Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0001643

Physical Location & Seq

Genomic Coordinates Forward (+)

90196425 .. 90201504

Gene Structure 5080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00069200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGAAGACACCAACCTCTTGGATATGGGTGTTCAAGAAGAAGAACAGCTTCTCTGATGGGGGAAAAAGCGGAGGATTAAAAATGAAGCAGGTGTCGTTTATGGGAGTTGTGTGTACAGTAATGTTATTCATCGTGTATAGAACCACCAATTACCAATATCAGGCTTATAAGGAGACAGAGATGGAAGAAAGAATGCATCCCTTTAATCAGGAAATTCTTTTGAGTTCCAGAAAGTTGGACGGTTTACCTCGTGGCATAATACAAGCTAGGTCGGATTTAGAGCTGAGGCCTTTATGGCTGACTAGTTCAAAGTTAACGGTTGATTATAGCAATCGCAATTTACTGGCTATTGCAGCTGGTATTAAGCAGAAACATAGTGTTGATGATATTGTGCAAAAGTTTCTTCCAGAAAACTTTACGATTATACTATTCCATTATGATGGGAATGTTAAAGGGTGGTGGTTTGCAAAACGATTTCTACATCCAGATGTTGTGTCCATTTATGATTACATATTCCTTTGGGATGAAGATTTGGGGGTTGAGGATTTTAACCCAGCAAGGTACCTTGAAATTGTAAGAGAAGCAGGACTGGAGATATCTCAGCCAGCTTTGCATCCAAATTCATCTGATATACATCATAGAATTACAGTTCGTGCTAAAAAAAGAAGTTCCATAGAAGAGTTTATGATAGTAGAGGCAGTGTTTGTGGAAGGTATGGCTCCGGTCTTTTCAAGATCTGCCTGGCATTGCACTTGGCATCTTATACAGAATGATCTTGTACATGGATGGGGTCTGGACATGAAGCTTGGGTATTGTGCACAGGGGGACCGTACAAAGAATGTTGGAGTTGTTGATAGTGAATTTATTTTTCATAAGGGTATACAAAGTTTGGGAGGGGGTGACTCACCCGAAAAAAAGGTTTCCAATTCTAAGAAGAAACGTATTGTTTCAAATCACGATGGAAGAACCGAGATTCGGAGGCAATCAACGCGGGAGTTTACAATGTTCAAAGAACGGTGGAATCGTGCTGTAGAAGAGGACAAGAAGTGGATTGATCCATTCAGAACTGACCAAAGACGGAGAAAGAAACAGCGGTTACGCAACAACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF707

Protein Analysis

370

Amino Acids

43.25

Weight (kDa)

