Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0001643

Physical Location & Seq

Genomic Coordinates Forward (+)

27037303 .. 27041341

Gene Structure 4039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g25370.10

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGAAGTCACCAAACTCATGGATATGGATGCTCAAGAAAAAGAATTCTTTTTCTGATGGGGGGAAAGGCGGAATCAAGATGAAGCAGCTGTCATTTATGGGAGTTGCATGTACCGTAATGTTATTCATTGTGTATAGAACCACCAACTTTCAGTATCAAGCTTATCAGCAGACAGAGATTGACGCAAAGTGGAATCCCTTTGACACAGCAAAGGAAATTTTTGCGACTTCGAGAAAGTTGGACAGTTTACCTCGTGGGATTATACAGCCTAGGTCAGATTTAGAGCAAAGGCCTCTATGGTTGACAAGTAGTTCAAGGTTAAAGGTCGATGATTATAGCAACCGTAACTTGCTGGCTATTCCGGTTGGTATCAAGCAAAAGGATAGTGTTGATGCTATTGTGAGAAAGTTTCTTCCAGAAAATTTTACCTTTATCCTATTCCATTATGATGGGAATGTTGATGGGTGGTGGGATCTTGAGTGGAGTAACGAGGCCATACACATAGTTGCCCAGAACCAAACAAAGTGGTGGTTTGCGAAACGCTTTCTACATCCAGATATTGTGTCCATTTATGATTACGTATTCCTTTGGGATGAGGATTTGGGGGTTGAGAATTTTCATCCAGGAAGATACCTTGAAATTGTGAAAGAAGCGGGACTGGAGATATCTCAGCCAGCTTTGCATCCAAATTCAACAGATATACATCATAGAATTACAATTCGTGCTAAAAATAAGAAGTTTCATAGAAGAGTTTATGACACCAGAGGCAGCACAAAGTGTACAGAAGCAAGTCAGGGACCACCATGTACCGGGTTTGTGGAAGGCATGGCTCCCGTTTTTTCAAGAGCTGCCTGGCATTGTACTTGGCATCTTATACAGAATGATCTTGTACATGGATGGGGTCTGGACATGAGACTTGGGTATTGTGCACAGGGAGACCGTACCAAGAAAGTGGGAGTTGTTGATAGTGAATATATTGTTCACAAGGGAATACAAACTTTGGGAGAAGGTGGTTCGTCGACAAACAAGGTTCCTGAGAAGAAGAGTAAGAAACGAGCTGCGCCAGGGCATGACATGCGAATTGAGATTAGGAGGCAGTCAACGCGGGAGTTTATAACCTTCAAACAGCGGTGGAATAACGCAGTAGAAGAAGACCCGAACTGGGCTGATCCATTTAAAAGTAGTCTAAAACGCAGGAAACAGCGTAAACGCGACAACTTGAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

410

Amino Acids

47.4

Weight (kDa)

9.51

Isoelectric Point (pI)

