Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001643

Physical Location & Seq

Genomic Coordinates Reverse (-)

1851594 .. 1857501

Gene Structure 5908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G039600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGAAGTCGCCAAACTCATGGATATGGGTGTTCAAGAAAAGGAGTGCTTTCTCTGATGGAGGAAAATGCGGATTGAAGATGAAGCAGCTGTCGTTTATGGGAGTTGTATGTACAGTAATGCTGTTCATTGTGTATAGAACCACCAACTACCAATATCAAGCTTATCAGCAGACAGAGATGGACGCAAAATGGAATCCCTTTGACACAGTAAAGGATATTTTTGTGACTTCCAAAAAGTTGGACAGTTTACCTCGTGGCATAATACAAGCTAGGTCAGATTTAGAGCTAAGGCCTTTATGGTTGACAAGTGGGTCAAGGTTAAAGGTCGATGATTATAGCCATCGTAACTTGCTGGCTATTCCGGTTGGTATTAAGCAAAAGGATAGTGTTGATGCTATTGTGGAAAAGTTTCTTCCAGAAAACTTTACCATCATTCTATTCCATTATGATGGGAATGTTGATGGGTGGTGGGATCTTGAGTGGAGTAGCAATGCCATACACATAGTTGCCCAGAACCAAACAAAGTGGTGGTTTGCTAAACGCTTTCTACATCCAGATATTGTGTCCATTTATGATTACGTGTTTCTTTGGGATGAAGATTTGGGGGTTGAGAATTTTCATCCAGGAAGATATCTTGAAATTGTTAGACAAGCAGGACTGGAGATATCTCAGCCAGCTTTGCATCCAAATTCAACAGATATACATCATAGAATTACAATTCGTGCTAGAAAAAAGAAGTTCCATAGAAGAGTTTATGACATCAGAGGCAGTGTGAAGTGTACAGAAGCAAGTCAGACACCACCATGCACTGGGTTTGTGGAAGGTATGGCTCCGGTTTTTTCAAGAGCTGCCTGGCATTGTACTTGGCACCTTATACAGAATGATCTTGTACATGGATGGGGTCTGGACATGAAACTTGGATATTGTGCACAGGGAGACCGTACGACGAAGGTGGGAGTTGTTGATAGTGAATATGTTGTTCATAAGGGCATACAAACTTTGGGAGATGGTGGTTTGTCTGCAAGAAAGGTTTCCAGTCGTGGGAAGACAAGCAAGAAACGTGGTGCTTCAGGTTTTGATGTGCGAACTGAGATTAGGAGGCAATCAACGCGGGAGTTTTCAATCTTCAAAGAGCGATGGAATAATGCTGTAGACGAGGACATGAACTGGACTGATCCATTTAAAAGTAGCATAAGACGCCGGAAACAGCGCAAACGAAACACCCATTTGAGCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

413

Amino Acids

47.7

Weight (kDa)

9.59

Isoelectric Point (pI)

