Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Forward (+)

62525543 .. 62528301

Gene Structure 2759 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG435800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGAAGGTCTACATGTTGTGGAATTTTCAGATTGCTATATTGAAGCGGTTGCAACGAGAAGCGTTTTCGGACTTGATGAAATTGAGGGATAGACAGGATAAAGTTGAGAAAATTGTGTCCTTGTATGGGACTTCAGGAGGAAAAGGGAGTCCTTTCCAGGAGGCCAACACCCTTATCGGGGGAGAGTTTGATCACTTGGCGGCGTTATCATTCATGCATAATGATGATGAGTCTCATCAAGAATCCGAGGCTCTTAGTCAGGCAGGAATATTAACTGGGATTAAGTCAAGGTTCAGTGTTGAAACAACTGTTCGAGAAAATGATACGCTTGTGGCGGAGTTTGTGGCCAGAGAAAAACACAAAAATGATCTCTCTGATCTTTCAGAATGCTCGCTTTCTCTAGCAAAAGTGGCATATACAGCAAATGTTAGTGATTGGTTATCTGCAATTGCAATCCCAGTGGGAGCTCAATGCAGGGATGTTGCAGTTCTTACACATCCTTCTCATCAGGGAAAGGGCCTAACTCATTTTTCATCATTTGGACCACCTCTTTTAAATGAGCGTAATGGTAGTGCAATTGGCTTGATGGTAAAAAAATCAAATGTTGTTGCTTCATTGGCACAGTTTGTTTCTGGACAAGTAGGTTCTAGTAGAGTCGGGCGCTGCTTCAGCACTTTTGGGCAAGTTGTCTGTCAACTCCCTGCAAGAACAAAGCTCTCACTTCTGGGTCTTCACCAAGTGCCTAAATTATCTAGTGAACATGTCAATCATGCAGCTTCTAACTTTGGATTAGGCGATTTGATACAACATCTATCCCCTGAGACAACAGTTGAAGCATATACTCCACCCCTGGGAACAAGCTCACAGGAAAATGTGTCAACTGGACCAACTGGATCCATCGCTCTGATGCTGGAATCCGAAATTGATGAGATTACAAAGATTGGAGGTTGGATTGAGATGAAGCAATCGAATCCCAAGAATTTAGAATGGGCTGTTACTGTATCTGATGACTCTGAAGATTCCTTTGGATGGGGAGTGAGTTTAAATGGTGGACTGGGAGTCGAAGGCCCTCAAAGTTGGAACCATTTCCAGGTTGAATCCTACTTGAAACTTAACTTGGGTAAGAGACTGAGTGTAAAGCCAGGTATCACAACACATCTAGTGGATGGCAAACCCAGAATGACTGCTCTGATGCTTCGATCTAACTGGTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

405

Amino Acids

44.11

Weight (kDa)