48.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240
fragaria_vesca	FvH4_3g04460 FvH4_3g04460 FvH4_3g04460 FvH4_3g04460 FvH4_3g04460
malus_domestica	MD05G1323000.v1.1 MD10G1300800.v1.1
prunus_persica	Prupe.4G039600_v2.0.a1 Prupe.4G039600_v2.0.a1
pyrus_communis	pycom05g29730 pycom10g25370
rosa_chinensis	RchiOBHm_Chr3g0480871 RchiOBHm_Chr5g0006851
rosa_laevigata	RLG00000031434
rosa_multiflora	Rmu_sc0001044.1_g000034 Rmu_sc0002784.1_g000052 Rmu_sc0005956.1_g000005 Rmu_sc0012775.1_g000005
rosa_roxburghii	Rroxscaffold_1G00069200
rosa_rugosa	Rorug01G0182100 Rorug04G0425000 Rorug04G0425100.1
rosa_samantha	Rh5AG052700 Rh5AG052800 Rh5AG071100 Rh5AG371700 Rh5AG433400 Rh5BG051700 Rh5CG060300 Rh5DG050900
rosa_wichuraiana	Rw4G022980 Rw5G005190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1115
AccI	GTMKAC	1 cut(s)	1019
AccII	CGCG	2 cut(s)	1105, 1212
AciI	CCGC	4 cut(s)	69, 653, 1105, 1129
AclWI	GGATC	2 cut(s)	480, 1163
AcsI	RAATTY	5 cut(s)	43, 216, 421, 613, 688
AdeI	CACNNNGTG	1 cut(s)	777
AfaI	GTAC	6 cut(s)	112, 781, 808, 862, 891, 943
AfiI	CCNNNNNNNGG	2 cut(s)	809, 1162
AgsI	TTSAA	5 cut(s)	315, 638, 693, 843, 1123
AjnI	CCWGG	3 cut(s)	622, 851, 1063
AluBI	AGCT	6 cut(s)	88, 161, 677, 848, 1058, 1224
AluI	AGCT	6 cut(s)	88, 161, 677, 848, 1058, 1224
Alw21I	GWGCWC	2 cut(s)	931, 1226
Alw26I	GTCTC	2 cut(s)	907, 930
Alw44I	GTGCAC	1 cut(s)	927
AlwI	GGATC	2 cut(s)	480, 1163
AoxI	GGCC	2 cut(s)	290, 492
ApaLI	GTGCAC	1 cut(s)	927
ApeKI	GCWGC	4 cut(s)	85, 768, 848, 1058
ApoI	RAATTY	5 cut(s)	43, 216, 421, 613, 688
AspA2I	CCTAGG	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	1063
AspS9I	GGNCC	1 cut(s)	797
AsuC2I	CCSGG	1 cut(s)	811
AvaII	GGWCC	1 cut(s)	797
AvrII	CCTAGG	1 cut(s)	269
BaeGI	GKGCMC	1 cut(s)	931
BanII	GRGCYC	1 cut(s)	1226
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	1158
Bbv12I	GWGCWC	2 cut(s)	931, 1226
BbvI	GCAGC	4 cut(s)	97, 780, 835, 1045
BccI	CCATC	4 cut(s)	50, 443, 455, 891
BciT130I	CCWGG	3 cut(s)	624, 853, 1065
BcnI	CCSGG	1 cut(s)	811
BcoDI	GTCTC	2 cut(s)	907, 930
BfaI	CTAG	1 cut(s)	270
BisI	GCNGC	4 cut(s)	86, 769, 849, 1059
BlnI	CCTAGG	1 cut(s)	269
BlsI	GCNGC	4 cut(s)	87, 770, 850, 1060
Bme1390I	CCNGG	4 cut(s)	624, 811, 853, 1065
Bme18I	GGWCC	1 cut(s)	797
BmgT120I	GGNCC	1 cut(s)	797
BmiI	GGNNCC	3 cut(s)	798, 831, 1032
BmrFI	CCNGG	4 cut(s)	624, 811, 853, 1065
BmrI	ACTGGG	1 cut(s)	1171
BmsI	GCATC	4 cut(s)	18, 382, 691, 877
BmuI	ACTGGG	1 cut(s)	1171
BpiI	GAAGAC	1 cut(s)	1158
BpmI	CTGGAG	1 cut(s)	680
BpuEI	CTTGAG	2 cut(s)	17, 497
BpuMI	CCSGG	1 cut(s)	811
BsaAI	YACGTR	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	930
BsaJI	CCNNGG	2 cut(s)	269, 1064
