Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Reverse (-)

78181718 .. 78183757

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G044530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGAGTCCATACAAGGTTTCACGAAATCGACCCAAGAGTTTTTCGACAACCTCATCCACCGCCGTGCAAATTGCCGGAATCCGATTGAAATACTGAAGCGATTGCAAAGAGAGACGTTTTCAGATTTGATGAGACTGAGGGACAGGCAAGACCAGGTTGAGAGAATGGTGTCCTTGTTTGGGCCTTCTAAAGGAAGCCCATTTCAAGGAGGCAACACCCCTTTAAAGGTAGAAGTTGATTTCTTGGGGGGTTTGTTATGGAAGCATAATGATGATGATGATGGGGGTCATCAATACCCTGATGCTCTTAGTAGAGCTGGGATTCGAACTGGGTTTGATTCTAGGTTGAGTATTGAAATATCTCCCTCACCGCATGATGCTCTTTTGACTGAGTTTGTGGCCGGTCAGAAGTACAGGAATGATGGTTTTGATGTTTCAGAATGTCAGGTTTCTCTAGCTAAAGTTTCTTATACGGCAAATGTGAGCAATTGGTTGTCCGCCATTGCAATTCCAGTGGGAGCTCGGTGCAGGGACTTCGCGGTTGTTACGAGTCCTTCCCATCAGGGAAAGGGCCTAACTGATCGATCATCATTTGGACCACCTCTTCTGAATGAGTATAATGGCAGTGCAATTGGCATAATGGTCAAAAATGCAAATGTGGTTGTTGCTTCATTGGCTCAGTCTGTTTCGGGACTGGGAGTGCCAGTAGGTTCTGGTAGAGTTGGGCACTGCTTGAGCACTTTTGGTCAAATTGTCTGCCAACTTCCCGGAAACACCAAACTCTCGCTTCTTGGTCTTCACCAAATGCCTAAATCGTCAGGTGAACATGTCAATCACGGAGCTCTTTCCGTCCCATCAGGCAGTTTGGAACACCATACGTCTCCTCCAACAACGGCTGAAGCATCTGCTCCACCCCTAAGAACAAACTCACAAGGAAACACGTCAGCAACTGGATCCATTGCTGTGATGTTCGAATCTGACATTGACGAGACGACAAAGATTGGGAGTTGGGTTGAGATGAAGAAATTGAATCCCAGGCATTTAGAATGGGCCGTTTCTGTGTCCGATGACTCTAAAGATTCAGTTGGATGGGGAATGAGTTTAAATGGGATGGTTGGAGGTCCCAATAGCTGTGACCATTTTCAGATGGAATCCTACTTGAAATTTAACTTAAGTGAGAGATTCAGTGTAAAGCCTGGTATTGTACATATAATCGATGGCAATGCCAAAATGACTGCCCTTATGCTTAGGTCTAATTGGTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

422

Amino Acids

45.72

Weight (kDa)

6.53

Isoelectric Point (pI)

