Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Reverse (-)

6671642 .. 6674227

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00164760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGACTTCCGGAGGAAAAAGGGAGTCCTTTCCAGGAGGCCAACACTCTTATCAGGGGAGAGTTTGATCACTTGGGGGCGTTATCATTCATGCATAATGATGCTGAGTCTCATCAAGAATCTGAGGCTCTTAGTCTGGCAGGAATATTAACTGGGATTAAGTCAAGGTTCAGTGTTGAAACAACTGTTCGAGAAAATGATACGCTTGTGGCGGAGTTTGTGGCCAGTGAAAAACACAAAAATGATCTCTCTGATCTTTCAGAATGCTCGCTTTCTCTAGCAAAAGTGGCGTATACAGCAAATGTTAGTGATTGGTTATCTGCAATTGCAATCCCAGTGGGAGCTCAATGCAGGGATGTCGCAGTTCTTACAAATCCTTCTCATCAGGGAAAGGGCCTAACTCATTTTTCATCATTTGGACCACCTCTTTTAAATGAGCGTAATGGTAGTGCAATTGGCTTGATGGTAAAAAAATCAAATGTTGTTGCTTCATTGGCACAGTTTGTTTCTGGACAAGTAGGTTCTAGTAGAGTCGGGCGTTGCTTCAGCACTTTTGGGCAAGTTGTCTGTCAATTCCCTGCAAGAACAAAGCTCTCACTTCTGGGTCTTCATCAAGCGCCTAAATTATCTAGTGAACATGTCAGTCATGTAGCTTCTAACTTTGGATTAGGCGATTTGATACAACATCTATCCCCTGAGACAACAGTTGAAGCATATTTTCCACCCTTGGGAACAAGCTCACAGGAAAATGTGTCAACTGGACCAACTGGATCCATTGCTCTGATGCTGGAATCCGAAATTGATGAGATTACAAAGATTGGAGGTTGGATTGAGATGAAGCAATCGAATCCCAAGAATTTAGAATGGGCTGTCACAGTCTCTGATGACTCTGAAGATTCCTTTGGATGGGGAGTGAGTTTAAATGGGGGACTGGGAGTCGAAGGCCCCCAAAGTTGGAACCATTTCCAGGTTGAATCCTACTTGAAACTTAACTTGGGAAAGAGACTGAGTGTAAAGCCAGGTATCACCACACATCTAGTGGATGGCAAACCCAGAATGACTGCTCTGATGCTTCGATCTAACTGGTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

364

Amino Acids

39.19

Weight (kDa)

