 6, 255, 627
DpnI GATC 5 cut(s) 83, 107, 433, 471, 753
DpnII GATC 5 cut(s) 81, 105, 431, 469, 751
DraIII CACNNNGTG 1 cut(s) 114
Eam1104I CTCTTC 3 cut(s) 89, 328, 726
EarI CTCTTC 3 cut(s) 89, 328, 726
Eco31I GGTCTC 1 cut(s) 2
Eco32I GATATC 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 383, 523
EcoRII CCWGG 1 cut(s) 437
EcoRV GATATC 1 cut(s) 252
FaeI CATG 6 cut(s) 40, 71, 77, 393, 482, 499
FaqI GGGAC 1 cut(s) 536
FatI CATG 6 cut(s) 36, 67, 73, 389, 478, 495
FauI CCCGC 1 cut(s) 681
FbaI TGATCA 1 cut(s) 81
FblI GTMKAC 1 cut(s) 577
Fnu4HI GCNGC 3 cut(s) 42, 45, 48
FokI GGATG 4 cut(s) 123, 191, 255, 495
Fsp4HI GCNGC 3 cut(s) 42, 45, 48
GluI GCNGC 3 cut(s) 42, 45, 48
GsaI CCCAGC 1 cut(s) 212
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 419
Hin1II CATG 6 cut(s) 40, 71, 77, 393, 482, 499
HindIII AAGCTT 1 cut(s) 500
HinfI GANTC 3 cut(s) 599, 670, 718
HpaII CCGG 1 cut(s) 419
HphI GGTGA 2 cut(s) 594, 608
Hpy166II GTNNAC 5 cut(s) 34, 366, 515, 578, 696
Hpy188I TCNGA 3 cut(s) 283, 675, 761
Hpy188III TCNNGA 5 cut(s) 103, 140, 429, 491, 653
Hpy8I GTNNAC 5 cut(s) 34, 366, 515, 578, 696
HpyAV CCTTC 2 cut(s) 401, 768
HpyCH4III ACNGT 3 cut(s) 304, 527, 714
HpyCH4IV ACGT 1 cut(s) 637
HpyCH4V TGCA 5 cut(s) 122, 268, 393, 447, 515
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 53, 265, 685
HpyF3I CTNAG 3 cut(s) 6, 255, 627
HpySE526I ACGT 1 cut(s) 637
Hsp92II CATG 6 cut(s) 40, 71, 77, 393, 482, 499
KpnI GGTACC 1 cut(s) 220
Ksp22I TGATCA 1 cut(s) 81
Kzo9I GATC 5 cut(s) 81, 105, 431, 469, 751
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 3 cut(s) 28, 31, 34
LweI GCATC 2 cut(s) 277, 463
MaeII ACGT 1 cut(s) 637
MaeIII GTNAC 2 cut(s) 596, 792
MalI GATC 5 cut(s) 83, 107, 433, 471, 753
MboI GATC 5 cut(s) 81, 105, 431, 469, 751
MboII GAAGA 6 cut(s) 106, 194, 345, 643, 672, 743
MflI RGATCY 1 cut(s) 431
MhlI GDGCHC 1 cut(s) 517
MluCI AATT 5 cut(s) 225, 274, 297, 557, 622
MlyI GAGTC 1 cut(s) 593
MmeI TCCRAC 1 cut(s) 520
MnlI CCTC 7 cut(s) 190, 344, 364, 374, 584, 669, 727
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 1 cut(s) 204
MslI CAYNNNNRTG 2 cut(s) 72, 141
MspA1I CMGCKG 1 cut(s) 790
MspI CCGG 1 cut(s) 419
MspR9I CCNGG 1 cut(s) 439
MvaI CCWGG 1 cut(s) 439
MvnI CGCG 1 cut(s) 688
MwoI GCNNNNNNNGC 4 cut(s) 47, 53, 265, 685
NdeII GATC 5 cut(s) 81, 105, 431, 469, 751
NlaIII CATG 6 cut(s) 40, 71, 77, 393, 482, 499
NlaIV GGNNCC 3 cut(s) 218, 417, 524
NmuCI GTSAC 1 cut(s) 596
PcsI WCGNNNNNNNCGW 1 cut(s) 718
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 670, 718
PflMI CCANNNNNTGG 1 cut(s) 395
PkrI GCNGC 3 cut(s) 43, 46, 49
PleI GAGTC 1 cut(s) 593
PpsI GAGTC 1 cut(s) 593
Psp6I CCWGG 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 208
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 3 cut(s) 218, 417, 524
PspPI GGNCC 2 cut(s) 383, 523
PsuI RGATCY 1 cut(s) 431
RsaI GTAC 4 cut(s) 218, 367, 477, 529
RsaNI GTAC 4 cut(s) 217, 366, 476, 528
RseI CAYNNNNRTG 2 cut(s) 72, 141
SaqAI TTAA 1 cut(s) 204
SatI GCNGC 3 cut(s) 42, 45, 48
Sau3AI GATC 5 cut(s) 81, 105, 431, 469, 751
Sau96I GGNCC 2 cut(s) 383, 523
SchI GAGTC 1 cut(s) 593
ScrFI CCNGG 1 cut(s) 439
SduI GDGCHC 1 cut(s) 517
SfaNI GCATC 2 cut(s) 277, 463
SfcI CTRYAG 1 cut(s) 726
SinI GGWCC 2 cut(s) 383, 523
SmiMI CAYNNNNRTG 2 cut(s) 72, 141
Sse9I AATT 5 cut(s) 225, 274, 297, 557, 622
SsiI CCGC 2 cut(s) 688, 790
StyD4I CCNGG 1 cut(s) 437
TaaI ACNGT 3 cut(s) 304, 527, 714
TaiI ACGT 1 cut(s) 640
TaqI TCGA 1 cut(s) 379
TasI AATT 5 cut(s) 225, 274, 297, 557, 622
TatI WGTACW 1 cut(s) 475
TfiI GAWTC 2 cut(s) 670, 718
Tru1I TTAA 1 cut(s) 204
Tru9I TTAA 1 cut(s) 204
TscAI CASTG 2 cut(s) 361, 400
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 3 cut(s) 41, 44, 47
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 4 cut(s) 195, 267, 512, 557
TspGWI ACGGA 1 cut(s) 383
TspRI CASTG 2 cut(s) 361, 400
Van91I CCANNNNNTGG 1 cut(s) 395
VneI GTGCAC 1 cut(s) 513
VpaK11BI GGWCC 2 cut(s) 383, 523
XapI RAATTY 2 cut(s) 274, 557
XmiI GTMKAC 1 cut(s) 577
XmnI GAANNNNTTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.