38.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	539
AciI	CCGC	4 cut(s)	61, 371, 498, 539
AclWI	GGATC	2 cut(s)	948, 961
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	1163
AcuI	CTGAAG	2 cut(s)	116, 918
AfaI	GTAC	2 cut(s)	413, 1206
AfiI	CCNNNNNNNGG	4 cut(s)	180, 191, 206, 226
AflII	CTTAAG	1 cut(s)	1171
AflIII	ACRYGT	2 cut(s)	826, 939
AgsI	TTSAA	5 cut(s)	89, 206, 356, 1030, 1162
AjiI	CACGTC	1 cut(s)	942
AjnI	CCWGG	3 cut(s)	153, 1034, 1195
AleI	CACNNNNGTG	1 cut(s)	63
AluBI	AGCT	5 cut(s)	317, 458, 521, 842, 1131
AluI	AGCT	5 cut(s)	317, 458, 521, 842, 1131
Alw21I	GWGCWC	3 cut(s)	523, 740, 844
Alw26I	GTCTC	4 cut(s)	107, 127, 885, 983
AlwI	GGATC	2 cut(s)	948, 961
AlwNI	CAGNNNCTG	1 cut(s)	950
AoxI	GGCC	4 cut(s)	182, 399, 571, 1050
ApoI	RAATTY	1 cut(s)	1163
AspS9I	GGNCC	5 cut(s)	182, 571, 596, 1050, 1121
AsuC2I	CCSGG	1 cut(s)	768
AsuHPI	GGTGA	3 cut(s)	360, 791, 833
AsuII	TTCGAA	2 cut(s)	325, 972
AvaII	GGWCC	2 cut(s)	596, 1121
BaeGI	GKGCMC	1 cut(s)	729
BamHI	GGATCC	1 cut(s)	953
BanII	GRGCYC	2 cut(s)	523, 844
BbsI	GAAGAC	1 cut(s)	788
Bbv12I	GWGCWC	3 cut(s)	523, 740, 844
BccI	CCATC	8 cut(s)	275, 416, 567, 862, 1083, 1105, 1141, 1211
BceAI	ACGGC	4 cut(s)	48, 489, 909, 1037
BcgI	CGANNNNNNTGC	4 cut(s)	517, 551, 1205, 1239
BciT130I	CCWGG	3 cut(s)	155, 1036, 1197
BcnI	CCSGG	1 cut(s)	768
BcoDI	GTCTC	4 cut(s)	107, 127, 885, 983
BfaI	CTAG	2 cut(s)	342, 455
BfrI	CTTAAG	1 cut(s)	1171
Bme1390I	CCNGG	4 cut(s)	155, 768, 1036, 1197
Bme18I	GGWCC	2 cut(s)	596, 1121
BmgBI	CACGTC	1 cut(s)	942
BmgT120I	GGNCC	5 cut(s)	182, 571, 596, 1050, 1121
BmiI	GGNNCC	2 cut(s)	955, 1123
BmrFI	CCNGG	4 cut(s)	155, 768, 1036, 1197
BmrI	ACTGGG	2 cut(s)	339, 704
BmsI	GCATC	3 cut(s)	292, 367, 911
BmuI	ACTGGG	2 cut(s)	339, 704
BpiI	GAAGAC	1 cut(s)	788
Bpu10I	CCTNAGC	1 cut(s)	1247
Bpu14I	TTCGAA	2 cut(s)	325, 972
BpuEI	CTTGAG	1 cut(s)	754
BpuMI	CCSGG	1 cut(s)	768
Bsa29I	ATCGAT	2 cut(s)	583, 1215
BsaJI	CCNNGG	1 cut(s)	1034
BsaXI	ACNNNNNCTCC	4 cut(s)	690, 720, 868, 898
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 191, 206, 226
Bse118I	RCCGGY	1 cut(s)	401
Bse1I	ACTGG	5 cut(s)	334, 512, 699, 704, 955
Bse3DI	GCAATG	3 cut(s)	501, 957, 1228
BseBI	CCWGG	3 cut(s)	155, 1036, 1197
BseCI	ATCGAT	2 cut(s)	583, 1215
BseDI	CCNNGG	1 cut(s)	1034
BseGI	GGATG	3 cut(s)	54, 1094, 1116
BseLI	CCNNNNNNNGG	4 cut(s)	180, 191, 206, 226
BseMI	GCAATG	3 cut(s)	501, 957, 1228
BseMII	CTCAG	3 cut(s)	128, 381, 692
