Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Reverse (-)

33287714 .. 33290499

Gene Structure 2786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G361500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGAACCCGTAGCTTTTGTAGTAGACAAGTTTAGAGGTTTGACGAAATCGACCCAAGAATTGTTTGACGGCCTCATTCATGGGCACCCTCAACGTTCAGCTCGCCGACATCCGATTGAAATATTGAAGCGGCTGCAACGAGAAGCATTTTCGGACTTAATGAAACTCAGGGATAGACAAGATAAGGTTGAGAGAATGGTTTCCTTGTATGGAACTTCCAAAGGAAGTCCATTCCAAGAAGCCAGCACTCTTGTAAGGGGAGAGGTTGATCTCTTGGGGGCTGTCTTGTTGATGCATAATATTGACGATGATCACAAATCTGATGTTCTTAGTCGAGCAGGAATGAGAACCGGGGTTGATTCAAGGTTTGCTTTTGAAACAAGTGTTCGGCAGAATGACACGCTTGTGACGGAGTTTGTAGCCAGTCAGAAGCACAAGGGTAGTCTTTCTGATCTTTCAGAATGCCCACTTTCTCTAGCAAAAGTTTCCTATACAGCAAATGTCAGCAACTGGTTATCTGCAATTGCAATCCCAGTGGGAGCTCAGTGCAGGGATGTTGCAGTTCTTACAAATCCTTCCCACCAGGGGAAGGGCCTTACTGATCTTTCATCATTTGGGCCACCGCTTCTAAATCAGCATAATGGCAGTGCAGTTGGCTTAATGGTGAAAAAATCAAATACTGTTGCTTCATTGGCTCAGTTTGTCTCCGGACTGGGAGCGCAAGTGGGTTCTGGTAGAGTTGAGCTTTGCTTGAGCACTTTTGGGCAAATTGTCTGTCAACTTCCTGGAGGAACAAAGCTCTCGCTTCTGGGTCTTCACCAAATGCCTAGATTATCAAGTGAGTATGTGGATCATAGAATTGGAGCTCTTACCATTCCCTTAGGCAGTTTGACACATGATAGATTCCGTGAGACAATCGTTGAAGGCAGTTTGACACAAGATAGATCCCCGGAGGCAATGGTTGAAGCATACGTTCCAGCACTGGGATCAAACTCACCGGAAAAGGGTTCAAGTGGATCCATTGCTCTGATGTTGGAATCAGAAGTTGATGAGATGACAAAGCTTGGGGGTTGGATTGAGATGAAGCAGTCAAATCCCAGGCATTTAGAATGGGCTGTGAGTGTGTCTGATGATTCTGAAGATTCAGTTGGATGGGGAATGAATTTGAGTGGGATACTTGGAGGTCCTAATTTATGGGACCGTGTTCAGATTGAATCCTACATGAAATTAAACTTGGGCAAGAGATTCAGTGTGAAGCCAGGTATTGCACATATTGTCGATGGGAATGCCAGAATGACTGCGCTTATGCTACGGTCCAACTGGTCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

444

Amino Acids

48.23

Weight (kDa)

6.68

Isoelectric Point (pI)