43.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240
fragaria_vesca	FvH4_3g04460 FvH4_3g04460 FvH4_3g04460 FvH4_3g04460 FvH4_3g04460
malus_domestica	MD05G1323000.v1.1 MD10G1300800.v1.1
prunus_persica	Prupe.4G039600_v2.0.a1 Prupe.4G039600_v2.0.a1
pyrus_communis	pycom05g29730 pycom10g25370
rosa_chinensis	RchiOBHm_Chr3g0480871 RchiOBHm_Chr5g0006851
rosa_laevigata	RLG00000031434
rosa_multiflora	Rmu_sc0001044.1_g000034 Rmu_sc0002784.1_g000052 Rmu_sc0005956.1_g000005 Rmu_sc0012775.1_g000005
rosa_roxburghii	Rroxscaffold_1G00069200
rosa_rugosa	Rorug01G0182100 Rorug04G0425000 Rorug04G0425100.1
rosa_samantha	Rh5AG052700 Rh5AG052800 Rh5AG071100 Rh5AG371700 Rh5AG433400 Rh5BG051700 Rh5CG060300 Rh5DG050900
rosa_wichuraiana	Rw4G022980 Rw5G005190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	867
AccB7I	CCANNNNNTGG	1 cut(s)	809
AccI	GTMKAC	1 cut(s)	1152
AccII	CGCG	1 cut(s)	1111
AciI	CCGC	2 cut(s)	69, 1111
AclWI	GGATC	2 cut(s)	480, 1169
AcsI	RAATTY	2 cut(s)	613, 688
AcuI	CTGAAG	1 cut(s)	1053
AcyI	GRCGYC	1 cut(s)	1198
AfaI	GTAC	5 cut(s)	112, 781, 862, 891, 943
AfiI	CCNNNNNNNGG	2 cut(s)	809, 1041
AflIII	ACRYGT	1 cut(s)	579
AgsI	TTSAA	7 cut(s)	34, 76, 638, 693, 843, 1122, 1129
AjnI	CCWGG	2 cut(s)	622, 851
AluBI	AGCT	7 cut(s)	88, 161, 269, 286, 677, 848, 1233
AluI	AGCT	7 cut(s)	88, 161, 269, 286, 677, 848, 1233
Alw21I	GWGCWC	2 cut(s)	931, 1235
Alw26I	GTCTC	1 cut(s)	930
Alw44I	GTGCAC	1 cut(s)	927
AlwI	GGATC	2 cut(s)	480, 1169
AoxI	GGCC	1 cut(s)	290
ApaLI	GTGCAC	1 cut(s)	927
ApeKI	GCWGC	2 cut(s)	85, 848
ApoI	RAATTY	2 cut(s)	613, 688
Asp700I	GAANNNNTTC	2 cut(s)	408, 1030
AspLEI	GCGC	1 cut(s)	1212
BaeGI	GKGCMC	1 cut(s)	931
BanI	GGYRCC	1 cut(s)	867
BanII	GRGCYC	1 cut(s)	1235
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	1052
Bbv12I	GWGCWC	2 cut(s)	931, 1235
BbvI	GCAGC	2 cut(s)	97, 835
BccI	CCATC	9 cut(s)	50, 172, 348, 437, 443, 455, 891, 1001, 1131
BciT130I	CCWGG	2 cut(s)	624, 853
BcoDI	GTCTC	1 cut(s)	930
BfaI	CTAG	2 cut(s)	270, 726
BfmI	CTRYAG	1 cut(s)	1149
BisI	GCNGC	2 cut(s)	86, 849
BlsI	GCNGC	2 cut(s)	87, 850
Bme1390I	CCNGG	2 cut(s)	624, 853
BmiI	GGNNCC	2 cut(s)	831, 869
BmrFI	CCNGG	2 cut(s)	624, 853
BmrI	ACTGGG	1 cut(s)	819
BmsI	GCATC	2 cut(s)	382, 691
BmuI	ACTGGG	1 cut(s)	819
BpiI	GAAGAC	1 cut(s)	1052
BpmI	CTGGAG	1 cut(s)	680
Bpu10I	CCTNAGC	1 cut(s)	287
BpuEI	CTTGAG	1 cut(s)	497
BsaAI	YACGTR	1 cut(s)	580
BsaBI	GATNNNNATC	1 cut(s)	702
BsaHI	GRCGYC	1 cut(s)	1198
BsaI	GGTCTC	1 cut(s)	930