BsaWI	WCCGGW	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	2 cut(s)	809, 1162
Bse1I	ACTGG	2 cut(s)	663, 1166
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	3 cut(s)	624, 853, 1065
BseDI	CCNNGG	2 cut(s)	269, 1064
BseGI	GGATG	6 cut(s)	33, 550, 598, 619, 682, 902
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	2 cut(s)	809, 1162
BseMII	CTCAG	2 cut(s)	683, 1026
BseNI	ACTGG	2 cut(s)	663, 1166
BseSI	GKGCMC	1 cut(s)	931
BseXI	GCAGC	4 cut(s)	97, 780, 835, 1045
Bsh1236I	CGCG	2 cut(s)	1105, 1212
BshFI	GGCC	2 cut(s)	292, 494
BsiHKAI	GWGCWC	2 cut(s)	931, 1226
BsiSI	CCGG	2 cut(s)	362, 810
BslFI	GGGAC	2 cut(s)	669, 810
BslI	CCNNNNNNNGG	2 cut(s)	809, 1162
BsmAI	GTCTC	2 cut(s)	907, 930
BsmFI	GGGAC	2 cut(s)	669, 810
BsnI	GGCC	2 cut(s)	292, 494
Bso31I	GGTCTC	1 cut(s)	930
Bsp1286I	GDGCHC	2 cut(s)	931, 1226
Bsp1407I	TGTACA	2 cut(s)	779, 889
Bsp143I	GATC	3 cut(s)	472, 883, 1168
BspACI	CCGC	4 cut(s)	69, 653, 1105, 1129
BspANI	GGCC	2 cut(s)	292, 494
BspCNI	CTCAG	2 cut(s)	682, 1027
BspFNI	CGCG	2 cut(s)	1105, 1212
BspLI	GGNNCC	3 cut(s)	798, 831, 1032
BspPI	GGATC	2 cut(s)	480, 1163
BspTNI	GGTCTC	1 cut(s)	930
BsrGI	TGTACA	2 cut(s)	779, 889
BsrI	ACTGG	2 cut(s)	663, 1166
BssECI	CCNNGG	2 cut(s)	269, 1064
BssMI	GATC	3 cut(s)	472, 883, 1168
BssSI	CACGAG	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	269
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	3 cut(s)	624, 853, 1065
Bst4CI	ACNGT	4 cut(s)	115, 245, 344, 941
Bst6I	CTCTTC	2 cut(s)	742, 1037
BstAPI	GCANNNNNTGC	1 cut(s)	1075
BstAUI	TGTACA	2 cut(s)	779, 889
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	2 cut(s)	354, 675
BstDEI	CTNAG	2 cut(s)	669, 1035
BstF5I	GGATG	6 cut(s)	33, 550, 598, 619, 682, 902
BstFNI	CGCG	2 cut(s)	1105, 1212
BstHHI	GCGC	1 cut(s)	1063
BstKTI	GATC	3 cut(s)	475, 886, 1171
BstMAI	GTCTC	2 cut(s)	907, 930
BstMBI	GATC	3 cut(s)	472, 883, 1168
BstMWI	GCNNNNNNNGC	3 cut(s)	679, 1075, 1102
BstNI	CCWGG	3 cut(s)	624, 853, 1065
BstNSI	RCATGY	2 cut(s)	111, 1078
BstSCI	CCNGG	4 cut(s)	622, 809, 851, 1063
BstSLI	GKGCMC	1 cut(s)	931
BstSNI	TACGTA	1 cut(s)	580
BstUI	CGCG	2 cut(s)	1105, 1212
BstV1I	GCAGC	4 cut(s)	97, 780, 835, 1045
BstV2I	GAAGAC	1 cut(s)	1158
BstX2I	RGATCY	1 cut(s)	472
BstXI	CCANNNNNNTGG	3 cut(s)	18, 449, 952
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	2 cut(s)	292, 494
BtsCI	GGATG	6 cut(s)	33, 550, 598, 619, 682, 902
Cac8I	GCNNGC	2 cut(s)	354, 675
CfoI	GCGC	1 cut(s)	1063
Cfr13I	GGNCC	1 cut(s)	797
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	6 cut(s)	111, 780, 807, 861, 890, 942
CspCI	CAANNNNNGTGG	2 cut(s)	506, 541
CviAII	CATG	8 cut(s)	18, 108, 804, 826, 893, 910, 1070, 1075
CviQI	GTAC	6 cut(s)	111, 780, 807, 861, 890, 942
DdeI	CTNAG	2 cut(s)	669, 1035
