Rorug06G0321100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004161
Physical Location & Seq
Reverse (-)
47278978 .. 47279934
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0321100.1

Sequence Viewer

Length: 786 bp
ATGATGGACGCCGACTGGTCTGATCTTCCTCCAGATCTTGTTGTATCCATCGCCAAGAGAATTGTCTGCTTGGAAGATTTTGCTGCTTTTGGTGCAGCTTGTAAATCATGGAGATCAAAAGCTACCAAGGAAAACTTTACTGGTGAATTCAGTCATCAAGTTCCAATCCTTATGCTCCCAATGATCGAAGACGACATAAACCCTTTGTGTTATAGTATCACAAAAGGTAGATTCAACAAACTCAACCTGCCAGAAGCTGAAGGCAACCAGTGTTTTTCTTCGCTAGGTTGGCTCCTAATTGCATATGATCATGCTTGGAAATTGACTCTATTGCATCCTTTAAATCATACCCGAATCGAGCTGCCAAGATTTTCCAACAGTAATTACTGGAGAAGATGGAAGTATCCAACCTCCCGTCCTCAAGTCATAAGTAAGTTTGGCCTGTTATCAAGCCCTTCTCAGTCATCGGATTACACTGTCATCCTCATATATGAAAGGAAACATTTGGCATTTTGCAGACCAGGAAAGGATGAAAATTGGGAAAGTATTCGTGTCAGTTCTTCTCTAGATATAACTATAGTGGATCTAACTTGTTTCAATGGAGAATGTTATGTTGTGGACTATTTGGGGGAAGTTTTTGTTCTTGATTTTGTAAATAGAATCAAAGTGAGGAGAGTTGCTGCACCACCAATGCCAGGTTGTTCTAGTCGTTACAAACTATACCTTGTGGAATCAGCAGGGGCCTTACTGGTGGTTTTATGTTATGTGTGTTCAAGGAAAACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

261

Amino Acids

29.81

Weight (kDa)

8.28

Isoelectric Point (pI)

