RchiOBHm_Chr3g0480871

Protein of unknown function (DUF707)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0001643
Physical Location & Seq
Reverse (-)
26801982 .. 26804193
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44587

Sequence Viewer

Length: 810 bp
ATGTTGGATGAAATTCTTTTGAGCTCCAGAAAGTTGGACGGTTTGCCTCGTGGCATAATACAAGCTAGGTCGGATTTAGAGCTGAGGCCTTTATGGCTGACTAGTTCAAAGTTAACGGTTGATTATAGCAATCGCAATTTACTGGCTATTGCAGCTGGTATTAAGCAGAAACATAGTGTTGATGATATTGTGCAAAAGTTTCTTCCAGAAAACTTTACGATTATACTATTCCATTATGATGGGAATGTTAAAGGGTGGTGGGATCTTGAGTGGAGTAATCAGGCCATACACATAGTTGCCCACAACCAAACAAAGTGGTGGTTTGCAAAACGATTTCCACATCCAGATGTTGTGTCCATTTATGATTACATATTCCTTTGGGATGAAGATTTGGGGGTTGAGGATTTTAACCCCCAGCAAGGTACTATTCTGGTGTACCTTGAAATTGTAAGAGAAGCAGGACTGGAGATATCTCAGCCAGCTTTGCATCCAAATTCATCTGATTTACATCATAGAATTACAGTTTGTGCTGAAAAAAAGAAGTTCCATAGAAGAGTTTATGATAGTAGAGACAGTGTGAAGTGTACGGAGGAAAGTCGAGGACCACCATGCACTAGGTTTGTGGAAGGTATGGCTCCGGTCTTTTCAAGATCTGCCTGGTATTGTACTTGGCATCTTATACAGGTAATCTCTATTTATTGGTCTGTAGCTTCAATTAATATTTTGACATATGATGAAGAAAATCATACTCTTGTTACTACTTACATCAAACTTTTACTATCAAATAGCTCCATATCCTCAATGTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF707

Protein Analysis

269

Amino Acids

31.23

Weight (kDa)