BseNI	ACTGG	5 cut(s)	334, 512, 699, 704, 955
BseRI	GAGGAG	1 cut(s)	873
BseSI	GKGCMC	1 cut(s)	729
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	1 cut(s)	547
Bsh1236I	CGCG	1 cut(s)	539
BshFI	GGCC	4 cut(s)	184, 401, 573, 1052
BshVI	ATCGAT	2 cut(s)	583, 1215
BsiHKAI	GWGCWC	3 cut(s)	523, 740, 844
BsiSI	CCGG	3 cut(s)	76, 402, 768
BslFI	GGGAC	5 cut(s)	155, 545, 705, 836, 1107
BslI	CCNNNNNNNGG	4 cut(s)	180, 191, 206, 226
BsmAI	GTCTC	4 cut(s)	107, 127, 885, 983
BsmBI	CGTCTC	3 cut(s)	107, 885, 983
BsmFI	GGGAC	5 cut(s)	155, 545, 705, 836, 1107
BsnI	GGCC	4 cut(s)	184, 401, 573, 1052
Bsp119I	TTCGAA	2 cut(s)	325, 972
Bsp1286I	GDGCHC	4 cut(s)	523, 729, 740, 844
Bsp1407I	TGTACA	1 cut(s)	1204
Bsp143I	GATC	3 cut(s)	580, 584, 953
BspACI	CCGC	4 cut(s)	61, 371, 498, 539
BspANI	GGCC	4 cut(s)	184, 401, 573, 1052
BspCNI	CTCAG	3 cut(s)	129, 382, 691
BspDI	ATCGAT	2 cut(s)	583, 1215
BspFNI	CGCG	1 cut(s)	539
BspLI	GGNNCC	2 cut(s)	955, 1123
BspPI	GGATC	2 cut(s)	948, 961
BspT104I	TTCGAA	2 cut(s)	325, 972
BspTI	CTTAAG	1 cut(s)	1171
BsrDI	GCAATG	3 cut(s)	501, 957, 1228
BsrFI	RCCGGY	1 cut(s)	401
BsrGI	TGTACA	1 cut(s)	1204
BsrI	ACTGG	5 cut(s)	334, 512, 699, 704, 955
BssAI	RCCGGY	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	1034
BssMI	GATC	3 cut(s)	580, 584, 953
Bst2UI	CCWGG	3 cut(s)	155, 1036, 1197
Bst6I	CTCTTC	1 cut(s)	609
BstAFI	CTTAAG	1 cut(s)	1171
BstAUI	TGTACA	1 cut(s)	1204
BstBI	TTCGAA	2 cut(s)	325, 972
BstDEI	CTNAG	6 cut(s)	137, 308, 390, 678, 917, 1247
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	54, 1094, 1116
BstFNI	CGCG	1 cut(s)	539
BstKTI	GATC	3 cut(s)	583, 587, 956
BstMAI	GTCTC	4 cut(s)	107, 127, 885, 983
BstMBI	GATC	3 cut(s)	580, 584, 953
BstMWI	GCNNNNNNNGC	1 cut(s)	674
BstNI	CCWGG	3 cut(s)	155, 1036, 1197
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	4 cut(s)	153, 766, 1034, 1195
BstSLI	GKGCMC	1 cut(s)	729
BstUI	CGCG	1 cut(s)	539
BstV2I	GAAGAC	1 cut(s)	788
BstX2I	RGATCY	1 cut(s)	953
BstYI	RGATCY	1 cut(s)	953
Bsu15I	ATCGAT	2 cut(s)	583, 1215
BsuRI	GGCC	4 cut(s)	184, 401, 573, 1052
BsuTUI	ATCGAT	2 cut(s)	583, 1215
BtrI	CACGTC	1 cut(s)	942
BtsCI	GGATG	3 cut(s)	54, 1094, 1116
BtsI	GCAGTG	2 cut(s)	631, 727
BtsIMutI	CAGTG	4 cut(s)	519, 631, 727, 1192
CaiI	CAGNNNCTG	1 cut(s)	950
Cfr10I	RCCGGY	1 cut(s)	401
Cfr13I	GGNCC	5 cut(s)	182, 571, 596, 1050, 1121
ClaI	ATCGAT	2 cut(s)	583, 1215
CsiI	ACCWGGT	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	412, 1205