38.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	84
AccI	GTMKAC	1 cut(s)	24
AccIII	TCCGGA	1 cut(s)	707
AciI	CCGC	2 cut(s)	130, 623
AclI	AACGTT	1 cut(s)	94
AclWI	GGATC	5 cut(s)	858, 939, 994, 1011, 1024
AcsI	RAATTY	1 cut(s)	1162
AcuI	CTGAAG	1 cut(s)	1158
AfiI	CCNNNNNNNGG	4 cut(s)	585, 589, 983, 1004
AgsI	TTSAA	8 cut(s)	119, 127, 363, 377, 923, 965, 1011, 1214
AjnI	CCWGG	4 cut(s)	582, 784, 1097, 1258
AjuI	GAANNNNNNNTTGG	4 cut(s)	1131, 1163, 1217, 1249
AleI	CACNNNNGTG	1 cut(s)	404
AluBI	AGCT	7 cut(s)	14, 101, 542, 745, 799, 866, 1063
AluI	AGCT	7 cut(s)	14, 101, 542, 745, 799, 866, 1063
Alw21I	GWGCWC	3 cut(s)	544, 758, 868
Alw26I	GTCTC	2 cut(s)	709, 905
AlwI	GGATC	5 cut(s)	858, 939, 994, 1011, 1024
AlwNI	CAGNNNCTG	1 cut(s)	510
Aor13HI	TCCGGA	1 cut(s)	707
AoxI	GGCC	3 cut(s)	70, 592, 617
ApeKI	GCWGC	1 cut(s)	133
ApoI	RAATTY	1 cut(s)	1162
ArsI	GACNNNNNNTTYG	2 cut(s)	760, 792
Asp700I	GAANNNNTTC	1 cut(s)	199
AspLEI	GCGC	2 cut(s)	721, 1303
AspS9I	GGNCC	6 cut(s)	592, 617, 1184, 1198, 1314, 1323
AsuC2I	CCSGG	2 cut(s)	352, 950
AsuHPI	GGTGA	3 cut(s)	676, 809, 987
AvaII	GGWCC	4 cut(s)	1184, 1198, 1314, 1323
AxyI	CCTNAGG	1 cut(s)	880
BaeGI	GKGCMC	1 cut(s)	87
BamHI	GGATCC	1 cut(s)	1016
BanI	GGYRCC	1 cut(s)	84
BanII	GRGCYC	2 cut(s)	544, 868
BbsI	GAAGAC	1 cut(s)	806
Bbv12I	GWGCWC	3 cut(s)	544, 758, 868
BbvI	GCAGC	1 cut(s)	120
BccI	CCATC	2 cut(s)	1146, 1274
BceAI	ACGGC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	1268, 1302
BciT130I	CCWGG	4 cut(s)	584, 786, 1099, 1260
BciVI	GTATCC	1 cut(s)	1167
BclI	TGATCA	1 cut(s)	310
BcnI	CCSGG	2 cut(s)	352, 950
BcoDI	GTCTC	2 cut(s)	709, 905
BfaI	CTAG	2 cut(s)	476, 828
BfuI	GTATCC	1 cut(s)	1167
BisI	GCNGC	2 cut(s)	131, 134
BlsI	GCNGC	2 cut(s)	132, 135
Bme1390I	CCNGG	6 cut(s)	352, 584, 786, 950, 1099, 1260
Bme18I	GGWCC	4 cut(s)	1184, 1198, 1314, 1323
BmgT120I	GGNCC	6 cut(s)	592, 617, 1184, 1198, 1314, 1323
BmiI	GGNNCC	5 cut(s)	6, 86, 1018, 1199, 1325
BmrFI	CCNGG	6 cut(s)	352, 584, 786, 950, 1099, 1260
BmrI	ACTGGG	3 cut(s)	527, 722, 992
BmsI	GCATC	1 cut(s)	282
BmuI	ACTGGG	3 cut(s)	527, 722, 992
BpiI	GAAGAC	1 cut(s)	806
BpmI	CTGGAG	1 cut(s)	807
BpuEI	CTTGAG	1 cut(s)	772
BpuMI	CCSGG	2 cut(s)	352, 950
BsaJI	CCNNGG	4 cut(s)	351, 583, 948, 1097
BsaWI	WCCGGW	2 cut(s)	707, 997
BsaXI	ACNNNNNCTCC	2 cut(s)	708, 738
Bsc4I	CCNNNNNNNGG	4 cut(s)	585, 589, 983, 1004
Bse1I	ACTGG	6 cut(s)	423, 515, 533, 717, 987, 1325
Bse21I	CCTNAGG	1 cut(s)	880
Bse3DI	GCAATG	2 cut(s)	963, 1020
BseAI	TCCGGA	1 cut(s)	707
BseBI	CCWGG	4 cut(s)	584, 786, 1099, 1260