5.64

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	293
AccIII	TCCGGA	1 cut(s)	10
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	2 cut(s)	765, 778
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	856
AcuI	CTGAAG	2 cut(s)	529, 912
AfiI	CCNNNNNNNGG	4 cut(s)	728, 906, 954, 967
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	4 cut(s)	179, 710, 974, 985
AhdI	GACNNNNNGTC	1 cut(s)	935
AjnI	CCWGG	3 cut(s)	33, 966, 1018
AjuI	GAANNNNNNNTTGG	4 cut(s)	885, 917, 977, 1009
AluBI	AGCT	4 cut(s)	344, 592, 653, 738
AluI	AGCT	4 cut(s)	344, 592, 653, 738
Alw21I	GWGCWC	1 cut(s)	346
Alw26I	GTCTC	4 cut(s)	114, 692, 883, 997
AlwI	GGATC	2 cut(s)	765, 778
AlwNI	CAGNNNCTG	1 cut(s)	881
Aor13HI	TCCGGA	1 cut(s)	10
AoxI	GGCC	4 cut(s)	39, 222, 394, 943
ApoI	RAATTY	1 cut(s)	856
Asp700I	GAANNNNTTC	1 cut(s)	962
AspLEI	GCGC	1 cut(s)	619
AspS9I	GGNCC	4 cut(s)	394, 419, 761, 944
AsuHPI	GGTGA	1 cut(s)	1018
AvaII	GGWCC	2 cut(s)	419, 761
BaeI	ACNNNNGTAYC	2 cut(s)	192, 225
BalI	TGGCCA	1 cut(s)	224
BamHI	GGATCC	1 cut(s)	770
BanII	GRGCYC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	599
Bbv12I	GWGCWC	1 cut(s)	346
BccI	CCATC	3 cut(s)	457, 900, 1037
BcgI	CGANNNNNNTGC	2 cut(s)	340, 374
BciT130I	CCWGG	3 cut(s)	35, 968, 1020
BclI	TGATCA	1 cut(s)	67
BcoDI	GTCTC	4 cut(s)	114, 692, 883, 997
BfaI	CTAG	4 cut(s)	278, 525, 630, 1037
BfoI	RGCGCY	1 cut(s)	620
Bme1390I	CCNGG	3 cut(s)	35, 968, 1020
Bme18I	GGWCC	2 cut(s)	419, 761
BmeRI	GACNNNNNGTC	1 cut(s)	935
BmgT120I	GGNCC	4 cut(s)	394, 419, 761, 944
BmiI	GGNNCC	4 cut(s)	772, 946, 959, 1088
BmrFI	CCNGG	3 cut(s)	35, 968, 1020
BmrI	ACTGGG	3 cut(s)	162, 329, 941
BmsI	GCATC	3 cut(s)	91, 774, 1059
BmuI	ACTGGG	3 cut(s)	162, 329, 941
BpiI	GAAGAC	1 cut(s)	599
BsaJI	CCNNGG	1 cut(s)	726
BsaWI	WCCGGW	1 cut(s)	10
Bsc4I	CCNNNNNNNGG	4 cut(s)	728, 906, 954, 967
Bse1I	ACTGG	7 cut(s)	157, 225, 335, 763, 772, 936, 1088
Bse3DI	GCAATG	1 cut(s)	774
BseAI	TCCGGA	1 cut(s)	10
BseBI	CCWGG	3 cut(s)	35, 968, 1020
BseDI	CCNNGG	1 cut(s)	726
BseGI	GGATG	3 cut(s)	361, 911, 1048
BseLI	CCNNNNNNNGG	4 cut(s)	728, 906, 954, 967
BseMI	GCAATG	1 cut(s)	774
BseMII	CTCAG	4 cut(s)	96, 114, 687, 998
BseNI	ACTGG	7 cut(s)	157, 225, 335, 763, 772, 936, 1088
BshFI	GGCC	4 cut(s)	41, 224, 396, 945
BsiHKAI	GWGCWC	1 cut(s)	346
BsiSI	CCGG	1 cut(s)	11
BslFI	GGGAC	2 cut(s)	18, 942
BslI	CCNNNNNNNGG	4 cut(s)	728, 906, 954, 967
BsmAI	GTCTC	4 cut(s)	114, 692, 883, 997
BsmFI	GGGAC	2 cut(s)	18, 942
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	4 cut(s)	41, 224, 396, 945
Bsp1286I	GDGCHC	1 cut(s)	346
Bsp13I	TCCGGA	1 cut(s)	10
Bsp143I	GATC	5 cut(s)	67, 244, 253, 770, 1076
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	4 cut(s)	41, 224, 396, 945
BspCNI	CTCAG	4 cut(s)	97, 115, 688, 999
BspEI	TCCGGA	1 cut(s)	10
BspLI	GGNNCC	4 cut(s)	772, 946, 959, 1088
BspPI	GGATC	2 cut(s)	765, 778
BsrDI	GCAATG	1 cut(s)	774
BsrI	ACTGG	7 cut(s)	157, 225, 335, 763, 772, 936, 1088
BssECI	CCNNGG	1 cut(s)	726
BssMI	GATC	5 cut(s)	67, 244, 253, 770, 1076
BssNAI	GTATAC	1 cut(s)	294