CspCI	CAANNNNNGTGG	2 cut(s)	495, 530
CviAII	CATG	2 cut(s)	374, 827
CviQI	GTAC	2 cut(s)	412, 1205
DdeI	CTNAG	6 cut(s)	137, 308, 390, 678, 917, 1247
DpnI	GATC	3 cut(s)	582, 586, 955
DpnII	GATC	3 cut(s)	580, 584, 953
DraI	TTTAAA	2 cut(s)	225, 1104
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
EciI	GGCGGA	1 cut(s)	487
Ecl136II	GAGCTC	2 cut(s)	521, 842
Eco24I	GRGCYC	2 cut(s)	523, 844
Eco47I	GGWCC	2 cut(s)	596, 1121
Eco53kI	GAGCTC	2 cut(s)	521, 842
Eco57I	CTGAAG	2 cut(s)	116, 918
EcoICRI	GAGCTC	2 cut(s)	521, 842
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	2 cut(s)	571, 1121
EcoRII	CCWGG	3 cut(s)	153, 1034, 1195
EcoT38I	GRGCYC	2 cut(s)	523, 844
Esp3I	CGTCTC	3 cut(s)	107, 885, 983
FaeI	CATG	2 cut(s)	377, 830
FaqI	GGGAC	5 cut(s)	155, 545, 705, 836, 1107
FatI	CATG	2 cut(s)	373, 826
FokI	GGATG	3 cut(s)	41, 1101, 1123
FriOI	GRGCYC	2 cut(s)	523, 844
FspBI	CTAG	2 cut(s)	342, 455
GsaI	CCCAGC	1 cut(s)	321
HaeIII	GGCC	4 cut(s)	184, 401, 573, 1052
HapII	CCGG	3 cut(s)	76, 402, 768
Hin1II	CATG	2 cut(s)	377, 830
HpaII	CCGG	3 cut(s)	76, 402, 768
HphI	GGTGA	3 cut(s)	360, 791, 833
Hpy166II	GTNNAC	1 cut(s)	824
Hpy188I	TCNGA	9 cut(s)	84, 124, 408, 439, 609, 979, 1066, 1146, 1268
Hpy188III	TCNNGA	2 cut(s)	22, 690
Hpy8I	GTNNAC	1 cut(s)	824
HpyAV	CCTTC	2 cut(s)	195, 564
HpyCH4IV	ACGT	3 cut(s)	116, 878, 941
HpyCH4V	TGCA	6 cut(s)	68, 106, 506, 528, 629, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	674
HpyF3I	CTNAG	6 cut(s)	137, 308, 390, 678, 917, 1247
HpySE526I	ACGT	3 cut(s)	116, 878, 941
Hsp92II	CATG	2 cut(s)	377, 830
Kzo9I	GATC	3 cut(s)	580, 584, 953
LmnI	GCTCC	3 cut(s)	518, 839, 913
LweI	GCATC	3 cut(s)	292, 367, 911
MabI	ACCWGGT	1 cut(s)	153
MaeI	CTAG	2 cut(s)	342, 455
MaeII	ACGT	3 cut(s)	116, 878, 941
MaeIII	GTNAC	2 cut(s)	544, 1133
MalI	GATC	3 cut(s)	582, 586, 955
MboI	GATC	3 cut(s)	580, 584, 953
MboII	GAAGA	3 cut(s)	596, 788, 1033
MfeI	CAATTG	2 cut(s)	487, 630
MflI	RGATCY	1 cut(s)	953
MhlI	GDGCHC	4 cut(s)	523, 729, 740, 844
MluCI	AATT	8 cut(s)	70, 487, 507, 630, 750, 1025, 1163, 1255
MlyI	GAGTC	3 cut(s)	14, 559, 1064
MmeI	TCCRAC	3 cut(s)	911, 1066, 1096
MnlI	CCTC	7 cut(s)	62, 132, 203, 376, 612, 894, 1112
MseI	TTAA	4 cut(s)	224, 1103, 1167, 1172
MslI	CAYNNNNRTG	3 cut(s)	63, 270, 962
MspCI	CTTAAG	1 cut(s)	1171
MspI	CCGG	3 cut(s)	76, 402, 768
MspR9I	CCNGG	4 cut(s)	155, 768, 1036, 1197
MunI	CAATTG	2 cut(s)	487, 630
MvaI	CCWGG	3 cut(s)	155, 1036, 1197