BsaWI	WCCGGW	2 cut(s)	361, 832
Bsc4I	CCNNNNNNNGG	2 cut(s)	809, 1041
Bse1I	ACTGG	4 cut(s)	663, 814, 1035, 1172
Bse3DI	GCAATG	1 cut(s)	496
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	2 cut(s)	624, 853
BseGI	GGATG	5 cut(s)	550, 598, 619, 682, 902
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	2 cut(s)	809, 1041
BseMI	GCAATG	1 cut(s)	496
BseMII	CTCAG	2 cut(s)	683, 1080
BseNI	ACTGG	4 cut(s)	663, 814, 1035, 1172
BseSI	GKGCMC	1 cut(s)	931
BseXI	GCAGC	2 cut(s)	97, 835
Bsh1236I	CGCG	1 cut(s)	1111
BshFI	GGCC	1 cut(s)	292
BshNI	GGYRCC	1 cut(s)	867
BsiHKAI	GWGCWC	2 cut(s)	931, 1235
BsiSI	CCGG	3 cut(s)	362, 833, 1201
BsiWI	CGTACG	1 cut(s)	941
BslI	CCNNNNNNNGG	2 cut(s)	809, 1041
BsmAI	GTCTC	1 cut(s)	930
BsnI	GGCC	1 cut(s)	292
Bso31I	GGTCTC	1 cut(s)	930
Bsp1286I	GDGCHC	2 cut(s)	931, 1235
Bsp1407I	TGTACA	3 cut(s)	110, 779, 889
Bsp143I	GATC	3 cut(s)	472, 883, 1174
BspACI	CCGC	2 cut(s)	69, 1111
BspANI	GGCC	1 cut(s)	292
BspCNI	CTCAG	2 cut(s)	682, 1081
BspFNI	CGCG	1 cut(s)	1111
BspLI	GGNNCC	2 cut(s)	831, 869
BspPI	GGATC	2 cut(s)	480, 1169
BspT107I	GGYRCC	1 cut(s)	867
BspTNI	GGTCTC	1 cut(s)	930
BsrDI	GCAATG	1 cut(s)	496
BsrGI	TGTACA	3 cut(s)	110, 779, 889
BsrI	ACTGG	4 cut(s)	663, 814, 1035, 1172
BssMI	GATC	3 cut(s)	472, 883, 1174
BssNI	GRCGYC	1 cut(s)	1198
BssSI	CACGAG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	624, 853
Bst4CI	ACNGT	4 cut(s)	115, 208, 245, 941
Bst6I	CTCTTC	1 cut(s)	742
BstACI	GRCGYC	1 cut(s)	1198
BstAUI	TGTACA	3 cut(s)	110, 779, 889
BstBAI	YACGTR	1 cut(s)	580
BstC8I	GCNNGC	2 cut(s)	354, 675
BstDEI	CTNAG	3 cut(s)	287, 669, 1089
BstF5I	GGATG	5 cut(s)	550, 598, 619, 682, 902
BstFNI	CGCG	1 cut(s)	1111
BstHHI	GCGC	1 cut(s)	1212
BstKTI	GATC	3 cut(s)	475, 886, 1177
BstMAI	GTCTC	1 cut(s)	930
BstMBI	GATC	3 cut(s)	472, 883, 1174
BstMWI	GCNNNNNNNGC	3 cut(s)	679, 1108, 1197
BstNI	CCWGG	2 cut(s)	624, 853
BstSCI	CCNGG	2 cut(s)	622, 851
BstSFI	CTRYAG	1 cut(s)	1149
BstSLI	GKGCMC	1 cut(s)	931
BstUI	CGCG	1 cut(s)	1111
BstV1I	GCAGC	2 cut(s)	97, 835
BstV2I	GAAGAC	1 cut(s)	1052
BstX2I	RGATCY	1 cut(s)	472
BstXI	CCANNNNNNTGG	3 cut(s)	18, 238, 449
BstYI	RGATCY	1 cut(s)	472
BsuRI	GGCC	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	1150
BtsCI	GGATG	5 cut(s)	550, 598, 619, 682, 902
BtsI	GCAGTG	1 cut(s)	775
BtsIMutI	CAGTG	2 cut(s)	775, 807
Cac8I	GCNNGC	2 cut(s)	354, 675
CfoI	GCGC	1 cut(s)	1212
CseI	GACGC	2 cut(s)	191, 1206
Csp6I	GTAC	5 cut(s)	111, 780, 861, 890, 942