43.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 71 - 253 4.2e-30 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
AclWI GGATC 1 cut(s) 591
AcsI RAATTY 1 cut(s) 146
AcuI CTGAAG 1 cut(s) 279
AcyI GRCGYC 1 cut(s) 9
AfiI CCNNNNNNNGG 1 cut(s) 695
AgsI TTSAA 3 cut(s) 235, 598, 774
AjnI CCWGG 2 cut(s) 520, 694
AluBI AGCT 4 cut(s) 98, 122, 257, 361
AluI AGCT 4 cut(s) 98, 122, 257, 361
AlwI GGATC 1 cut(s) 591
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 2 cut(s) 439, 741
ApeKI GCWGC 4 cut(s) 83, 95, 361, 680
ApoI RAATTY 1 cut(s) 146
Asp700I GAANNNNTTC 1 cut(s) 546
AspS9I GGNCC 1 cut(s) 741
AsuHPI GGTGA 1 cut(s) 155
BbsI GAAGAC 1 cut(s) 195
BbvI GCAGC 4 cut(s) 70, 107, 348, 667
BccI CCATC 2 cut(s) 56, 390
BciT130I CCWGG 2 cut(s) 522, 696
BciVI GTATCC 2 cut(s) 55, 414
BclI TGATCA 1 cut(s) 307
BfaI CTAG 3 cut(s) 284, 566, 705
BfmI CTRYAG 1 cut(s) 576
BfuAI ACCTGC 1 cut(s) 255
BfuI GTATCC 2 cut(s) 55, 414
BglII AGATCT 1 cut(s) 34
BisI GCNGC 4 cut(s) 84, 96, 362, 681
BlsI GCNGC 4 cut(s) 85, 97, 363, 682
Bme1390I CCNGG 2 cut(s) 522, 696
BmgT120I GGNCC 1 cut(s) 741
BmiI GGNNCC 2 cut(s) 293, 742
BmrFI CCNGG 2 cut(s) 522, 696
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 195
BpmI CTGGAG 2 cut(s) 15, 409
BpuEI CTTGAG 1 cut(s) 405
BsaHI GRCGYC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 126
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse1I ACTGG 5 cut(s) 20, 145, 268, 392, 753
BseBI CCWGG 2 cut(s) 522, 696
BseDI CCNNGG 1 cut(s) 126
BseGI GGATG 3 cut(s) 334, 480, 535
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMII CTCAG 1 cut(s) 473
BseNI ACTGG 5 cut(s) 20, 145, 268, 392, 753
BseRI GAGGAG 1 cut(s) 685
BseXI GCAGC 4 cut(s) 70, 107, 348, 667
BsgI GTGCAG 2 cut(s) 114, 666
BshFI GGCC 2 cut(s) 441, 743
BslI CCNNNNNNNGG 1 cut(s) 695
BsnI GGCC 2 cut(s) 441, 743
Bsp143I GATC 6 cut(s) 22, 34, 113, 183, 307, 583
BspANI GGCC 2 cut(s) 441, 743
BspCNI CTCAG 1 cut(s) 472
BspLI GGNNCC 2 cut(s) 293, 742
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 1 cut(s) 591
BsrI ACTGG 5 cut(s) 20, 145, 268, 392, 753
BssECI CCNNGG 1 cut(s) 126
BssMI GATC 6 cut(s) 22, 34, 113, 183, 307, 583
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 126
Bst2UI CCWGG 2 cut(s) 522, 696
Bst4CI ACNGT 2 cut(s) 380, 478
BstACI GRCGYC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 459
BstF5I GGATG 3 cut(s) 334, 480, 535
BstKTI GATC 6 cut(s) 25, 37, 116, 186, 310, 586
BstMBI GATC 6 cut(s) 22, 34, 113, 183, 307, 583
BstMWI GCNNNNNNNGC 2 cut(s) 92, 289
BstNI CCWGG 2 cut(s) 522, 696
BstSCI CCNGG 2 cut(s) 520, 694
BstSFI CTRYAG 1 cut(s) 576
BstV1I GCAGC 4 cut(s) 70, 107, 348, 667
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 2 cut(s) 34, 583
BstYI RGATCY 2 cut(s) 34, 583
BsuI GTATCC 2 cut(s) 55, 414
BsuRI GGCC 2 cut(s) 441, 743
BtgZI GCGATG 1 cut(s) 34
BtsCI GGATG 3 cut(s) 334, 480, 535
BtsIMutI CAGTG 2 cut(s) 275, 474
BveI ACCTGC 1 cut(s) 255
CaiI CAGNNNCTG 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 741
CseI GACGC 1 cut(s) 17
CviAII CATG 2 cut(s) 108, 311
CviJI RGCY 8 cut(s) 98, 122, 257, 292, 361, 441, 453, 743