6.24

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	9
AciI	CCGC	3 cut(s)	46, 200, 335
AclWI	GGATC	2 cut(s)	888, 901
AcoI	YGGCCR	1 cut(s)	345
AcsI	RAATTY	2 cut(s)	22, 979
AcuI	CTGAAG	3 cut(s)	117, 652, 1035
AdeI	CACNNNGTG	1 cut(s)	739
AfiI	CCNNNNNNNGG	6 cut(s)	126, 177, 178, 851, 1029, 1090
AflIII	ACRYGT	2 cut(s)	12, 760
AgsI	TTSAA	5 cut(s)	43, 302, 833, 1097, 1108
AhdI	GACNNNNNGTC	1 cut(s)	1058
AjnI	CCWGG	4 cut(s)	156, 849, 1089, 1141
AjuI	GAANNNNNNNTTGG	4 cut(s)	1008, 1040, 1100, 1132
AluBI	AGCT	4 cut(s)	467, 715, 776, 861
AluI	AGCT	4 cut(s)	467, 715, 776, 861
Alw21I	GWGCWC	1 cut(s)	469
Alw26I	GTCTC	3 cut(s)	237, 815, 1120
AlwI	GGATC	2 cut(s)	888, 901
AoxI	GGCC	4 cut(s)	162, 345, 517, 1066
ApeKI	GCWGC	2 cut(s)	663, 773
ApoI	RAATTY	2 cut(s)	22, 979
Asp700I	GAANNNNTTC	1 cut(s)	1085
AspLEI	GCGC	1 cut(s)	663
AspS9I	GGNCC	4 cut(s)	517, 542, 884, 1067
AsuHPI	GGTGA	1 cut(s)	725
AvaII	GGWCC	2 cut(s)	542, 884
BaeI	ACNNNNGTAYC	2 cut(s)	315, 348
BalI	TGGCCA	1 cut(s)	347
BamHI	GGATCC	1 cut(s)	893
BanII	GRGCYC	1 cut(s)	469
BbsI	GAAGAC	1 cut(s)	722
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	2 cut(s)	650, 785
BccI	CCATC	4 cut(s)	580, 905, 1023, 1160
BciT130I	CCWGG	4 cut(s)	158, 851, 1091, 1143
BclI	TGATCA	1 cut(s)	190
BcoDI	GTCTC	3 cut(s)	237, 815, 1120
BfaI	CTAG	4 cut(s)	401, 648, 753, 1160
BfoI	RGCGCY	1 cut(s)	664
BisI	GCNGC	3 cut(s)	201, 664, 774
BlsI	GCNGC	3 cut(s)	202, 665, 775
Bme1390I	CCNGG	4 cut(s)	158, 851, 1091, 1143
Bme18I	GGWCC	2 cut(s)	542, 884
BmeRI	GACNNNNNGTC	1 cut(s)	1058
BmgT120I	GGNCC	4 cut(s)	517, 542, 884, 1067
BmiI	GGNNCC	3 cut(s)	895, 1082, 1211
BmrFI	CCNGG	4 cut(s)	158, 851, 1091, 1143
BmrI	ACTGGG	3 cut(s)	285, 452, 1064
BmsI	GCATC	2 cut(s)	897, 1182
BmuI	ACTGGG	3 cut(s)	285, 452, 1064
BpiI	GAAGAC	1 cut(s)	722
BsaJI	CCNNGG	3 cut(s)	246, 849, 850
Bsc4I	CCNNNNNNNGG	6 cut(s)	126, 177, 178, 851, 1029, 1090
Bse1I	ACTGG	6 cut(s)	280, 458, 886, 895, 1059, 1211
BseBI	CCWGG	4 cut(s)	158, 851, 1091, 1143
BseDI	CCNNGG	3 cut(s)	246, 849, 850
BseGI	GGATG	4 cut(s)	484, 496, 1034, 1171
BseLI	CCNNNNNNNGG	6 cut(s)	126, 177, 178, 851, 1029, 1090
BseMII	CTCAG	2 cut(s)	810, 1121
BseNI	ACTGG	6 cut(s)	280, 458, 886, 895, 1059, 1211
BseXI	GCAGC	2 cut(s)	650, 785
BshFI	GGCC	4 cut(s)	164, 347, 519, 1068
BsiHKAI	GWGCWC	1 cut(s)	469
BslFI	GGGAC	1 cut(s)	142
BslI	CCNNNNNNNGG	6 cut(s)	126, 177, 178, 851, 1029, 1090
BsmAI	GTCTC	3 cut(s)	237, 815, 1120
BsmFI	GGGAC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	4 cut(s)	164, 347, 519, 1068
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	5 cut(s)	190, 367, 376, 893, 1199
BspACI	CCGC	3 cut(s)	46, 200, 335
BspANI	GGCC	4 cut(s)	164, 347, 519, 1068
BspCNI	CTCAG	2 cut(s)	811, 1122
BspLI	GGNNCC	3 cut(s)	895, 1082, 1211
BspPI	GGATC	2 cut(s)	888, 901
BsrI	ACTGG	6 cut(s)	280, 458, 886, 895, 1059, 1211
BssECI	CCNNGG	3 cut(s)	246, 849, 850
BssMI	GATC	5 cut(s)	190, 367, 376, 893, 1199
Bst2UI	CCWGG	4 cut(s)	158, 851, 1091, 1143