6.11

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF707 PF05212 11 - 229 3.3e-95 Protein of unknown function (DUF707)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 270
AcsI RAATTY 2 cut(s) 12, 493
AfaI GTAC 4 cut(s) 424, 437, 586, 667
AfiI CCNNNNNNNGG 1 cut(s) 419
AgsI TTSAA 4 cut(s) 108, 443, 648, 714
AhlI ACTAGT 1 cut(s) 101
AjnI CCWGG 1 cut(s) 656
AluBI AGCT 7 cut(s) 24, 65, 82, 155, 482, 710, 789
AluI AGCT 7 cut(s) 24, 65, 82, 155, 482, 710, 789
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 564
AlwI GGATC 1 cut(s) 270
AoxI GGCC 2 cut(s) 86, 282
ApeKI GCWGC 1 cut(s) 152
ApoI RAATTY 2 cut(s) 12, 493
AseI ATTAAT 1 cut(s) 717
AspS9I GGNCC 1 cut(s) 602
AvaII GGWCC 1 cut(s) 602
BanII GRGCYC 1 cut(s) 26
BauI CACGAG 1 cut(s) 48
Bbv12I GWGCWC 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 164
BccI CCATC 1 cut(s) 233
BciT130I CCWGG 1 cut(s) 658
BcoDI GTCTC 1 cut(s) 564
BcuI ACTAGT 1 cut(s) 101
BfaI CTAG 3 cut(s) 66, 102, 615
BfmI CTRYAG 1 cut(s) 705
BglI GCCNNNNNGGC 1 cut(s) 94
BglII AGATCT 1 cut(s) 650
BisI GCNGC 1 cut(s) 153
BlsI GCNGC 1 cut(s) 154
Bme1390I CCNGG 1 cut(s) 658
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 1 cut(s) 602
BmiI GGNNCC 1 cut(s) 636
BmrFI CCNGG 1 cut(s) 658
BmsI GCATC 2 cut(s) 496, 682
BpmI CTGGAG 2 cut(s) 10, 485
Bpu10I CCTNAGC 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 287
BsaBI GATNNNNATC 1 cut(s) 507
BsaWI WCCGGW 1 cut(s) 637
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 2 cut(s) 147, 468
Bse8I GATNNNNATC 1 cut(s) 507
BseBI CCWGG 1 cut(s) 658
BseGI GGATG 4 cut(s) 13, 340, 388, 487
BseJI GATNNNNATC 1 cut(s) 507
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMII CTCAG 2 cut(s) 74, 488
BseNI ACTGG 2 cut(s) 147, 468
BseXI GCAGC 1 cut(s) 164
BseYI CCCAGC 1 cut(s) 414
BshFI GGCC 2 cut(s) 88, 284
BsiHKAI GWGCWC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 638
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 1 cut(s) 564
BsnI GGCC 2 cut(s) 88, 284
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 2 cut(s) 262, 650
BspANI GGCC 2 cut(s) 88, 284
BspCNI CTCAG 2 cut(s) 75, 487
BspLI GGNNCC 1 cut(s) 636
BspPI GGATC 1 cut(s) 270
BsrI ACTGG 2 cut(s) 147, 468
BssMI GATC 2 cut(s) 262, 650
BssSI CACGAG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 48
Bst2UI CCWGG 1 cut(s) 658
Bst4CI ACNGT 4 cut(s) 41, 118, 523, 575
Bst6I CTCTTC 1 cut(s) 547
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 2 cut(s) 83, 474
BstF5I GGATG 4 cut(s) 13, 340, 388, 487
BstKTI GATC 2 cut(s) 265, 653
BstMAI GTCTC 1 cut(s) 564
BstMBI GATC 2 cut(s) 262, 650
BstMWI GCNNNNNNNGC 3 cut(s) 94, 152, 484
BstNI CCWGG 1 cut(s) 658
BstSCI CCNGG 1 cut(s) 656
BstSFI CTRYAG 1 cut(s) 705
BstV1I GCAGC 1 cut(s) 164
BstX2I RGATCY 2 cut(s) 262, 650
BstXI CCANNNNNNTGG 2 cut(s) 34, 239
BstYI RGATCY 2 cut(s) 262, 650
BsuRI GGCC 2 cut(s) 88, 284
BtsCI GGATG 4 cut(s) 13, 340, 388, 487
BtsIMutI CAGTG 1 cut(s) 580
Cac8I GCNNGC 1 cut(s) 480
Cfr13I GGNCC 1 cut(s) 602
Csp6I GTAC 4 cut(s) 423, 436, 585, 666
CspCI CAANNNNNGTGG 2 cut(s) 296, 331
CviAII CATG 1 cut(s) 609
CviQI GTAC 4 cut(s) 423, 436, 585, 666
DdeI CTNAG 2 cut(s) 83, 474
DpnI GATC 2 cut(s) 264, 652
DpnII GATC 2 cut(s) 262, 650
Eam1104I CTCTTC 1 cut(s) 547
EarI CTCTTC 1 cut(s) 547
Ecl136II GAGCTC 1 cut(s) 24
Eco147I AGGCCT 1 cut(s) 88
Eco24I GRGCYC 1 cut(s) 26
Eco32I GATATC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 602
Eco53kI GAGCTC 1 cut(s) 24
