Rh5AG052800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0001643
Physical Location & Seq
Reverse (-)
4471215 .. 4478904
7690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG052800.1

Sequence Viewer

Length: 231 bp
ATGGCTGAGACCTATTGCTGGCCTTGTAAGGTTGCAGTCGGGCTTGTGCTTGTTGAGATTGCTGGTGACCGACTGGAATGCCCTGGAGAGGTTCACATGGCTGCTGCTGCTTACGCTTCTTTATATCATGCTCATGTGTTGATCATACTGGGGAAGAGTTTCTGGATCACAAGAGAAGAAGAACCGTTACAAATTTCTCTGCTTTTTGTTTTTTTCCGGTTTGTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.6

Weight (kDa)

5.44

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 173
AcsI RAATTY 1 cut(s) 192
AfiI CCNNNNNNNGG 2 cut(s) 18, 88
AjnI CCWGG 1 cut(s) 82
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 1 cut(s) 173
AoxI GGCC 1 cut(s) 20
ApeKI GCWGC 3 cut(s) 101, 104, 107
ApoI RAATTY 1 cut(s) 192
Asp700I GAANNNNTTC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 77
BarI GAAGNNNNNNTAC 2 cut(s) 171, 203
BbvI GCAGC 3 cut(s) 88, 91, 94
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BciT130I CCWGG 1 cut(s) 84
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 2
BisI GCNGC 3 cut(s) 102, 105, 108
BlsI GCNGC 3 cut(s) 103, 106, 109
Bme1390I CCNGG 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 84
BmrI ACTGGG 1 cut(s) 158
BmuI ACTGGG 1 cut(s) 158
BpmI CTGGAG 1 cut(s) 105
BsaI GGTCTC 1 cut(s) 2
BsaJI CCNNGG 1 cut(s) 82
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 88
Bse1I ACTGG 2 cut(s) 78, 153
BseBI CCWGG 1 cut(s) 84
BseDI CCNNGG 1 cut(s) 82
BseLI CCNNNNNNNGG 2 cut(s) 18, 88
BseNI ACTGG 2 cut(s) 78, 153
BseXI GCAGC 3 cut(s) 88, 91, 94
BshFI GGCC 1 cut(s) 22
BsiSI CCGG 1 cut(s) 217
BslI CCNNNNNNNGG 2 cut(s) 18, 88
BsmAI GTCTC 1 cut(s) 2
BsmI GAATGC 1 cut(s) 83
BsnI GGCC 1 cut(s) 22
Bso31I GGTCTC 1 cut(s) 2
Bsp143I GATC 2 cut(s) 141, 165
BspANI GGCC 1 cut(s) 22
BspPI GGATC 1 cut(s) 173
BspTNI GGTCTC 1 cut(s) 2
BsrI ACTGG 2 cut(s) 78, 153
BssECI CCNNGG 1 cut(s) 82
BssMI GATC 2 cut(s) 141, 165
Bst2UI CCWGG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 186
Bst6I CTCTTC 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 20
BstDEI CTNAG 1 cut(s) 6
BstEII GGTNACC 1 cut(s) 65
BstKTI GATC 2 cut(s) 144, 168
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 2 cut(s) 141, 165
BstMWI GCNNNNNNNGC 2 cut(s) 107, 113
BstNI CCWGG 1 cut(s) 84
BstPI GGTNACC 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 82
BstV1I GCAGC 3 cut(s) 88, 91, 94
BsuRI GGCC 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 20
CviAII CATG 4 cut(s) 97, 128, 134, 226
CviJI RGCY 4 cut(s) 5, 22, 43, 101
CviKI_1 RGCY 4 cut(s) 5, 22, 43, 101
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 143, 167
DpnII GATC 2 cut(s) 141, 165
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
Eco31I GGTCTC 1 cut(s) 2
Eco91I GGTNACC 1 cut(s) 65
EcoO65I GGTNACC 1 cut(s) 65
EcoRII CCWGG 1 cut(s) 82
FaeI CATG 4 cut(s) 100, 131, 137, 229
FaiI YATR 6 cut(s) 98, 124, 129, 135, 146, 227
FatI CATG 4 cut(s) 96, 127, 133, 225
FbaI TGATCA 1 cut(s) 141
Fnu4HI GCNGC 3 cut(s) 102, 105, 108
Fsp4HI GCNGC 3 cut(s) 102, 105, 108
GluI GCNGC 3 cut(s) 102, 105, 108
GsuI CTGGAG 1 cut(s) 105
HaeIII GGCC 1 cut(s) 22
HapII CCGG 1 cut(s) 217
Hin1II CATG 4 cut(s) 100, 131, 137, 229
HpaII CCGG 1 cut(s) 217
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 113
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 4 cut(s) 100, 131, 137, 229
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 2 cut(s) 141, 165
LpnPI CCDG 7 cut(s) 4, 48, 59, 69, 96, 134, 148
Lsp1109I GCAGC 3 cut(s) 88, 91, 94
MaeIII GTNAC 2 cut(s) 65, 186
MalI GATC 2 cut(s) 143, 167
MboI GATC 2 cut(s) 141, 165
MboII GAAGA 3 cut(s) 166, 188, 191
MluCI AATT 1 cut(s) 192
MnlI CCTC 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 158
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 1 cut(s) 84
Mva1269I GAATGC 1 cut(s) 83
MvaI CCWGG 1 cut(s) 84
MwoI GCNNNNNNNGC 2 cut(s) 107, 113
NdeII GATC 2 cut(s) 141, 165
NlaIII CATG 4 cut(s) 100, 131, 137, 229
NmuCI GTSAC 1 cut(s) 65
PctI GAATGC 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 158
PkrI GCNGC 3 cut(s) 103, 106, 109
Psp6I CCWGG 1 cut(s) 82
PspEI GGTNACC 1 cut(s) 65
PspGI CCWGG 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 132
SatI GCNGC 3 cut(s) 102, 105, 108
Sau3AI GATC 2 cut(s) 141, 165
ScrFI CCNGG 1 cut(s) 84
SetI ASST 3 cut(s) 14, 33, 93
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 1 cut(s) 192
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 186
TaqII GACCGA 1 cut(s) 84
TasI AATT 1 cut(s) 192
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 3 cut(s) 101, 104, 107
Tsp45I GTSAC 1 cut(s) 65
XapI RAATTY 1 cut(s) 192
XmnI GAANNNNTTC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.