9.5

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF707	PF05212	78 - 153	1.4e-20	Protein of unknown function (DUF707)
DUF707	PF05212	153 - 345	4.3e-78	Protein of unknown function (DUF707)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G11170 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240 AT1G61240
fragaria_vesca	FvH4_3g04460 FvH4_3g04460 FvH4_3g04460 FvH4_3g04460 FvH4_3g04460
malus_domestica	MD05G1323000.v1.1 MD10G1300800.v1.1
prunus_persica	Prupe.4G039600_v2.0.a1 Prupe.4G039600_v2.0.a1
pyrus_communis	pycom05g29730 pycom10g25370
rosa_chinensis	RchiOBHm_Chr3g0480871 RchiOBHm_Chr5g0006851
rosa_laevigata	RLG00000031434
rosa_multiflora	Rmu_sc0001044.1_g000034 Rmu_sc0002784.1_g000052 Rmu_sc0005956.1_g000005 Rmu_sc0012775.1_g000005
rosa_roxburghii	Rroxscaffold_1G00069200
rosa_rugosa	Rorug01G0182100 Rorug04G0425000 Rorug04G0425100.1
rosa_samantha	Rh5AG052700 Rh5AG052800 Rh5AG071100 Rh5AG371700 Rh5AG433400 Rh5BG051700 Rh5CG060300 Rh5DG050900
rosa_wichuraiana	Rw4G022980 Rw5G005190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	1 cut(s)	79
Acc65I	GGTACC	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	561
AccI	GTMKAC	1 cut(s)	880
AccII	CGCG	1 cut(s)	991
AciI	CCGC	3 cut(s)	69, 991, 1093
AclWI	GGATC	1 cut(s)	1049
AcsI	RAATTY	3 cut(s)	213, 619, 860
AfaI	GTAC	4 cut(s)	115, 563, 780, 832
AfiI	CCNNNNNNNGG	2 cut(s)	160, 975
AgsI	TTSAA	6 cut(s)	34, 309, 569, 732, 951, 1009
AhlI	ACTAGT	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	740
AluBI	AGCT	6 cut(s)	48, 266, 283, 356, 608, 805
AluI	AGCT	6 cut(s)	48, 266, 283, 356, 608, 805
Alw21I	GWGCWC	1 cut(s)	820
Alw26I	GTCTC	1 cut(s)	167
Alw44I	GTGCAC	1 cut(s)	816
AlwI	GGATC	1 cut(s)	1049
AoxI	GGCC	1 cut(s)	287
ApaLI	GTGCAC	1 cut(s)	816
ApeKI	GCWGC	1 cut(s)	353
ApoI	RAATTY	3 cut(s)	213, 619, 860
Asp700I	GAANNNNTTC	1 cut(s)	47
Asp718I	GGTACC	1 cut(s)	561
AspS9I	GGNCC	1 cut(s)	826
AsuHPI	GGTGA	2 cut(s)	897, 911
AvaII	GGWCC	1 cut(s)	826
BaeGI	GKGCMC	1 cut(s)	820
BanI	GGYRCC	1 cut(s)	561
BauI	CACGAG	1 cut(s)	249
BbsI	GAAGAC	1 cut(s)	11
Bbv12I	GWGCWC	1 cut(s)	820
BbvCI	CCTCAGC	1 cut(s)	284
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	5 cut(s)	50, 175, 434, 780, 953
BciT130I	CCWGG	1 cut(s)	742
BcoDI	GTCTC	1 cut(s)	167
BcuI	ACTAGT	1 cut(s)	302
BfaI	CTAG	2 cut(s)	267, 303
BfmI	CTRYAG	1 cut(s)	1029
BfuAI	ACCTGC	1 cut(s)	79
BglI	GCCNNNNNGGC	1 cut(s)	295
BglII	AGATCT	1 cut(s)	734
BisI	GCNGC	1 cut(s)	354
BlsI	GCNGC	1 cut(s)	355
Bme1390I	CCNGG	1 cut(s)	742
Bme18I	GGWCC	1 cut(s)	826
BmgT120I	GGNCC	1 cut(s)	826
BmiI	GGNNCC	3 cut(s)	563, 720, 827
BmrFI	CCNGG	1 cut(s)	742
BmsI	GCATC	3 cut(s)	205, 622, 766
BpiI	GAAGAC	1 cut(s)	11
BpmI	CTGGAG	1 cut(s)	611
Bpu10I	CCTNAGC	1 cut(s)	284
BsaBI	GATNNNNATC	1 cut(s)	633
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 975
Bse1I	ACTGG	2 cut(s)	348, 594
Bse3DI	GCAATG	1 cut(s)	745
Bse8I	GATNNNNATC	1 cut(s)	633
BseBI	CCWGG	1 cut(s)	742
BseGI	GGATG	5 cut(s)	196, 481, 529, 613, 791
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	2 cut(s)	160, 975
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	2 cut(s)	275, 614
BseNI	ACTGG	2 cut(s)	348, 594
BseSI	GKGCMC	1 cut(s)	820
BseXI	GCAGC	1 cut(s)	365
BseYI	CCCAGC	1 cut(s)	553
Bsh1236I	CGCG	1 cut(s)	991
BshFI	GGCC	1 cut(s)	289