BssT1I	CCWWGG	1 cut(s)	726
Bst1107I	GTATAC	1 cut(s)	294
Bst2UI	CCWGG	3 cut(s)	35, 968, 1020
Bst4CI	ACNGT	4 cut(s)	187, 501, 706, 877
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	5 cut(s)	105, 123, 131, 696, 1007
BstF5I	GGATG	3 cut(s)	361, 911, 1048
BstH2I	RGCGCY	1 cut(s)	620
BstHHI	GCGC	1 cut(s)	619
BstKTI	GATC	5 cut(s)	70, 247, 256, 773, 1079
BstMAI	GTCTC	4 cut(s)	114, 692, 883, 997
BstMBI	GATC	5 cut(s)	67, 244, 253, 770, 1076
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 296, 494
BstNI	CCWGG	3 cut(s)	35, 968, 1020
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	3 cut(s)	33, 966, 1018
BstV2I	GAAGAC	1 cut(s)	599
BstX2I	RGATCY	1 cut(s)	770
BstYI	RGATCY	1 cut(s)	770
BstZ17I	GTATAC	1 cut(s)	294
BsuRI	GGCC	4 cut(s)	41, 224, 396, 945
BtsCI	GGATG	3 cut(s)	361, 911, 1048
BtsIMutI	CAGTG	3 cut(s)	178, 232, 342
Cac8I	GCNNGC	1 cut(s)	269
CaiI	CAGNNNCTG	1 cut(s)	881
CfoI	GCGC	1 cut(s)	619
Cfr13I	GGNCC	4 cut(s)	394, 419, 761, 944
CspCI	CAANNNNNGTGG	2 cut(s)	318, 353
CviAII	CATG	3 cut(s)	91, 638, 647
DdeI	CTNAG	5 cut(s)	105, 123, 131, 696, 1007
DpnI	GATC	5 cut(s)	69, 246, 255, 772, 1078
DpnII	GATC	5 cut(s)	67, 244, 253, 770, 1076
DraI	TTTAAA	2 cut(s)	432, 921
DriI	GACNNNNNGTC	1 cut(s)	935
EaeI	YGGCCR	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	935
EciI	GGCGGA	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	344
Eco130I	CCWWGG	1 cut(s)	726
Eco24I	GRGCYC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	419, 761
Eco53kI	GAGCTC	1 cut(s)	344
Eco57I	CTGAAG	2 cut(s)	529, 912
EcoICRI	GAGCTC	1 cut(s)	344
EcoO109I	RGGNCCY	2 cut(s)	394, 944
EcoRII	CCWGG	3 cut(s)	33, 966, 1018
EcoT14I	CCWWGG	1 cut(s)	726
EcoT22I	ATGCAT	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	346
ErhI	CCWWGG	1 cut(s)	726
FaeI	CATG	3 cut(s)	94, 641, 650
FaiI	YATR	6 cut(s)	92, 96, 294, 639, 648, 715
FaqI	GGGAC	2 cut(s)	18, 942
FatI	CATG	3 cut(s)	90, 637, 646
FbaI	TGATCA	1 cut(s)	67
FblI	GTMKAC	1 cut(s)	293
FokI	GGATG	3 cut(s)	368, 918, 1055
FriOI	GRGCYC	1 cut(s)	346
FspBI	CTAG	4 cut(s)	278, 525, 630, 1037
GlaI	GCGC	1 cut(s)	618
HaeII	RGCGCY	1 cut(s)	620
HaeIII	GGCC	4 cut(s)	41, 224, 396, 945
HapII	CCGG	1 cut(s)	11
HhaI	GCGC	1 cut(s)	619
Hin1II	CATG	3 cut(s)	94, 641, 650
Hin6I	GCGC	1 cut(s)	617
HinP1I	GCGC	1 cut(s)	617
HincII	GTYRAC	1 cut(s)	756
HindII	GTYRAC	1 cut(s)	756
HpaII	CCGG	1 cut(s)	11
HphI	GGTGA	1 cut(s)	1018
Hpy166II	GTNNAC	3 cut(s)	294, 635, 756
Hpy188I	TCNGA	9 cut(s)	124, 253, 262, 783, 796, 883, 892, 1068, 1094
Hpy188III	TCNNGA	4 cut(s)	11, 116, 191, 510
Hpy8I	GTNNAC	3 cut(s)	294, 635, 756
HpyAV	CCTTC	2 cut(s)	387, 935
HpyCH4III	ACNGT	4 cut(s)	187, 501, 706, 877
HpyCH4V	TGCA	6 cut(s)	94, 323, 329, 351, 452, 581
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 296, 494
HpyF3I	CTNAG	5 cut(s)	105, 123, 131, 696, 1007
Hsp92II	CATG	3 cut(s)	94, 641, 650
HspAI	GCGC	1 cut(s)	617
Kpn2I	TCCGGA	1 cut(s)	10
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	5 cut(s)	67, 244, 253, 770, 1076
LmnI	GCTCC	1 cut(s)	341