Bst4CI	ACNGT	4 cut(s)	310, 624, 829, 1000
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	3 cut(s)	254, 819, 1130
BstF5I	GGATG	4 cut(s)	484, 496, 1034, 1171
BstH2I	RGCGCY	1 cut(s)	664
BstHHI	GCGC	1 cut(s)	663
BstKTI	GATC	5 cut(s)	193, 370, 379, 896, 1202
BstMAI	GTCTC	3 cut(s)	237, 815, 1120
BstMBI	GATC	5 cut(s)	190, 367, 376, 893, 1199
BstMWI	GCNNNNNNNGC	4 cut(s)	410, 419, 617, 669
BstNI	CCWGG	4 cut(s)	158, 851, 1091, 1143
BstNSI	RCATGY	2 cut(s)	16, 764
BstSCI	CCNGG	4 cut(s)	156, 849, 1089, 1141
BstV1I	GCAGC	2 cut(s)	650, 785
BstV2I	GAAGAC	1 cut(s)	722
BstX2I	RGATCY	1 cut(s)	893
BstYI	RGATCY	1 cut(s)	893
BsuRI	GGCC	4 cut(s)	164, 347, 519, 1068
BtgZI	GCGATG	1 cut(s)	883
BtsCI	GGATG	4 cut(s)	484, 496, 1034, 1171
BtsIMutI	CAGTG	2 cut(s)	301, 465
Cac8I	GCNNGC	1 cut(s)	392
CfoI	GCGC	1 cut(s)	663
Cfr13I	GGNCC	4 cut(s)	517, 542, 884, 1067
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	4 cut(s)	13, 214, 761, 770
DdeI	CTNAG	3 cut(s)	254, 819, 1130
DpnI	GATC	5 cut(s)	192, 369, 378, 895, 1201
DpnII	GATC	5 cut(s)	190, 367, 376, 893, 1199
DraI	TTTAAA	2 cut(s)	555, 1044
DraIII	CACNNNGTG	1 cut(s)	739
DriI	GACNNNNNGTC	1 cut(s)	1058
EaeI	YGGCCR	1 cut(s)	345
Eam1105I	GACNNNNNGTC	1 cut(s)	1058
EciI	GGCGGA	1 cut(s)	350
Ecl136II	GAGCTC	1 cut(s)	467
Eco24I	GRGCYC	1 cut(s)	469
Eco47I	GGWCC	2 cut(s)	542, 884
Eco53kI	GAGCTC	1 cut(s)	467
Eco57I	CTGAAG	3 cut(s)	117, 652, 1035
EcoICRI	GAGCTC	1 cut(s)	467
EcoO109I	RGGNCCY	2 cut(s)	517, 1067
EcoRII	CCWGG	4 cut(s)	156, 849, 1089, 1141
EcoT22I	ATGCAT	1 cut(s)	219
EcoT38I	GRGCYC	1 cut(s)	469
FaeI	CATG	4 cut(s)	16, 217, 764, 773
FaqI	GGGAC	1 cut(s)	142
FatI	CATG	4 cut(s)	12, 213, 760, 769
FbaI	TGATCA	1 cut(s)	190
FblI	GTMKAC	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	201, 664, 774
FokI	GGATG	4 cut(s)	483, 491, 1041, 1178
FriOI	GRGCYC	1 cut(s)	469
Fsp4HI	GCNGC	3 cut(s)	201, 664, 774
FspBI	CTAG	4 cut(s)	401, 648, 753, 1160
GlaI	GCGC	1 cut(s)	662
GluI	GCNGC	3 cut(s)	201, 664, 774
HaeII	RGCGCY	1 cut(s)	664
HaeIII	GGCC	4 cut(s)	164, 347, 519, 1068
HhaI	GCGC	1 cut(s)	663
Hin1II	CATG	4 cut(s)	16, 217, 764, 773
Hin6I	GCGC	1 cut(s)	661
HinP1I	GCGC	1 cut(s)	661
HincII	GTYRAC	2 cut(s)	695, 879
HindII	GTYRAC	2 cut(s)	695, 879
HphI	GGTGA	1 cut(s)	725
Hpy166II	GTNNAC	5 cut(s)	10, 695, 758, 879, 1052
Hpy188III	TCNNGA	4 cut(s)	135, 239, 314, 633
Hpy8I	GTNNAC	5 cut(s)	10, 695, 758, 879, 1052
HpyAV	CCTTC	2 cut(s)	510, 1058
HpyCH4III	ACNGT	4 cut(s)	310, 624, 829, 1000
HpyCH4V	TGCA	9 cut(s)	52, 217, 446, 452, 474, 485, 575, 704, 773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	410, 419, 617, 669
HpyF3I	CTNAG	3 cut(s)	254, 819, 1130
Hsp92II	CATG	4 cut(s)	16, 217, 764, 773
HspAI	GCGC	1 cut(s)	661
Ksp22I	TGATCA	1 cut(s)	190
Kzo9I	GATC	5 cut(s)	190, 367, 376, 893, 1199
LmnI	GCTCC	1 cut(s)	464
Lsp1109I	GCAGC	2 cut(s)	650, 785
LweI	GCATC	2 cut(s)	897, 1182
MaeI	CTAG	4 cut(s)	401, 648, 753, 1160
MaeIII	GTNAC	1 cut(s)	994
MalI	GATC	5 cut(s)	192, 369, 378, 895, 1201