DpnI	GATC	3 cut(s)	474, 885, 1170
DpnII	GATC	3 cut(s)	472, 883, 1168
DraI	TTTAAA	1 cut(s)	1177
DraIII	CACNNNGTG	1 cut(s)	777
Eam1104I	CTCTTC	2 cut(s)	742, 1037
EarI	CTCTTC	2 cut(s)	742, 1037
EciI	GGCGGA	1 cut(s)	84
Ecl136II	GAGCTC	1 cut(s)	1224
Eco105I	TACGTA	1 cut(s)	580
Eco130I	CCWWGG	1 cut(s)	269
Eco147I	AGGCCT	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	1226
Eco31I	GGTCTC	1 cut(s)	930
Eco32I	GATATC	1 cut(s)	666
Eco47I	GGWCC	1 cut(s)	797
Eco53kI	GAGCTC	1 cut(s)	1224
EcoICRI	GAGCTC	1 cut(s)	1224
EcoRI	GAATTC	1 cut(s)	43
EcoRII	CCWGG	3 cut(s)	622, 851, 1063
EcoRV	GATATC	1 cut(s)	666
EcoT14I	CCWWGG	1 cut(s)	269
EcoT38I	GRGCYC	1 cut(s)	1226
ErhI	CCWWGG	1 cut(s)	269
FaeI	CATG	8 cut(s)	21, 111, 807, 829, 896, 913, 1073, 1078
FaqI	GGGAC	2 cut(s)	669, 810
FatI	CATG	8 cut(s)	17, 107, 803, 825, 892, 909, 1069, 1074
FauI	CCCGC	2 cut(s)	646, 1098
FblI	GTMKAC	1 cut(s)	1019
Fnu4HI	GCNGC	4 cut(s)	86, 769, 849, 1059
FokI	GGATG	6 cut(s)	40, 537, 605, 606, 669, 909
FriOI	GRGCYC	1 cut(s)	1226
Fsp4HI	GCNGC	4 cut(s)	86, 769, 849, 1059
FspBI	CTAG	1 cut(s)	270
GlaI	GCGC	1 cut(s)	1062
GluI	GCNGC	4 cut(s)	86, 769, 849, 1059
GsuI	CTGGAG	1 cut(s)	680
HaeIII	GGCC	2 cut(s)	292, 494
HapII	CCGG	2 cut(s)	362, 810
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	1 cut(s)	1063
Hin1II	CATG	8 cut(s)	21, 111, 807, 829, 896, 913, 1073, 1078
Hin6I	GCGC	1 cut(s)	1061
HinP1I	GCGC	1 cut(s)	1061
HincII	GTYRAC	3 cut(s)	303, 1020, 1101
HindII	GTYRAC	3 cut(s)	303, 1020, 1101
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	2 cut(s)	72, 193
HpaII	CCGG	2 cut(s)	362, 810
Hpy166II	GTNNAC	8 cut(s)	248, 303, 780, 929, 982, 1020, 1101, 1208
Hpy188I	TCNGA	2 cut(s)	55, 277
Hpy188III	TCNNGA	9 cut(s)	34, 76, 231, 416, 476, 554, 843, 905, 1034
Hpy8I	GTNNAC	8 cut(s)	248, 303, 780, 929, 982, 1020, 1101, 1208
Hpy99I	CGWCG	1 cut(s)	1021
HpyAV	CCTTC	3 cut(s)	815, 1001, 1129
HpyCH4III	ACNGT	4 cut(s)	115, 245, 344, 941
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	3 cut(s)	107, 682, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	679, 1075, 1102
HpyF3I	CTNAG	2 cut(s)	669, 1035
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	8 cut(s)	21, 111, 807, 829, 896, 913, 1073, 1078
HspAI	GCGC	1 cut(s)	1061
Kzo9I	GATC	3 cut(s)	472, 883, 1168
LmnI	GCTCC	1 cut(s)	835
Lsp1109I	GCAGC	4 cut(s)	97, 780, 835, 1045
LweI	GCATC	4 cut(s)	18, 382, 691, 877
MaeI	CTAG	1 cut(s)	270
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	6, 344, 485
MalI	GATC	3 cut(s)	474, 885, 1170
MboI	GATC	3 cut(s)	472, 883, 1168
MboII	GAAGA	7 cut(s)	404, 639, 759, 1051, 1054, 1160, 1163
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	2 cut(s)	931, 1226