LweI	GCATC	3 cut(s)	91, 774, 1059
MaeI	CTAG	4 cut(s)	278, 525, 630, 1037
MaeIII	GTNAC	1 cut(s)	871
MalI	GATC	5 cut(s)	69, 246, 255, 772, 1078
MboI	GATC	5 cut(s)	67, 244, 253, 770, 1076
MboII	GAAGA	2 cut(s)	599, 905
MfeI	CAATTG	2 cut(s)	324, 453
MflI	RGATCY	1 cut(s)	770
MhlI	GDGCHC	1 cut(s)	346
MlsI	TGGCCA	1 cut(s)	224
MluCI	AATT	6 cut(s)	324, 453, 572, 623, 798, 856
MluNI	TGGCCA	1 cut(s)	224
MlyI	GAGTC	5 cut(s)	34, 116, 540, 881, 945
MmeI	TCCRAC	2 cut(s)	806, 935
MnlI	CCTC	5 cut(s)	7, 31, 118, 435, 815
Mox20I	TGGCCA	1 cut(s)	224
Mph1103I	ATGCAT	1 cut(s)	96
MroI	TCCGGA	1 cut(s)	10
MroXI	GAANNNNTTC	1 cut(s)	962
MscI	TGGCCA	1 cut(s)	224
MseI	TTAA	5 cut(s)	149, 159, 431, 920, 990
MslI	CAYNNNNRTG	2 cut(s)	99, 240
Msp20I	TGGCCA	1 cut(s)	224
MspI	CCGG	1 cut(s)	11
MspR9I	CCNGG	3 cut(s)	35, 968, 1020
MunI	CAATTG	2 cut(s)	324, 453
Mva1269I	GAATGC	1 cut(s)	269
MvaI	CCWGG	3 cut(s)	35, 968, 1020
MwoI	GCNNNNNNNGC	3 cut(s)	287, 296, 494
NdeII	GATC	5 cut(s)	67, 244, 253, 770, 1076
NlaIII	CATG	3 cut(s)	94, 641, 650
NlaIV	GGNNCC	4 cut(s)	772, 946, 959, 1088
NmuCI	GTSAC	1 cut(s)	871
NsiI	ATGCAT	1 cut(s)	96
NspI	RCATGY	1 cut(s)	641
PciI	ACATGT	1 cut(s)	637
PctI	GAATGC	1 cut(s)	269
PdmI	GAANNNNTTC	1 cut(s)	962
PfeI	GAWTC	5 cut(s)	119, 791, 847, 896, 974
PfoI	TCCNGGA	1 cut(s)	33
PleI	GAGTC	5 cut(s)	33, 115, 539, 881, 944
PpsI	GAGTC	5 cut(s)	33, 115, 539, 881, 944
PscI	ACATGT	1 cut(s)	637
Psp124BI	GAGCTC	1 cut(s)	346
Psp6I	CCWGG	3 cut(s)	33, 966, 1018
PspGI	CCWGG	3 cut(s)	33, 966, 1018
PspN4I	GGNNCC	4 cut(s)	772, 946, 959, 1088
PspPI	GGNCC	4 cut(s)	394, 419, 761, 944
PstNI	CAGNNNCTG	1 cut(s)	881
PsuI	RGATCY	1 cut(s)	770
RseI	CAYNNNNRTG	2 cut(s)	99, 240
SacI	GAGCTC	1 cut(s)	346
SaqAI	TTAA	5 cut(s)	149, 159, 431, 920, 990
Sau3AI	GATC	5 cut(s)	67, 244, 253, 770, 1076
Sau96I	GGNCC	4 cut(s)	394, 419, 761, 944
SchI	GAGTC	5 cut(s)	34, 116, 540, 881, 945
ScrFI	CCNGG	3 cut(s)	35, 968, 1020
SduI	GDGCHC	1 cut(s)	346
SfaNI	GCATC	3 cut(s)	91, 774, 1059
SinI	GGWCC	2 cut(s)	419, 761
SmiMI	CAYNNNNRTG	2 cut(s)	99, 240
Sse9I	AATT	6 cut(s)	324, 453, 572, 623, 798, 856
SsiI	CCGC	1 cut(s)	212
SspI	AATATT	1 cut(s)	147
SspMI	CTAG	4 cut(s)	278, 525, 630, 1037
SstI	GAGCTC	1 cut(s)	346
StyD4I	CCNGG	3 cut(s)	33, 966, 1018
StyI	CCWWGG	1 cut(s)	726
TaaI	ACNGT	4 cut(s)	187, 501, 706, 877
TaqI	TCGA	4 cut(s)	190, 845, 939, 1075
TasI	AATT	6 cut(s)	324, 453, 572, 623, 798, 856
TfiI	GAWTC	5 cut(s)	119, 791, 847, 896, 974
Tru1I	TTAA	5 cut(s)	149, 159, 431, 920, 990
Tru9I	TTAA	5 cut(s)	149, 159, 431, 920, 990
TscAI	CASTG	3 cut(s)	178, 232, 342
TseFI	GTSAC	1 cut(s)	871
Tsp45I	GTSAC	1 cut(s)	871
TspDTI	ATGAA	5 cut(s)	79, 399, 480, 599, 851
TspRI	CASTG	3 cut(s)	178, 232, 342
VpaK11BI	GGWCC	2 cut(s)	419, 761
XapI	RAATTY	1 cut(s)	856
XceI	RCATGY	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1036
XmiI	GTMKAC	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	962
XspI	CTAG	4 cut(s)	278, 525, 630, 1037
Zsp2I	ATGCAT	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.