MvnI	CGCG	1 cut(s)	539
MwoI	GCNNNNNNNGC	1 cut(s)	674
NciI	CCSGG	1 cut(s)	768
NdeII	GATC	3 cut(s)	580, 584, 953
NlaIII	CATG	2 cut(s)	377, 830
NlaIV	GGNNCC	2 cut(s)	955, 1123
NmuCI	GTSAC	1 cut(s)	1133
NspI	RCATGY	1 cut(s)	830
NspV	TTCGAA	2 cut(s)	325, 972
OliI	CACNNNNGTG	1 cut(s)	63
PciI	ACATGT	1 cut(s)	826
PfeI	GAWTC	8 cut(s)	79, 322, 338, 974, 1030, 1079, 1151, 1182
PfoI	TCCNGGA	1 cut(s)	766
PleI	GAGTC	3 cut(s)	13, 558, 1064
PpsI	GAGTC	3 cut(s)	13, 558, 1064
PpuMI	RGGWCCY	1 cut(s)	1121
PscI	ACATGT	1 cut(s)	826
Psp124BI	GAGCTC	2 cut(s)	523, 844
Psp5II	RGGWCCY	1 cut(s)	1121
Psp6I	CCWGG	3 cut(s)	153, 1034, 1195
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	3 cut(s)	153, 1034, 1195
PspN4I	GGNNCC	2 cut(s)	955, 1123
PspPI	GGNCC	5 cut(s)	182, 571, 596, 1050, 1121
PspPPI	RGGWCCY	1 cut(s)	1121
PstNI	CAGNNNCTG	1 cut(s)	950
PsuI	RGATCY	1 cut(s)	953
RsaI	GTAC	2 cut(s)	413, 1206
RsaNI	GTAC	2 cut(s)	412, 1205
RseI	CAYNNNNRTG	3 cut(s)	63, 270, 962
SacI	GAGCTC	2 cut(s)	523, 844
SaqAI	TTAA	4 cut(s)	224, 1103, 1167, 1172
Sau3AI	GATC	3 cut(s)	580, 584, 953
Sau96I	GGNCC	5 cut(s)	182, 571, 596, 1050, 1121
SchI	GAGTC	3 cut(s)	14, 559, 1064
ScrFI	CCNGG	4 cut(s)	155, 768, 1036, 1197
SduI	GDGCHC	4 cut(s)	523, 729, 740, 844
SexAI	ACCWGGT	1 cut(s)	153
SfaNI	GCATC	3 cut(s)	292, 367, 911
SfuI	TTCGAA	2 cut(s)	325, 972
SinI	GGWCC	2 cut(s)	596, 1121
SmiMI	CAYNNNNRTG	3 cut(s)	63, 270, 962
SmlI	CTYRAG	2 cut(s)	733, 1171
SmoI	CTYRAG	2 cut(s)	733, 1171
Sse9I	AATT	8 cut(s)	70, 487, 507, 630, 750, 1025, 1163, 1255
SsiI	CCGC	4 cut(s)	61, 371, 498, 539
SspMI	CTAG	2 cut(s)	342, 455
SstI	GAGCTC	2 cut(s)	523, 844
StyD4I	CCNGG	4 cut(s)	153, 766, 1034, 1195
TaiI	ACGT	3 cut(s)	119, 881, 944
TaqI	TCGA	6 cut(s)	29, 45, 325, 583, 972, 1215
TasI	AATT	8 cut(s)	70, 487, 507, 630, 750, 1025, 1163, 1255
TatI	WGTACW	2 cut(s)	411, 1204
TfiI	GAWTC	8 cut(s)	79, 322, 338, 974, 1030, 1079, 1151, 1182
Tru1I	TTAA	4 cut(s)	224, 1103, 1167, 1172
Tru9I	TTAA	4 cut(s)	224, 1103, 1167, 1172
TscAI	CASTG	4 cut(s)	519, 631, 734, 1192
TseFI	GTSAC	1 cut(s)	1133
Tsp45I	GTSAC	1 cut(s)	1133
TspDTI	ATGAA	2 cut(s)	660, 1034
TspGWI	ACGGA	2 cut(s)	838, 852
TspRI	CASTG	4 cut(s)	519, 631, 734, 1192
Vha464I	CTTAAG	1 cut(s)	1171
VpaK11BI	GGWCC	2 cut(s)	596, 1121
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	1163
XceI	RCATGY	1 cut(s)	830
XspI	CTAG	2 cut(s)	342, 455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.