MluCI	AATT	9 cut(s)	43, 216, 421, 613, 639, 688, 711, 717, 1080
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	6 cut(s)	261, 303, 484, 589, 758, 1086
MseI	TTAA	3 cut(s)	320, 1176, 1228
MslI	CAYNNNNRTG	2 cut(s)	22, 447
MspA1I	CMGCKG	2 cut(s)	88, 1129
MspI	CCGG	2 cut(s)	362, 810
MspR9I	CCNGG	4 cut(s)	624, 811, 853, 1065
MvaI	CCWGG	3 cut(s)	624, 853, 1065
MvnI	CGCG	2 cut(s)	1105, 1212
MwoI	GCNNNNNNNGC	3 cut(s)	679, 1075, 1102
NciI	CCSGG	1 cut(s)	811
NdeII	GATC	3 cut(s)	472, 883, 1168
NlaIII	CATG	8 cut(s)	21, 111, 807, 829, 896, 913, 1073, 1078
NlaIV	GGNNCC	3 cut(s)	798, 831, 1032
NmuCI	GTSAC	1 cut(s)	6
NspI	RCATGY	2 cut(s)	111, 1078
PceI	AGGCCT	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	72, 193
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	4 cut(s)	87, 770, 850, 1060
Ppu21I	YACGTR	1 cut(s)	580
PsiI	TTATAA	1 cut(s)	1115
Psp124BI	GAGCTC	1 cut(s)	1226
Psp6I	CCWGG	3 cut(s)	622, 851, 1063
PspGI	CCWGG	3 cut(s)	622, 851, 1063
PspN4I	GGNNCC	3 cut(s)	798, 831, 1032
PspPI	GGNCC	1 cut(s)	797
PsuI	RGATCY	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	6 cut(s)	112, 781, 808, 862, 891, 943
RsaNI	GTAC	6 cut(s)	111, 780, 807, 861, 890, 942
RseI	CAYNNNNRTG	2 cut(s)	22, 447
SacI	GAGCTC	1 cut(s)	1226
SalI	GTCGAC	1 cut(s)	1018
SaqAI	TTAA	3 cut(s)	320, 1176, 1228
SatI	GCNGC	4 cut(s)	86, 769, 849, 1059
Sau3AI	GATC	3 cut(s)	472, 883, 1168
Sau96I	GGNCC	1 cut(s)	797
ScrFI	CCNGG	4 cut(s)	624, 811, 853, 1065
SduI	GDGCHC	2 cut(s)	931, 1226
SfaNI	GCATC	4 cut(s)	18, 382, 691, 877
SinI	GGWCC	1 cut(s)	797
SmiMI	CAYNNNNRTG	2 cut(s)	22, 447
SmlI	CTYRAG	3 cut(s)	32, 476, 1219
SmoI	CTYRAG	3 cut(s)	32, 476, 1219
SnaBI	TACGTA	1 cut(s)	580
Sse9I	AATT	9 cut(s)	43, 216, 421, 613, 639, 688, 711, 717, 1080
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	4 cut(s)	69, 653, 1105, 1129
SspMI	CTAG	1 cut(s)	270
SstI	GAGCTC	1 cut(s)	1226
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	4 cut(s)	622, 809, 851, 1063
StyI	CCWWGG	1 cut(s)	269
TaaI	ACNGT	4 cut(s)	115, 245, 344, 941
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	3 cut(s)	230, 327, 1019
TasI	AATT	9 cut(s)	43, 216, 421, 613, 639, 688, 711, 717, 1080
TatI	WGTACW	3 cut(s)	779, 860, 889
TfiI	GAWTC	2 cut(s)	72, 193
Tru1I	TTAA	3 cut(s)	320, 1176, 1228
Tru9I	TTAA	3 cut(s)	320, 1176, 1228
TseFI	GTSAC	1 cut(s)	6
TseI	GCWGC	4 cut(s)	85, 768, 848, 1058
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	5 cut(s)	17, 95, 115, 608, 731
VneI	GTGCAC	1 cut(s)	927
VpaK11BI	GGWCC	1 cut(s)	797
XapI	RAATTY	5 cut(s)	43, 216, 421, 613, 688
XceI	RCATGY	2 cut(s)	111, 1078
XmaJI	CCTAGG	1 cut(s)	269
XmiI	GTMKAC	1 cut(s)	1019
XspI	CTAG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.