MboI	GATC	5 cut(s)	190, 367, 376, 893, 1199
MboII	GAAGA	2 cut(s)	722, 1028
MfeI	CAATTG	2 cut(s)	447, 576
MflI	RGATCY	1 cut(s)	893
MhlI	GDGCHC	1 cut(s)	469
MlsI	TGGCCA	1 cut(s)	347
MluCI	AATT	8 cut(s)	22, 80, 111, 447, 576, 746, 921, 979
MluNI	TGGCCA	1 cut(s)	347
MlyI	GAGTC	5 cut(s)	157, 239, 663, 1004, 1068
MmeI	TCCRAC	2 cut(s)	929, 1058
MnlI	CCTC	7 cut(s)	78, 131, 154, 241, 558, 938, 1080
Mox20I	TGGCCA	1 cut(s)	347
Mph1103I	ATGCAT	1 cut(s)	219
MroXI	GAANNNNTTC	1 cut(s)	1085
MscI	TGGCCA	1 cut(s)	347
MseI	TTAA	5 cut(s)	272, 282, 554, 1043, 1113
MslI	CAYNNNNRTG	2 cut(s)	222, 363
Msp20I	TGGCCA	1 cut(s)	347
MspR9I	CCNGG	4 cut(s)	158, 851, 1091, 1143
MunI	CAATTG	2 cut(s)	447, 576
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	4 cut(s)	158, 851, 1091, 1143
MwoI	GCNNNNNNNGC	4 cut(s)	410, 419, 617, 669
NdeII	GATC	5 cut(s)	190, 367, 376, 893, 1199
NlaIII	CATG	4 cut(s)	16, 217, 764, 773
NlaIV	GGNNCC	3 cut(s)	895, 1082, 1211
NsiI	ATGCAT	1 cut(s)	219
NspI	RCATGY	2 cut(s)	16, 764
PasI	CCCWGGG	1 cut(s)	850
PciI	ACATGT	2 cut(s)	12, 760
PctI	GAATGC	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	1085
PfeI	GAWTC	5 cut(s)	242, 914, 970, 1019, 1097
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	3 cut(s)	202, 665, 775
PleI	GAGTC	5 cut(s)	156, 238, 662, 1004, 1067
PpsI	GAGTC	5 cut(s)	156, 238, 662, 1004, 1067
PscI	ACATGT	2 cut(s)	12, 760
Psp124BI	GAGCTC	1 cut(s)	469
Psp6I	CCWGG	4 cut(s)	156, 849, 1089, 1141
PspGI	CCWGG	4 cut(s)	156, 849, 1089, 1141
PspN4I	GGNNCC	3 cut(s)	895, 1082, 1211
PspPI	GGNCC	4 cut(s)	517, 542, 884, 1067
PsuI	RGATCY	1 cut(s)	893
RseI	CAYNNNNRTG	2 cut(s)	222, 363
SacI	GAGCTC	1 cut(s)	469
SaqAI	TTAA	5 cut(s)	272, 282, 554, 1043, 1113
SatI	GCNGC	3 cut(s)	201, 664, 774
Sau3AI	GATC	5 cut(s)	190, 367, 376, 893, 1199
Sau96I	GGNCC	4 cut(s)	517, 542, 884, 1067
SchI	GAGTC	5 cut(s)	157, 239, 663, 1004, 1068
ScrFI	CCNGG	4 cut(s)	158, 851, 1091, 1143
SduI	GDGCHC	1 cut(s)	469
SfaNI	GCATC	2 cut(s)	897, 1182
SinI	GGWCC	2 cut(s)	542, 884
SmiMI	CAYNNNNRTG	2 cut(s)	222, 363
Sse9I	AATT	8 cut(s)	22, 80, 111, 447, 576, 746, 921, 979
SsiI	CCGC	3 cut(s)	46, 200, 335
SspI	AATATT	1 cut(s)	270
SspMI	CTAG	4 cut(s)	401, 648, 753, 1160
SstI	GAGCTC	1 cut(s)	469
StyD4I	CCNGG	4 cut(s)	156, 849, 1089, 1141
TaaI	ACNGT	4 cut(s)	310, 624, 829, 1000
TaqI	TCGA	4 cut(s)	313, 968, 1062, 1198
TasI	AATT	8 cut(s)	22, 80, 111, 447, 576, 746, 921, 979
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	5 cut(s)	242, 914, 970, 1019, 1097
Tru1I	TTAA	5 cut(s)	272, 282, 554, 1043, 1113
Tru9I	TTAA	5 cut(s)	272, 282, 554, 1043, 1113
TscAI	CASTG	2 cut(s)	301, 465
TseI	GCWGC	2 cut(s)	663, 773
TspDTI	ATGAA	6 cut(s)	17, 92, 202, 522, 603, 974
TspRI	CASTG	2 cut(s)	301, 465
VpaK11BI	GGWCC	2 cut(s)	542, 884
XapI	RAATTY	2 cut(s)	22, 979
XceI	RCATGY	2 cut(s)	16, 764
XmiI	GTMKAC	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	1085
XspI	CTAG	4 cut(s)	401, 648, 753, 1160
Zsp2I	ATGCAT	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.