Rmu_sc0005956.1_g000005

Protein of unknown function (DUF707)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005956.1
Physical Location & Seq
Reverse (-)
29468 .. 30723
1256 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005956.1_g000005.1.cds

Sequence Viewer

Length: 396 bp
ctggctattgcaactggtattaagcagaaacatagtgttgatgatattgtgcaaaagtttcttccagaaaactttacgattatactattccattatgatgggaatgttaaagggtggtgggatcttgagtggagtaaccaggccatacacatagttgcccacaaccaaacaaagtggtggtttgcaaaacgatttctacatccagatgttgtgtccatttatgattacatattcctttgggatgaagatttgggggttgaggattttaaaggtattattctggattatgttccaactgtatttgacaacttcagtgctaatgttttggttgatgggcagactgtgaatctgggtctctgggatactgctggtactatttctttctacctctcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

15.18

Weight (kDa)

4.65

Isoelectric Point (pI)

27.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 295
AfaI GTAC 1 cut(s) 373
AjnI CCWGG 1 cut(s) 138
Alw26I GTCTC 1 cut(s) 359
AlwI GGATC 1 cut(s) 129
AoxI GGCC 1 cut(s) 141
BccI CCATC 2 cut(s) 92, 326
BciT130I CCWGG 1 cut(s) 140
BciVI GTATCC 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 359
BfuI GTATCC 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 140
BmrFI CCNGG 1 cut(s) 140
BpuEI CTTGAG 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 359
Bse1I ACTGG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 140
BseGI GGATG 2 cut(s) 199, 247
BseNI ACTGG 1 cut(s) 19
BshFI GGCC 1 cut(s) 143
BsmAI GTCTC 1 cut(s) 359
BsnI GGCC 1 cut(s) 143
Bso31I GGTCTC 1 cut(s) 359
Bsp143I GATC 1 cut(s) 121
BspANI GGCC 1 cut(s) 143
BspPI GGATC 1 cut(s) 129
BspTNI GGTCTC 1 cut(s) 359
BsrI ACTGG 1 cut(s) 19
BssMI GATC 1 cut(s) 121
Bst2UI CCWGG 1 cut(s) 140
Bst4CI ACNGT 2 cut(s) 298, 343
BstDEI CTNAG 1 cut(s) 393
BstF5I GGATG 2 cut(s) 199, 247
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 1 cut(s) 121
BstNI CCWGG 1 cut(s) 140
BstSCI CCNGG 1 cut(s) 138
BstX2I RGATCY 1 cut(s) 121
BstXI CCANNNNNNTGG 1 cut(s) 98
BstYI RGATCY 1 cut(s) 121
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 143
BtsCI GGATG 2 cut(s) 199, 247
BtsIMutI CAGTG 1 cut(s) 319
Csp6I GTAC 1 cut(s) 372
CspCI CAANNNNNGTGG 2 cut(s) 155, 190
CviJI RGCY 2 cut(s) 5, 143
CviKI_1 RGCY 2 cut(s) 5, 143
CviQI GTAC 1 cut(s) 372
DdeI CTNAG 1 cut(s) 393
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
DraI TTTAAA 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 359
Eco57I CTGAAG 1 cut(s) 295
EcoRII CCWGG 1 cut(s) 138
FaiI YATR 8 cut(s) 33, 83, 96, 146, 152, 222, 230, 288
FokI GGATG 2 cut(s) 186, 254
HaeIII GGCC 1 cut(s) 143
HinfI GANTC 1 cut(s) 346
Hpy188III TCNNGA 4 cut(s) 65, 125, 203, 281
HpyCH4III ACNGT 2 cut(s) 298, 343
HpyCH4V TGCA 3 cut(s) 11, 52, 185
HpyF3I CTNAG 1 cut(s) 393
Kzo9I GATC 1 cut(s) 121
LpnPI CCDG 8 cut(s) 78, 125, 152, 216, 266, 335, 343, 354
MaeIII GTNAC 1 cut(s) 134
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 2 cut(s) 53, 257
MflI RGATCY 1 cut(s) 121
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 1 cut(s) 253
MseI TTAA 3 cut(s) 21, 108, 267
MslI CAYNNNNRTG 2 cut(s) 96, 204
MspR9I CCNGG 1 cut(s) 140
MvaI CCWGG 1 cut(s) 140
NdeII GATC 1 cut(s) 121
PfeI GAWTC 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 138
PspGI CCWGG 1 cut(s) 138
PsuI RGATCY 1 cut(s) 121
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
RseI CAYNNNNRTG 2 cut(s) 96, 204
SaqAI TTAA 3 cut(s) 21, 108, 267
Sau3AI GATC 1 cut(s) 121
ScrFI CCNGG 1 cut(s) 140
SetI ASST 2 cut(s) 274, 390
SmiMI CAYNNNNRTG 2 cut(s) 96, 204
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 138
TaaI ACNGT 2 cut(s) 298, 343
TfiI GAWTC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 21, 108, 267
Tru9I TTAA 3 cut(s) 21, 108, 267
TscAI CASTG 1 cut(s) 319
TspDTI ATGAA 1 cut(s) 258
TspRI CASTG 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.