CspCI	CAANNNNNGTGG	4 cut(s)	506, 541, 1042, 1077
CviAII	CATG	5 cut(s)	18, 804, 893, 910, 1162
CviQI	GTAC	5 cut(s)	111, 780, 861, 890, 942
DdeI	CTNAG	3 cut(s)	287, 669, 1089
DpnI	GATC	3 cut(s)	474, 885, 1176
DpnII	GATC	3 cut(s)	472, 883, 1174
DraI	TTTAAA	1 cut(s)	1183
DrdI	GACNNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	742
EarI	CTCTTC	1 cut(s)	742
Ecl136II	GAGCTC	1 cut(s)	1233
Eco147I	AGGCCT	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	1235
Eco31I	GGTCTC	1 cut(s)	930
Eco32I	GATATC	2 cut(s)	632, 666
Eco53kI	GAGCTC	1 cut(s)	1233
Eco57I	CTGAAG	1 cut(s)	1053
EcoICRI	GAGCTC	1 cut(s)	1233
EcoRII	CCWGG	2 cut(s)	622, 851
EcoRV	GATATC	2 cut(s)	632, 666
EcoT38I	GRGCYC	1 cut(s)	1235
FaeI	CATG	5 cut(s)	21, 807, 896, 913, 1165
FalI	AAGNNNNNCTT	2 cut(s)	31, 63
FatI	CATG	5 cut(s)	17, 803, 892, 909, 1161
FauI	CCCGC	1 cut(s)	1104
FblI	GTMKAC	1 cut(s)	1152
Fnu4HI	GCNGC	2 cut(s)	86, 849
FokI	GGATG	5 cut(s)	537, 605, 606, 669, 909
FriOI	GRGCYC	1 cut(s)	1235
Fsp4HI	GCNGC	2 cut(s)	86, 849
FspBI	CTAG	2 cut(s)	270, 726
GlaI	GCGC	1 cut(s)	1211
GluI	GCNGC	2 cut(s)	86, 849
GsuI	CTGGAG	1 cut(s)	680
HaeIII	GGCC	1 cut(s)	292
HapII	CCGG	3 cut(s)	362, 833, 1201
HgaI	GACGC	2 cut(s)	191, 1206
HhaI	GCGC	1 cut(s)	1212
Hin1I	GRCGYC	1 cut(s)	1198
Hin1II	CATG	5 cut(s)	21, 807, 896, 913, 1165
Hin6I	GCGC	1 cut(s)	1210
HinP1I	GCGC	1 cut(s)	1210
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HindIII	AAGCTT	1 cut(s)	159
HinfI	GANTC	1 cut(s)	193
HpaII	CCGG	3 cut(s)	362, 833, 1201
Hpy166II	GTNNAC	5 cut(s)	248, 303, 780, 929, 1153
Hpy188I	TCNGA	4 cut(s)	55, 277, 764, 795
Hpy188III	TCNNGA	7 cut(s)	34, 416, 476, 554, 635, 843, 905
Hpy8I	GTNNAC	5 cut(s)	248, 303, 780, 929, 1153
Hpy99I	CGWCG	1 cut(s)	949
HpyAV	CCTTC	2 cut(s)	815, 943
HpyCH4III	ACNGT	4 cut(s)	115, 208, 245, 941
HpyCH4IV	ACGT	2 cut(s)	579, 1060
HpyCH4V	TGCA	4 cut(s)	682, 807, 929, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	679, 1108, 1197
HpyF3I	CTNAG	3 cut(s)	287, 669, 1089
HpySE526I	ACGT	2 cut(s)	579, 1060
Hsp92I	GRCGYC	1 cut(s)	1198
Hsp92II	CATG	5 cut(s)	21, 807, 896, 913, 1165
HspAI	GCGC	1 cut(s)	1210
Kzo9I	GATC	3 cut(s)	472, 883, 1174
LmnI	GCTCC	1 cut(s)	835
Lsp1109I	GCAGC	2 cut(s)	97, 835
LweI	GCATC	2 cut(s)	382, 691
MaeI	CTAG	2 cut(s)	270, 726
MaeII	ACGT	2 cut(s)	579, 1060
MaeIII	GTNAC	2 cut(s)	223, 344
MalI	GATC	3 cut(s)	474, 885, 1176
MboI	GATC	3 cut(s)	472, 883, 1174
MboII	GAAGA	7 cut(s)	88, 404, 608, 639, 759, 1057, 1117
MflI	RGATCY	1 cut(s)	472