BseDI	CCNNGG	4 cut(s)	351, 583, 948, 1097
BseGI	GGATG	3 cut(s)	109, 559, 1157
BseLI	CCNNNNNNNGG	4 cut(s)	585, 589, 983, 1004
BseMI	GCAATG	2 cut(s)	963, 1020
BseMII	CTCAG	3 cut(s)	181, 557, 710
BseNI	ACTGG	6 cut(s)	423, 515, 533, 717, 987, 1325
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	1 cut(s)	120
BsgI	GTGCAG	2 cut(s)	568, 669
BshFI	GGCC	3 cut(s)	72, 594, 619
BshNI	GGYRCC	1 cut(s)	84
BsiHKAI	GWGCWC	3 cut(s)	544, 758, 868
BsiSI	CCGG	4 cut(s)	351, 708, 950, 998
BslFI	GGGAC	2 cut(s)	1211, 1309
BslI	CCNNNNNNNGG	4 cut(s)	585, 589, 983, 1004
BsmAI	GTCTC	2 cut(s)	709, 905
BsmFI	GGGAC	2 cut(s)	1211, 1309
BsmI	GAATGC	2 cut(s)	467, 1291
BsnI	GGCC	3 cut(s)	72, 594, 619
Bsp1286I	GDGCHC	4 cut(s)	87, 544, 758, 868
Bsp13I	TCCGGA	1 cut(s)	707
Bsp143I	GATC	8 cut(s)	268, 310, 451, 601, 850, 944, 986, 1016
BspACI	CCGC	2 cut(s)	130, 623
BspANI	GGCC	3 cut(s)	72, 594, 619
BspCNI	CTCAG	3 cut(s)	180, 556, 709
BspEI	TCCGGA	1 cut(s)	707
BspLI	GGNNCC	5 cut(s)	6, 86, 1018, 1199, 1325
BspPI	GGATC	5 cut(s)	858, 939, 994, 1011, 1024
BspT107I	GGYRCC	1 cut(s)	84
BsrDI	GCAATG	2 cut(s)	963, 1020
BsrI	ACTGG	6 cut(s)	423, 515, 533, 717, 987, 1325
BssECI	CCNNGG	4 cut(s)	351, 583, 948, 1097
BssMI	GATC	8 cut(s)	268, 310, 451, 601, 850, 944, 986, 1016
Bst2UI	CCWGG	4 cut(s)	584, 786, 1099, 1260
Bst4CI	ACNGT	3 cut(s)	682, 1202, 1314
BstC8I	GCNNGC	2 cut(s)	103, 244
BstDEI	CTNAG	5 cut(s)	167, 329, 543, 696, 880
BstF5I	GGATG	3 cut(s)	109, 559, 1157
BstHHI	GCGC	2 cut(s)	721, 1303
BstKTI	GATC	8 cut(s)	271, 313, 454, 604, 853, 947, 989, 1019
BstMAI	GTCTC	2 cut(s)	709, 905
BstMBI	GATC	8 cut(s)	268, 310, 451, 601, 850, 944, 986, 1016
BstMWI	GCNNNNNNNGC	1 cut(s)	692
BstNI	CCWGG	4 cut(s)	584, 786, 1099, 1260
BstSCI	CCNGG	6 cut(s)	350, 582, 784, 948, 1097, 1258
BstSLI	GKGCMC	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	120
BstV2I	GAAGAC	1 cut(s)	806
BstX2I	RGATCY	2 cut(s)	944, 1016
BstYI	RGATCY	2 cut(s)	944, 1016
Bsu36I	CCTNAGG	1 cut(s)	880
BsuI	GTATCC	1 cut(s)	1167
BsuRI	GGCC	3 cut(s)	72, 594, 619
BtsCI	GGATG	3 cut(s)	109, 559, 1157
BtsI	GCAGTG	1 cut(s)	652
BtsIMutI	CAGTG	5 cut(s)	540, 551, 652, 980, 1255
Cac8I	GCNNGC	2 cut(s)	103, 244
CaiI	CAGNNNCTG	1 cut(s)	510
CfoI	GCGC	2 cut(s)	721, 1303
Cfr13I	GGNCC	6 cut(s)	592, 617, 1184, 1198, 1314, 1323
CspCI	CAANNNNNGTGG	2 cut(s)	516, 551
CviAII	CATG	3 cut(s)	80, 896, 1222
DdeI	CTNAG	5 cut(s)	167, 329, 543, 696, 880
DpnI	GATC	8 cut(s)	270, 312, 453, 603, 852, 946, 988, 1018
DpnII	GATC	8 cut(s)	268, 310, 451, 601, 850, 944, 986, 1016
Ecl136II	GAGCTC	2 cut(s)	542, 866