BshNI	GGYRCC	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	820
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	1 cut(s)	839
BslI	CCNNNNNNNGG	2 cut(s)	160, 975
BsmAI	GTCTC	1 cut(s)	167
BsmFI	GGGAC	1 cut(s)	839
BsmI	GAATGC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	289
Bsp1286I	GDGCHC	1 cut(s)	820
Bsp1407I	TGTACA	2 cut(s)	113, 778
Bsp143I	GATC	3 cut(s)	734, 772, 1054
BspACI	CCGC	3 cut(s)	69, 991, 1093
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	2 cut(s)	276, 613
BspFNI	CGCG	1 cut(s)	991
BspLI	GGNNCC	3 cut(s)	563, 720, 827
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	1049
BspT107I	GGYRCC	1 cut(s)	561
BsrDI	GCAATG	1 cut(s)	745
BsrGI	TGTACA	2 cut(s)	113, 778
BsrI	ACTGG	2 cut(s)	348, 594
BssMI	GATC	3 cut(s)	734, 772, 1054
BssNAI	GTATAC	1 cut(s)	881
BssSI	CACGAG	1 cut(s)	249
Bst1107I	GTATAC	1 cut(s)	881
Bst2BI	CACGAG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	742
Bst4CI	ACNGT	6 cut(s)	118, 242, 319, 649, 830, 1017
Bst6I	CTCTTC	2 cut(s)	672, 1029
BstAUI	TGTACA	2 cut(s)	113, 778
BstC8I	GCNNGC	1 cut(s)	606
BstDEI	CTNAG	3 cut(s)	284, 600, 930
BstF5I	GGATG	5 cut(s)	196, 481, 529, 613, 791
BstFNI	CGCG	1 cut(s)	991
BstKTI	GATC	3 cut(s)	737, 775, 1057
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	3 cut(s)	734, 772, 1054
BstMWI	GCNNNNNNNGC	4 cut(s)	295, 353, 610, 988
BstNI	CCWGG	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	740
BstSFI	CTRYAG	1 cut(s)	1029
BstSLI	GKGCMC	1 cut(s)	820
BstUI	CGCG	1 cut(s)	991
BstV1I	GCAGC	1 cut(s)	365
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	734
BstXI	CCANNNNNNTGG	3 cut(s)	18, 235, 440
BstYI	RGATCY	1 cut(s)	734
BstZ17I	GTATAC	1 cut(s)	881
BsuRI	GGCC	1 cut(s)	289
BtsCI	GGATG	5 cut(s)	196, 481, 529, 613, 791
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	1 cut(s)	705
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	606
Cfr13I	GGNCC	1 cut(s)	826
Csp6I	GTAC	4 cut(s)	114, 562, 779, 831
CviAII	CATG	2 cut(s)	782, 799
CviQI	GTAC	4 cut(s)	114, 562, 779, 831
DdeI	CTNAG	3 cut(s)	284, 600, 930
DpnI	GATC	3 cut(s)	736, 774, 1056
DpnII	GATC	3 cut(s)	734, 772, 1054
Eam1104I	CTCTTC	2 cut(s)	672, 1029
EarI	CTCTTC	2 cut(s)	672, 1029
Eco147I	AGGCCT	1 cut(s)	289
Eco32I	GATATC	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	826
EcoRII	CCWGG	1 cut(s)	740
EcoRV	GATATC	1 cut(s)	597
EcoT22I	ATGCAT	1 cut(s)	198
FaeI	CATG	2 cut(s)	785, 802
FalI	AAGNNNNNCTT	2 cut(s)	32, 64
FaqI	GGGAC	1 cut(s)	839
FatI	CATG	2 cut(s)	781, 798
FauI	CCCGC	1 cut(s)	984
FblI	GTMKAC	1 cut(s)	880
Fnu4HI	GCNGC	1 cut(s)	354
FokI	GGATG	5 cut(s)	183, 468, 536, 600, 798
Fsp4HI	GCNGC	1 cut(s)	354
FspBI	CTAG	2 cut(s)	267, 303
GluI	GCNGC	1 cut(s)	354
GsaI	CCCAGC	1 cut(s)	557
GsuI	CTGGAG	1 cut(s)	611
HaeIII	GGCC	1 cut(s)	289
HapII	CCGG	1 cut(s)	722
Hin1II	CATG	2 cut(s)	785, 802
HincII	GTYRAC	1 cut(s)	315
HindII	GTYRAC	1 cut(s)	315
HindIII	AAGCTT	1 cut(s)	803
HinfI	GANTC	3 cut(s)	902, 973, 1021
HpaI	GTTAAC	1 cut(s)	315
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	2 cut(s)	897, 911
Hpy166II	GTNNAC	6 cut(s)	114, 245, 315, 818, 881, 999
Hpy188I	TCNGA	5 cut(s)	55, 274, 628, 978, 1064
Hpy188III	TCNNGA	8 cut(s)	34, 209, 228, 407, 485, 732, 794, 956
Hpy8I	GTNNAC	6 cut(s)	114, 245, 315, 818, 881, 999
HpyAV	CCTTC	1 cut(s)	704
HpyCH4III	ACNGT	6 cut(s)	118, 242, 319, 649, 830, 1017
