Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Forward (+)

3806822 .. 3808940

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGACCCAATTGCTTCGGTGTTGGAGAAAGTGAAGAGCTTTACGAAATCGAGCCAGGATTTAGTCTCCCGCCATTTCGGCTTCCATGAGAATCCTTCTCGCCTGAATCCGATTGATATCTTGAAGCGATTACAAAGAGAAACATTCTCGGATTTGATGAAACTTAGAGAAAGACAAGAGAAAGTAGAGCGGATCATTTCCTCGCAGAAATTATCGAAAGGAGGTCCCTTTCAAGAGACTAGCACTCATGTGAGAGGTGAAGTTGATGTGCTTGGAGCTATATTGCTGATGGGAAACACTGACGAGGAAAGTTTCAATGGACTCAACAAAGAAGGAGTGAGACCGGGATTGCTTTCAAGGTTTGTGTTTGAAACGAGTCTTAGGGAGACAGATAGGCTTGTGGCTGAGCTTGTTGCTGGATACAATGGGGCAGGAAGTCACAGGGATTTTTTAGGAGGAGAGTTGTCTTTAGCCAAAGTCTTCTACAAGGCAGATATTAATGATTGGTTCTCTGCTATTGCTATTCCTGTTGGCGCGCATTTCAGAGACATTGAGGCTTCTACTGTGTCTTCTTACCAGGGAATGAGTCTCACAGAAGTTTCTGAACTTGGACCACCTCTTTTAAGCCAACATAATGGGAGCGCCATAGGGTTAACATTCAGAAAGTCAAATATCACAGCTTCACTGGCTCAGTCTATGTCAAACGTTGAAGTTGAACAGGGTTTGACTGCACCGAATCGTTGTTTCAGAACATTTGGGCAAGTAACCTGCCACATTCTCAGAAGTTTAAAGCTATCTCTATTGGGCTGTCACCAAGTTTTAACATCATCTAGCAATCTCCATTCTGTTGGAGCCATTACAGTTCCAGTAAGTTTCCTAAGGCGCCATACTGCTACGGAGCCTGAACCATCAGCACCGCCTCTGGAGATGAGTAGAAACATGAATCATGTGTCGTCCAGTTCCATTGCTTTGAAGTTAGACTCTCTAATGGACGAGTCTACAAAACTTGGGGGATGGATTGAAATTCAGAACTCAAGAGAAAAGCAAGTGAAATGGTCAGTGTCTATTACAGACAACCCAGAGGATGAAGTGGGCTGGGGCATGAGCGTTGGGGGAGTTGTTGATGGTTCAAGAAATCATGATCAGTTTCAGGTGGAATCATATCTGAAATTCAACATAGGCGATAGGTTTAGATTAAGTCCATGTCTTGTTTATCACACAAACAGTGACGGAAGAACCATAGGTCTTATGCTAAAGTCTCACTGGTCGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

424

Amino Acids

46.89

Weight (kDa)