Eco24I	GRGCYC	2 cut(s)	544, 868
Eco47I	GGWCC	4 cut(s)	1184, 1198, 1314, 1323
Eco53kI	GAGCTC	2 cut(s)	542, 866
Eco57I	CTGAAG	1 cut(s)	1158
Eco81I	CCTNAGG	1 cut(s)	880
EcoICRI	GAGCTC	2 cut(s)	542, 866
EcoO109I	RGGNCCY	2 cut(s)	592, 1184
EcoRII	CCWGG	4 cut(s)	582, 784, 1097, 1258
EcoT22I	ATGCAT	1 cut(s)	297
EcoT38I	GRGCYC	2 cut(s)	544, 868
FaeI	CATG	3 cut(s)	83, 899, 1225
FalI	AAGNNNNNCTT	2 cut(s)	355, 387
FaqI	GGGAC	2 cut(s)	1211, 1309
FatI	CATG	3 cut(s)	79, 895, 1221
FbaI	TGATCA	1 cut(s)	310
FblI	GTMKAC	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	131, 134
FokI	GGATG	3 cut(s)	96, 566, 1164
FriOI	GRGCYC	2 cut(s)	544, 868
Fsp4HI	GCNGC	2 cut(s)	131, 134
FspBI	CTAG	2 cut(s)	476, 828
GlaI	GCGC	2 cut(s)	720, 1302
GluI	GCNGC	2 cut(s)	131, 134
GsuI	CTGGAG	1 cut(s)	807
HaeIII	GGCC	3 cut(s)	72, 594, 619
HapII	CCGG	4 cut(s)	351, 708, 950, 998
HhaI	GCGC	2 cut(s)	721, 1303
Hin1II	CATG	3 cut(s)	83, 899, 1225
Hin6I	GCGC	2 cut(s)	719, 1301
HinP1I	GCGC	2 cut(s)	719, 1301
HincII	GTYRAC	1 cut(s)	779
HindII	GTYRAC	1 cut(s)	779
HindIII	AAGCTT	1 cut(s)	1061
HinfI	GANTC	7 cut(s)	359, 903, 1037, 1133, 1142, 1214, 1245
HpaII	CCGG	4 cut(s)	351, 708, 950, 998
HphI	GGTGA	3 cut(s)	676, 809, 987
Hpy166II	GTNNAC	2 cut(s)	25, 779
Hpy188III	TCNNGA	1 cut(s)	708
Hpy8I	GTNNAC	2 cut(s)	25, 779
HpyAV	CCTTC	3 cut(s)	583, 585, 917
HpyCH4III	ACNGT	3 cut(s)	682, 1202, 1314
HpyCH4IV	ACGT	2 cut(s)	94, 972
HpyCH4V	TGCA	8 cut(s)	136, 295, 521, 527, 549, 560, 650, 1268
HpyF10VI	GCNNNNNNNGC	1 cut(s)	692
HpyF3I	CTNAG	5 cut(s)	167, 329, 543, 696, 880
HpySE526I	ACGT	2 cut(s)	94, 972
Hsp92II	CATG	3 cut(s)	83, 899, 1225
HspAI	GCGC	2 cut(s)	719, 1301
Kpn2I	TCCGGA	1 cut(s)	707
Ksp22I	TGATCA	1 cut(s)	310
Kzo9I	GATC	8 cut(s)	268, 310, 451, 601, 850, 944, 986, 1016
LmnI	GCTCC	3 cut(s)	539, 716, 863
Lsp1109I	GCAGC	1 cut(s)	120
LweI	GCATC	1 cut(s)	282
MaeI	CTAG	2 cut(s)	476, 828
MaeII	ACGT	2 cut(s)	94, 972
MaeIII	GTNAC	1 cut(s)	406
MalI	GATC	8 cut(s)	270, 312, 453, 603, 852, 946, 988, 1018
MboI	GATC	8 cut(s)	268, 310, 451, 601, 850, 944, 986, 1016
MboII	GAAGA	2 cut(s)	806, 1151
MfeI	CAATTG	1 cut(s)	522
MflI	RGATCY	2 cut(s)	944, 1016
MhlI	GDGCHC	4 cut(s)	87, 544, 758, 868
MluCI	AATT	7 cut(s)	59, 522, 768, 858, 1162, 1189, 1226
MmeI	TCCRAC	3 cut(s)	1014, 1052, 1129
MnlI	CCTC	7 cut(s)	29, 83, 99, 256, 782, 946, 1175
Mph1103I	ATGCAT	1 cut(s)	297
MroI	TCCGGA	1 cut(s)	707
MroXI	GAANNNNTTC	1 cut(s)	199
MseI	TTAA	3 cut(s)	158, 659, 1229
MslI	CAYNNNNRTG	1 cut(s)	404
MspI	CCGG	4 cut(s)	351, 708, 950, 998