HpyCH4IV	ACGT	1 cut(s)	940
HpyCH4V	TGCA	7 cut(s)	196, 353, 394, 467, 613, 750, 818
HpyF10VI	GCNNNNNNNGC	4 cut(s)	295, 353, 610, 988
HpyF3I	CTNAG	3 cut(s)	284, 600, 930
HpySE526I	ACGT	1 cut(s)	940
Hsp92II	CATG	2 cut(s)	785, 802
KpnI	GGTACC	1 cut(s)	565
KspAI	GTTAAC	1 cut(s)	315
Kzo9I	GATC	3 cut(s)	734, 772, 1054
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	1 cut(s)	365
LweI	GCATC	3 cut(s)	205, 622, 766
MaeI	CTAG	2 cut(s)	267, 303
MaeII	ACGT	1 cut(s)	940
MaeIII	GTNAC	2 cut(s)	899, 1095
MalI	GATC	3 cut(s)	736, 774, 1056
MboI	GATC	3 cut(s)	734, 772, 1054
MflI	RGATCY	1 cut(s)	734
MhlI	GDGCHC	1 cut(s)	820
MluCI	AATT	8 cut(s)	148, 213, 337, 570, 619, 642, 860, 925
MlyI	GAGTC	1 cut(s)	896
MmeI	TCCRAC	3 cut(s)	216, 252, 823
MnlI	CCTC	9 cut(s)	25, 65, 258, 279, 535, 688, 887, 972, 1030
Mph1103I	ATGCAT	1 cut(s)	198
MroXI	GAANNNNTTC	1 cut(s)	47
MseI	TTAA	6 cut(s)	77, 204, 314, 363, 450, 549
MslI	CAYNNNNRTG	2 cut(s)	438, 486
MspA1I	CMGCKG	2 cut(s)	356, 1093
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	1 cut(s)	742
Mva1269I	GAATGC	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	742
MvnI	CGCG	1 cut(s)	991
MwoI	GCNNNNNNNGC	4 cut(s)	295, 353, 610, 988
NdeII	GATC	3 cut(s)	734, 772, 1054
NlaIII	CATG	2 cut(s)	785, 802
NlaIV	GGNNCC	3 cut(s)	563, 720, 827
NmuCI	GTSAC	1 cut(s)	899
NsiI	ATGCAT	1 cut(s)	198
PaqCI	CACCTGC	1 cut(s)	79
PceI	AGGCCT	1 cut(s)	289
PcsI	WCGNNNNNNNCGW	1 cut(s)	1021
PctI	GAATGC	1 cut(s)	198
PdmI	GAANNNNTTC	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	973, 1021
PkrI	GCNGC	1 cut(s)	355
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
PsiI	TTATAA	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	740
PspFI	CCCAGC	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	740
PspN4I	GGNNCC	3 cut(s)	563, 720, 827
PspPI	GGNCC	1 cut(s)	826
PsuI	RGATCY	1 cut(s)	734
PvuII	CAGCTG	1 cut(s)	356
RsaI	GTAC	4 cut(s)	115, 563, 780, 832
RsaNI	GTAC	4 cut(s)	114, 562, 779, 831
RseI	CAYNNNNRTG	2 cut(s)	438, 486
SaqAI	TTAA	6 cut(s)	77, 204, 314, 363, 450, 549
SatI	GCNGC	1 cut(s)	354
Sau3AI	GATC	3 cut(s)	734, 772, 1054
Sau96I	GGNCC	1 cut(s)	826
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	1 cut(s)	742
SduI	GDGCHC	1 cut(s)	820
SfaNI	GCATC	3 cut(s)	205, 622, 766
SfcI	CTRYAG	1 cut(s)	1029
SinI	GGWCC	1 cut(s)	826
SmiMI	CAYNNNNRTG	2 cut(s)	438, 486
SpeI	ACTAGT	1 cut(s)	302
Sse9I	AATT	8 cut(s)	148, 213, 337, 570, 619, 642, 860, 925
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	3 cut(s)	69, 991, 1093
SspMI	CTAG	2 cut(s)	267, 303
StuI	AGGCCT	1 cut(s)	289
StyD4I	CCNGG	1 cut(s)	740
TaaI	ACNGT	6 cut(s)	118, 242, 319, 649, 830, 1017
TaiI	ACGT	1 cut(s)	943
TasI	AATT	8 cut(s)	148, 213, 337, 570, 619, 642, 860, 925
TatI	WGTACW	2 cut(s)	113, 778
TfiI	GAWTC	2 cut(s)	973, 1021
Tru1I	TTAA	6 cut(s)	77, 204, 314, 363, 450, 549
Tru9I	TTAA	6 cut(s)	77, 204, 314, 363, 450, 549
TscAI	CASTG	1 cut(s)	705
TseFI	GTSAC	1 cut(s)	899
TseI	GCWGC	1 cut(s)	353
Tsp45I	GTSAC	1 cut(s)	899
TspDTI	ATGAA	7 cut(s)	17, 98, 118, 540, 612, 815, 860
TspGWI	ACGGA	1 cut(s)	1093
TspRI	CASTG	1 cut(s)	705
VneI	GTGCAC	1 cut(s)	816
VpaK11BI	GGWCC	1 cut(s)	826
XapI	RAATTY	3 cut(s)	213, 619, 860
XmiI	GTMKAC	1 cut(s)	880
XmnI	GAANNNNTTC	1 cut(s)	47
XspI	CTAG	2 cut(s)	267, 303
Zsp2I	ATGCAT	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.