6.55

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	776
AccB1I	GGYRCC	1 cut(s)	882
AccBSI	CCGCTC	1 cut(s)	190
AccI	GTMKAC	1 cut(s)	998
AccII	CGCG	1 cut(s)	536
AciI	CCGC	3 cut(s)	70, 190, 917
AclI	AACGTT	1 cut(s)	705
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	2 cut(s)	1023, 1169
AcyI	GRCGYC	1 cut(s)	883
AjnI	CCWGG	2 cut(s)	54, 576
AleI	CACNNNNGTG	1 cut(s)	248
AluBI	AGCT	5 cut(s)	39, 278, 409, 680, 793
AluI	AGCT	5 cut(s)	39, 278, 409, 680, 793
Alw26I	GTCTC	7 cut(s)	70, 230, 334, 380, 540, 593, 1263
AlwI	GGATC	1 cut(s)	200
ApoI	RAATTY	2 cut(s)	1023, 1169
AseI	ATTAAT	1 cut(s)	498
AspLEI	GCGC	4 cut(s)	536, 538, 644, 885
AspS9I	GGNCC	3 cut(s)	4, 224, 611
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	269, 803
AvaII	GGWCC	3 cut(s)	4, 224, 611
AxyI	CCTNAGG	1 cut(s)	878
BanI	GGYRCC	1 cut(s)	882
BbsI	GAAGAC	2 cut(s)	472, 561
BccI	CCATC	4 cut(s)	283, 916, 1008, 1118
BciT130I	CCWGG	2 cut(s)	56, 578
BciVI	GTATCC	1 cut(s)	413
BclI	TGATCA	1 cut(s)	1141
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	7 cut(s)	70, 230, 334, 380, 540, 593, 1263
BfaI	CTAG	2 cut(s)	240, 831
BfoI	RGCGCY	2 cut(s)	645, 886
BfuAI	ACCTGC	1 cut(s)	776
BfuI	GTATCC	1 cut(s)	413
BglI	GCCNNNNNGGC	1 cut(s)	78
BlpI	GCTNAGC	1 cut(s)	405
Bme1390I	CCNGG	3 cut(s)	56, 345, 578
Bme18I	GGWCC	3 cut(s)	4, 224, 611
BmgT120I	GGNCC	3 cut(s)	4, 224, 611
BmiI	GGNNCC	5 cut(s)	6, 226, 853, 884, 900
BmrFI	CCNGG	3 cut(s)	56, 345, 578
BpiI	GAAGAC	2 cut(s)	472, 561
BpmI	CTGGAG	1 cut(s)	944
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuEI	CTTGAG	1 cut(s)	1018
BpuMI	CCSGG	1 cut(s)	345
BsaBI	GATNNNNATC	1 cut(s)	116
BsaHI	GRCGYC	1 cut(s)	883
BsaI	GGTCTC	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	577
Bse1I	ACTGG	4 cut(s)	690, 866, 957, 1268
Bse21I	CCTNAGG	1 cut(s)	878
Bse3DI	GCAATG	1 cut(s)	963
Bse8I	GATNNNNATC	1 cut(s)	116
BseBI	CCWGG	2 cut(s)	56, 578
BseDI	CCNNGG	1 cut(s)	577
BseGI	GGATG	2 cut(s)	1019, 1090
BseJI	GATNNNNATC	1 cut(s)	116
BseMI	GCAATG	1 cut(s)	963
BseMII	CTCAG	3 cut(s)	396, 704, 793
BseNI	ACTGG	4 cut(s)	690, 866, 957, 1268
BsePI	GCGCGC	1 cut(s)	534
BseRI	GAGGAG	1 cut(s)	471
BseYI	CCCAGC	1 cut(s)	1095
BsgI	GTGCAG	1 cut(s)	714
Bsh1236I	CGCG	1 cut(s)	536
BshNI	GGYRCC	1 cut(s)	882
BsiSI	CCGG	1 cut(s)	344
BslFI	GGGAC	1 cut(s)	210
BsmAI	GTCTC	7 cut(s)	70, 230, 334, 380, 540, 593, 1263
BsmFI	GGGAC	1 cut(s)	210
Bso31I	GGTCTC	1 cut(s)	334
Bsp143I	GATC	2 cut(s)	192, 1141
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	3 cut(s)	70, 190, 917
BspCNI	CTCAG	3 cut(s)	397, 703, 792
BspFNI	CGCG	1 cut(s)	536
BspHI	TCATGA	1 cut(s)	1138
BspLI	GGNNCC	5 cut(s)	6, 226, 853, 884, 900
BspMI	ACCTGC	1 cut(s)	776
BspPI	GGATC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	29
BspT107I	GGYRCC	1 cut(s)	882
BspTNI	GGTCTC	1 cut(s)	334
BsrBI	CCGCTC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	963
BsrI	ACTGG	4 cut(s)	690, 866, 957, 1268
BssECI	CCNNGG	1 cut(s)	577
BssHII	GCGCGC	1 cut(s)	534