EcoICRI GAGCTC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 656
EcoRV GATATC 1 cut(s) 471
EcoT38I GRGCYC 1 cut(s) 26
FaeI CATG 1 cut(s) 612
FatI CATG 1 cut(s) 608
FauNDI CATATG 1 cut(s) 730
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 4 cut(s) 20, 327, 395, 474
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 3 cut(s) 66, 102, 615
GluI GCNGC 1 cut(s) 153
GsaI CCCAGC 1 cut(s) 418
GsuI CTGGAG 2 cut(s) 10, 485
HaeIII GGCC 2 cut(s) 88, 284
HapII CCGG 1 cut(s) 638
Hin1II CATG 1 cut(s) 612
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HpaI GTTAAC 1 cut(s) 114
HpaII CCGG 1 cut(s) 638
Hpy166II GTNNAC 3 cut(s) 114, 436, 585
Hpy188I TCNGA 2 cut(s) 73, 502
Hpy188III TCNNGA 5 cut(s) 27, 206, 266, 344, 648
Hpy8I GTNNAC 3 cut(s) 114, 436, 585
HpyAV CCTTC 1 cut(s) 620
HpyCH4III ACNGT 4 cut(s) 41, 118, 523, 575
HpyCH4V TGCA 5 cut(s) 152, 193, 326, 487, 612
HpyF10VI GCNNNNNNNGC 3 cut(s) 94, 152, 484
HpyF3I CTNAG 2 cut(s) 83, 474
Hsp92II CATG 1 cut(s) 612
KspAI GTTAAC 1 cut(s) 114
Kzo9I GATC 2 cut(s) 262, 650
LmnI GCTCC 3 cut(s) 29, 640, 794
Lsp1109I GCAGC 1 cut(s) 164
LweI GCATC 2 cut(s) 496, 682
MaeI CTAG 3 cut(s) 66, 102, 615
MaeIII GTNAC 1 cut(s) 754
MalI GATC 2 cut(s) 264, 652
MboI GATC 2 cut(s) 262, 650
MboII GAAGA 4 cut(s) 194, 398, 564, 749
MflI RGATCY 2 cut(s) 262, 650
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 6 cut(s) 12, 136, 444, 493, 516, 714
MmeI TCCRAC 2 cut(s) 15, 51
MnlI CCTC 6 cut(s) 57, 78, 394, 583, 593, 808
MseI TTAA 5 cut(s) 113, 162, 249, 408, 717
MslI CAYNNNNRTG 2 cut(s) 237, 345
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 1 cut(s) 638
MspR9I CCNGG 1 cut(s) 658
MvaI CCWGG 1 cut(s) 658
MwoI GCNNNNNNNGC 3 cut(s) 94, 152, 484
NdeI CATATG 1 cut(s) 730
NdeII GATC 2 cut(s) 262, 650
NlaIII CATG 1 cut(s) 612
NlaIV GGNNCC 1 cut(s) 636
PceI AGGCCT 1 cut(s) 88
PkrI GCNGC 1 cut(s) 154
PshBI ATTAAT 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 26
Psp6I CCWGG 1 cut(s) 656
PspFI CCCAGC 1 cut(s) 414
PspGI CCWGG 1 cut(s) 656
PspN4I GGNNCC 1 cut(s) 636
PspPI GGNCC 1 cut(s) 602
PsuI RGATCY 2 cut(s) 262, 650
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 4 cut(s) 424, 437, 586, 667
RsaNI GTAC 4 cut(s) 423, 436, 585, 666
RseI CAYNNNNRTG 2 cut(s) 237, 345
SacI GAGCTC 1 cut(s) 26
SaqAI TTAA 5 cut(s) 113, 162, 249, 408, 717
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 262, 650
Sau96I GGNCC 1 cut(s) 602
ScrFI CCNGG 1 cut(s) 658
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 2 cut(s) 496, 682
SfcI CTRYAG 1 cut(s) 705
SinI GGWCC 1 cut(s) 602
SmiMI CAYNNNNRTG 2 cut(s) 237, 345
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SpeI ACTAGT 1 cut(s) 101
Sse9I AATT 6 cut(s) 12, 136, 444, 493, 516, 714
SseBI AGGCCT 1 cut(s) 88
SspI AATATT 1 cut(s) 721
SspMI CTAG 3 cut(s) 66, 102, 615
SstI GAGCTC 1 cut(s) 26
StuI AGGCCT 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 656
TaaI ACNGT 4 cut(s) 41, 118, 523, 575
TaqI TCGA 1 cut(s) 598
TasI AATT 6 cut(s) 12, 136, 444, 493, 516, 714
TatI WGTACW 1 cut(s) 665
Tru1I TTAA 5 cut(s) 113, 162, 249, 408, 717
Tru9I TTAA 5 cut(s) 113, 162, 249, 408, 717
TscAI CASTG 1 cut(s) 580
TseI GCWGC 1 cut(s) 152
TspDTI ATGAA 4 cut(s) 24, 399, 486, 750
TspGWI ACGGA 1 cut(s) 602
TspRI CASTG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 602
VspI ATTAAT 1 cut(s) 717
XapI RAATTY 2 cut(s) 12, 493
XspI CTAG 3 cut(s) 66, 102, 615
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.