MhlI	GDGCHC	2 cut(s)	931, 1235
MluCI	AATT	5 cut(s)	613, 639, 688, 711, 717
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	5 cut(s)	53, 261, 758, 1092, 1150
MroXI	GAANNNNTTC	2 cut(s)	408, 1030
MseI	TTAA	4 cut(s)	320, 372, 1182, 1237
MslI	CAYNNNNRTG	3 cut(s)	22, 447, 802
MspA1I	CMGCKG	1 cut(s)	88
MspI	CCGG	3 cut(s)	362, 833, 1201
MspR9I	CCNGG	2 cut(s)	624, 853
MvaI	CCWGG	2 cut(s)	624, 853
MvnI	CGCG	1 cut(s)	1111
MwoI	GCNNNNNNNGC	3 cut(s)	679, 1108, 1197
NdeII	GATC	3 cut(s)	472, 883, 1174
NlaIII	CATG	5 cut(s)	21, 807, 896, 913, 1165
NlaIV	GGNNCC	2 cut(s)	831, 869
NmuCI	GTSAC	1 cut(s)	223
PceI	AGGCCT	1 cut(s)	292
PdmI	GAANNNNTTC	2 cut(s)	408, 1030
PfeI	GAWTC	1 cut(s)	193
Pfl23II	CGTACG	1 cut(s)	941
PflMI	CCANNNNNTGG	1 cut(s)	809
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	2 cut(s)	87, 850
Ppu21I	YACGTR	1 cut(s)	580
Psp124BI	GAGCTC	1 cut(s)	1235
Psp6I	CCWGG	2 cut(s)	622, 851
PspGI	CCWGG	2 cut(s)	622, 851
PspLI	CGTACG	1 cut(s)	941
PspN4I	GGNNCC	2 cut(s)	831, 869
PsuI	RGATCY	1 cut(s)	472
PvuII	CAGCTG	1 cut(s)	88
RsaI	GTAC	5 cut(s)	112, 781, 862, 891, 943
RsaNI	GTAC	5 cut(s)	111, 780, 861, 890, 942
RseI	CAYNNNNRTG	3 cut(s)	22, 447, 802
SacI	GAGCTC	1 cut(s)	1235
SaqAI	TTAA	4 cut(s)	320, 372, 1182, 1237
SatI	GCNGC	2 cut(s)	86, 849
Sau3AI	GATC	3 cut(s)	472, 883, 1174
ScrFI	CCNGG	2 cut(s)	624, 853
SduI	GDGCHC	2 cut(s)	931, 1235
SfaNI	GCATC	2 cut(s)	382, 691
SfcI	CTRYAG	1 cut(s)	1149
SmiMI	CAYNNNNRTG	3 cut(s)	22, 447, 802
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	5 cut(s)	613, 639, 688, 711, 717
SseBI	AGGCCT	1 cut(s)	292
SsiI	CCGC	2 cut(s)	69, 1111
SspMI	CTAG	2 cut(s)	270, 726
SstI	GAGCTC	1 cut(s)	1235
StuI	AGGCCT	1 cut(s)	292
StyD4I	CCNGG	2 cut(s)	622, 851
TaaI	ACNGT	4 cut(s)	115, 208, 245, 941
TaiI	ACGT	2 cut(s)	582, 1063
TaqI	TCGA	1 cut(s)	327
TasI	AATT	5 cut(s)	613, 639, 688, 711, 717
TatI	WGTACW	4 cut(s)	110, 779, 860, 889
TfiI	GAWTC	1 cut(s)	193
Tru1I	TTAA	4 cut(s)	320, 372, 1182, 1237
Tru9I	TTAA	4 cut(s)	320, 372, 1182, 1237
TscAI	CASTG	2 cut(s)	775, 814
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	85, 848
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	8 cut(s)	17, 95, 115, 608, 609, 926, 971, 1178
TspRI	CASTG	2 cut(s)	775, 814
Van91I	CCANNNNNTGG	1 cut(s)	809
VneI	GTGCAC	1 cut(s)	927
XapI	RAATTY	2 cut(s)	613, 688
XmiI	GTMKAC	1 cut(s)	1152
XmnI	GAANNNNTTC	2 cut(s)	408, 1030
XspI	CTAG	2 cut(s)	270, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.