BssMI	GATC	2 cut(s)	192, 1141
BssNI	GRCGYC	1 cut(s)	883
Bst2UI	CCWGG	2 cut(s)	56, 578
Bst4CI	ACNGT	3 cut(s)	565, 862, 1226
Bst6I	CTCTTC	1 cut(s)	29
BstACI	GRCGYC	1 cut(s)	883
BstC8I	GCNNGC	1 cut(s)	536
BstDEI	CTNAG	6 cut(s)	164, 380, 405, 690, 779, 878
BstF5I	GGATG	2 cut(s)	1019, 1090
BstFNI	CGCG	1 cut(s)	536
BstH2I	RGCGCY	2 cut(s)	645, 886
BstHHI	GCGC	4 cut(s)	536, 538, 644, 885
BstKTI	GATC	2 cut(s)	195, 1144
BstMAI	GTCTC	7 cut(s)	70, 230, 334, 380, 540, 593, 1263
BstMBI	GATC	2 cut(s)	192, 1141
BstMWI	GCNNNNNNNGC	2 cut(s)	78, 686
BstNI	CCWGG	2 cut(s)	56, 578
BstSCI	CCNGG	3 cut(s)	54, 343, 576
BstUI	CGCG	1 cut(s)	536
BstV2I	GAAGAC	2 cut(s)	472, 561
BstXI	CCANNNNNNTGG	2 cut(s)	635, 848
Bsu36I	CCTNAGG	1 cut(s)	878
BsuI	GTATCC	1 cut(s)	413
BtsCI	GGATG	2 cut(s)	1019, 1090
BtsIMutI	CAGTG	5 cut(s)	297, 683, 1065, 1231, 1261
BveI	ACCTGC	1 cut(s)	776
Cac8I	GCNNGC	1 cut(s)	536
CciI	TCATGA	1 cut(s)	1138
CfoI	GCGC	4 cut(s)	536, 538, 644, 885
Cfr13I	GGNCC	3 cut(s)	4, 224, 611
CviAII	CATG	7 cut(s)	86, 248, 940, 947, 1102, 1139, 1203
DdeI	CTNAG	6 cut(s)	164, 380, 405, 690, 779, 878
DinI	GGCGCC	1 cut(s)	884
DpnI	GATC	2 cut(s)	194, 1143
DpnII	GATC	2 cut(s)	192, 1141
DraI	TTTAAA	1 cut(s)	789
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco31I	GGTCTC	1 cut(s)	334
Eco32I	GATATC	1 cut(s)	118
Eco47I	GGWCC	3 cut(s)	4, 224, 611
Eco81I	CCTNAGG	1 cut(s)	878
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	2 cut(s)	54, 576
EcoRV	GATATC	1 cut(s)	118
EgeI	GGCGCC	1 cut(s)	884
EheI	GGCGCC	1 cut(s)	884
FaeI	CATG	7 cut(s)	89, 251, 943, 950, 1105, 1142, 1206
FaqI	GGGAC	1 cut(s)	210
FatI	CATG	7 cut(s)	85, 247, 939, 946, 1101, 1138, 1202
FauI	CCCGC	1 cut(s)	77
FbaI	TGATCA	1 cut(s)	1141
FblI	GTMKAC	1 cut(s)	998
FokI	GGATG	2 cut(s)	1026, 1097
FspBI	CTAG	2 cut(s)	240, 831
GlaI	GCGC	4 cut(s)	535, 537, 643, 884
GsaI	CCCAGC	1 cut(s)	1099
GsuI	CTGGAG	1 cut(s)	944
HaeII	RGCGCY	2 cut(s)	645, 886
HapII	CCGG	1 cut(s)	344
HhaI	GCGC	4 cut(s)	536, 538, 644, 885
Hin1I	GRCGYC	1 cut(s)	883
Hin1II	CATG	7 cut(s)	89, 251, 943, 950, 1105, 1142, 1206
Hin6I	GCGC	4 cut(s)	534, 536, 642, 883
HinP1I	GCGC	4 cut(s)	534, 536, 642, 883
HincII	GTYRAC	1 cut(s)	654
HindII	GTYRAC	1 cut(s)	654
HpaI	GTTAAC	1 cut(s)	654
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	269, 803
Hpy166II	GTNNAC	2 cut(s)	654, 999
Hpy188I	TCNGA	9 cut(s)	111, 151, 545, 604, 662, 749, 782, 1029, 1167
Hpy188III	TCNNGA	6 cut(s)	121, 233, 923, 1035, 1131, 1139
Hpy8I	GTNNAC	2 cut(s)	654, 999
HpyAV	CCTTC	2 cut(s)	105, 326
HpyCH4III	ACNGT	3 cut(s)	565, 862, 1226
HpyCH4IV	ACGT	1 cut(s)	705
HpyCH4V	TGCA	1 cut(s)	731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	78, 686
HpyF3I	CTNAG	6 cut(s)	164, 380, 405, 690, 779, 878
HpySE526I	ACGT	1 cut(s)	705
Hsp92I	GRCGYC	1 cut(s)	883
Hsp92II	CATG	7 cut(s)	89, 251, 943, 950, 1105, 1142, 1206
HspAI	GCGC	4 cut(s)	534, 536, 642, 883
KasI	GGCGCC	1 cut(s)	882
Ksp22I	TGATCA	1 cut(s)	1141
KspAI	GTTAAC	1 cut(s)	654