MspR9I	CCNGG	6 cut(s)	352, 584, 786, 950, 1099, 1260
MunI	CAATTG	1 cut(s)	522
Mva1269I	GAATGC	2 cut(s)	467, 1291
MvaI	CCWGG	4 cut(s)	584, 786, 1099, 1260
MwoI	GCNNNNNNNGC	1 cut(s)	692
NciI	CCSGG	2 cut(s)	352, 950
NdeII	GATC	8 cut(s)	268, 310, 451, 601, 850, 944, 986, 1016
NlaIII	CATG	3 cut(s)	83, 899, 1225
NlaIV	GGNNCC	5 cut(s)	6, 86, 1018, 1199, 1325
NmuCI	GTSAC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	297
OliI	CACNNNNGTG	1 cut(s)	404
PctI	GAATGC	2 cut(s)	467, 1291
PdmI	GAANNNNTTC	1 cut(s)	199
PfeI	GAWTC	7 cut(s)	359, 903, 1037, 1133, 1142, 1214, 1245
PfoI	TCCNGGA	1 cut(s)	784
PkrI	GCNGC	2 cut(s)	132, 135
PpuMI	RGGWCCY	1 cut(s)	1184
Psp124BI	GAGCTC	2 cut(s)	544, 868
Psp1406I	AACGTT	1 cut(s)	94
Psp5II	RGGWCCY	1 cut(s)	1184
Psp6I	CCWGG	4 cut(s)	582, 784, 1097, 1258
PspGI	CCWGG	4 cut(s)	582, 784, 1097, 1258
PspN4I	GGNNCC	5 cut(s)	6, 86, 1018, 1199, 1325
PspPI	GGNCC	6 cut(s)	592, 617, 1184, 1198, 1314, 1323
PspPPI	RGGWCCY	1 cut(s)	1184
PstNI	CAGNNNCTG	1 cut(s)	510
PsuI	RGATCY	2 cut(s)	944, 1016
RseI	CAYNNNNRTG	1 cut(s)	404
SacI	GAGCTC	2 cut(s)	544, 868
SaqAI	TTAA	3 cut(s)	158, 659, 1229
SatI	GCNGC	2 cut(s)	131, 134
Sau3AI	GATC	8 cut(s)	268, 310, 451, 601, 850, 944, 986, 1016
Sau96I	GGNCC	6 cut(s)	592, 617, 1184, 1198, 1314, 1323
ScrFI	CCNGG	6 cut(s)	352, 584, 786, 950, 1099, 1260
SduI	GDGCHC	4 cut(s)	87, 544, 758, 868
SfaNI	GCATC	1 cut(s)	282
SinI	GGWCC	4 cut(s)	1184, 1198, 1314, 1323
SmiMI	CAYNNNNRTG	1 cut(s)	404
SmlI	CTYRAG	1 cut(s)	751
SmoI	CTYRAG	1 cut(s)	751
Sse9I	AATT	7 cut(s)	59, 522, 768, 858, 1162, 1189, 1226
SsiI	CCGC	2 cut(s)	130, 623
SspI	AATATT	2 cut(s)	123, 301
SspMI	CTAG	2 cut(s)	476, 828
SstI	GAGCTC	2 cut(s)	544, 868
StyD4I	CCNGG	6 cut(s)	350, 582, 784, 948, 1097, 1258
TaaI	ACNGT	3 cut(s)	682, 1202, 1314
TaiI	ACGT	2 cut(s)	97, 975
TaqI	TCGA	3 cut(s)	50, 334, 1278
TasI	AATT	7 cut(s)	59, 522, 768, 858, 1162, 1189, 1226
TauI	GCSGC	1 cut(s)	133
TfiI	GAWTC	7 cut(s)	359, 903, 1037, 1133, 1142, 1214, 1245
Tru1I	TTAA	3 cut(s)	158, 659, 1229
Tru9I	TTAA	3 cut(s)	158, 659, 1229
TscAI	CASTG	5 cut(s)	540, 551, 652, 987, 1255
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	1 cut(s)	133
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	7 cut(s)	68, 176, 597, 678, 1097, 1175, 1238
TspGWI	ACGGA	2 cut(s)	425, 896
TspRI	CASTG	5 cut(s)	540, 551, 652, 987, 1255
VpaK11BI	GGWCC	4 cut(s)	1184, 1198, 1314, 1323
XapI	RAATTY	1 cut(s)	1162
XmiI	GTMKAC	1 cut(s)	24
XmnI	GAANNNNTTC	1 cut(s)	199
XspI	CTAG	2 cut(s)	476, 828
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.