Kzo9I	GATC	2 cut(s)	192, 1141
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	4 cut(s)	275, 639, 851, 898
MaeI	CTAG	2 cut(s)	240, 831
MaeII	ACGT	1 cut(s)	705
MaeIII	GTNAC	4 cut(s)	437, 763, 809, 1226
MalI	GATC	2 cut(s)	194, 1143
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	2 cut(s)	192, 1141
MboII	GAAGA	4 cut(s)	46, 472, 561, 1245
MfeI	CAATTG	1 cut(s)	9
MluCI	AATT	4 cut(s)	9, 209, 1023, 1169
Mly113I	GGCGCC	1 cut(s)	883
MlyI	GAGTC	5 cut(s)	315, 385, 595, 974, 1004
MmeI	TCCRAC	1 cut(s)	829
MnlI	CCTC	9 cut(s)	211, 215, 248, 298, 449, 547, 627, 930, 1075
MseI	TTAA	6 cut(s)	498, 623, 653, 788, 821, 1196
MslI	CAYNNNNRTG	1 cut(s)	248
MspI	CCGG	1 cut(s)	344
MspR9I	CCNGG	3 cut(s)	56, 345, 578
MunI	CAATTG	1 cut(s)	9
MvaI	CCWGG	2 cut(s)	56, 578
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	2 cut(s)	78, 686
NarI	GGCGCC	1 cut(s)	883
NciI	CCSGG	1 cut(s)	345
NdeII	GATC	2 cut(s)	192, 1141
NlaIII	CATG	7 cut(s)	89, 251, 943, 950, 1105, 1142, 1206
NlaIV	GGNNCC	5 cut(s)	6, 226, 853, 884, 900
NmuCI	GTSAC	3 cut(s)	437, 809, 1226
OliI	CACNNNNGTG	1 cut(s)	248
PagI	TCATGA	1 cut(s)	1138
PauI	GCGCGC	1 cut(s)	534
PciSI	GCTCTTC	1 cut(s)	29
PfeI	GAWTC	5 cut(s)	91, 106, 736, 943, 1157
PleI	GAGTC	5 cut(s)	315, 384, 594, 974, 1003
PluTI	GGCGCC	1 cut(s)	886
PpsI	GAGTC	5 cut(s)	315, 384, 594, 974, 1003
PpuMI	RGGWCCY	1 cut(s)	224
PshBI	ATTAAT	1 cut(s)	498
Psp1406I	AACGTT	1 cut(s)	705
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	2 cut(s)	54, 576
PspFI	CCCAGC	1 cut(s)	1095
PspGI	CCWGG	2 cut(s)	54, 576
PspN4I	GGNNCC	5 cut(s)	6, 226, 853, 884, 900
PspPI	GGNCC	3 cut(s)	4, 224, 611
PspPPI	RGGWCCY	1 cut(s)	224
PteI	GCGCGC	1 cut(s)	534
RseI	CAYNNNNRTG	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	6 cut(s)	498, 623, 653, 788, 821, 1196
Sau3AI	GATC	2 cut(s)	192, 1141
Sau96I	GGNCC	3 cut(s)	4, 224, 611
SchI	GAGTC	5 cut(s)	315, 385, 595, 974, 1004
ScrFI	CCNGG	3 cut(s)	56, 345, 578
SfoI	GGCGCC	1 cut(s)	884
SinI	GGWCC	3 cut(s)	4, 224, 611
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	1 cut(s)	1033
SmoI	CTYRAG	1 cut(s)	1033
Sse9I	AATT	4 cut(s)	9, 209, 1023, 1169
SsiI	CCGC	3 cut(s)	70, 190, 917
SspDI	GGCGCC	1 cut(s)	882
SspMI	CTAG	2 cut(s)	240, 831
StyD4I	CCNGG	3 cut(s)	54, 343, 576
TaaI	ACNGT	3 cut(s)	565, 862, 1226
TaiI	ACGT	1 cut(s)	708
TaqI	TCGA	2 cut(s)	50, 215
TasI	AATT	4 cut(s)	9, 209, 1023, 1169
TfiI	GAWTC	5 cut(s)	91, 106, 736, 943, 1157
Tru1I	TTAA	6 cut(s)	498, 623, 653, 788, 821, 1196
Tru9I	TTAA	6 cut(s)	498, 623, 653, 788, 821, 1196
TscAI	CASTG	5 cut(s)	304, 690, 1065, 1231, 1268
TseFI	GTSAC	3 cut(s)	437, 809, 1226
Tsp45I	GTSAC	3 cut(s)	437, 809, 1226
TspDTI	ATGAA	3 cut(s)	173, 956, 1101
TspGWI	ACGGA	2 cut(s)	911, 1245
TspRI	CASTG	5 cut(s)	304, 690, 1065, 1231, 1268
VpaK11BI	GGWCC	3 cut(s)	4, 224, 611
VspI	ATTAAT	1 cut(s)	498
XapI	RAATTY	2 cut(s)	1023, 1169
XmiI	GTMKAC	1 cut(s)	998
XspI	CTAG	2 cut(s)	240, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.