CviKI_1 RGCY 8 cut(s) 98, 122, 257, 292, 361, 441, 453, 743
DdeI CTNAG 1 cut(s) 459
DpnI GATC 6 cut(s) 24, 36, 115, 185, 309, 585
DpnII GATC 6 cut(s) 22, 34, 113, 183, 307, 583
DraI TTTAAA 1 cut(s) 342
Eco130I CCWWGG 1 cut(s) 126
Eco57I CTGAAG 1 cut(s) 279
EcoO109I RGGNCCY 1 cut(s) 741
EcoRI GAATTC 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 520, 694
EcoT14I CCWWGG 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 126
FaeI CATG 2 cut(s) 111, 314
FalI AAGNNNNNCTT 2 cut(s) 119, 151
FatI CATG 2 cut(s) 107, 310
FauNDI CATATG 1 cut(s) 304
FbaI TGATCA 1 cut(s) 307
Fnu4HI GCNGC 4 cut(s) 84, 96, 362, 681
FokI GGATG 3 cut(s) 321, 467, 542
Fsp4HI GCNGC 4 cut(s) 84, 96, 362, 681
FspBI CTAG 3 cut(s) 284, 566, 705
GluI GCNGC 4 cut(s) 84, 96, 362, 681
GsuI CTGGAG 2 cut(s) 15, 409
HaeIII GGCC 2 cut(s) 441, 743
HgaI GACGC 1 cut(s) 17
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 2 cut(s) 111, 314
HinfI GANTC 5 cut(s) 231, 325, 354, 660, 731
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 619
Hpy188I TCNGA 2 cut(s) 22, 469
Hpy188III TCNNGA 3 cut(s) 32, 566, 644
Hpy8I GTNNAC 1 cut(s) 619
HpyAV CCTTC 2 cut(s) 254, 465
HpyCH4III ACNGT 2 cut(s) 380, 478
HpyCH4V TGCA 5 cut(s) 95, 302, 334, 516, 683
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 289
HpyF3I CTNAG 1 cut(s) 459
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 2 cut(s) 111, 314
Ksp22I TGATCA 1 cut(s) 307
Kzo9I GATC 6 cut(s) 22, 34, 113, 183, 307, 583
LmnI GCTCC 2 cut(s) 180, 297
Lsp1109I GCAGC 4 cut(s) 70, 107, 348, 667
LweI GCATC 1 cut(s) 343
MaeI CTAG 3 cut(s) 284, 566, 705
MaeIII GTNAC 1 cut(s) 710
MalI GATC 6 cut(s) 24, 36, 115, 185, 309, 585
MboI GATC 6 cut(s) 22, 34, 113, 183, 307, 583
MboII GAAGA 6 cut(s) 17, 86, 200, 270, 405, 552
MflI RGATCY 2 cut(s) 34, 583
MluCI AATT 6 cut(s) 60, 146, 297, 320, 382, 535
MlyI GAGTC 1 cut(s) 319
MmeI TCCRAC 2 cut(s) 399, 431
MnlI CCTC 5 cut(s) 39, 421, 429, 494, 663
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 1 cut(s) 341
MspR9I CCNGG 2 cut(s) 522, 696
MvaI CCWGG 2 cut(s) 522, 696
MwoI GCNNNNNNNGC 2 cut(s) 92, 289
NdeI CATATG 1 cut(s) 304
NdeII GATC 6 cut(s) 22, 34, 113, 183, 307, 583
NlaIII CATG 2 cut(s) 111, 314
NlaIV GGNNCC 2 cut(s) 293, 742
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 4 cut(s) 231, 354, 660, 731
PkrI GCNGC 4 cut(s) 85, 97, 363, 682
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
Psp6I CCWGG 2 cut(s) 520, 694
PspGI CCWGG 2 cut(s) 520, 694
PspN4I GGNNCC 2 cut(s) 293, 742
PspPI GGNCC 1 cut(s) 741
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 2 cut(s) 34, 583
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 4 cut(s) 84, 96, 362, 681
Sau3AI GATC 6 cut(s) 22, 34, 113, 183, 307, 583
Sau96I GGNCC 1 cut(s) 741
SchI GAGTC 1 cut(s) 319
ScrFI CCNGG 2 cut(s) 522, 696
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 1 cut(s) 576
SmlI CTYRAG 1 cut(s) 420
SmoI CTYRAG 1 cut(s) 420
Sse9I AATT 6 cut(s) 60, 146, 297, 320, 382, 535
SspMI CTAG 3 cut(s) 284, 566, 705
StyD4I CCNGG 2 cut(s) 520, 694
StyI CCWWGG 1 cut(s) 126
TaaI ACNGT 2 cut(s) 380, 478
TaqI TCGA 2 cut(s) 186, 357
TasI AATT 6 cut(s) 60, 146, 297, 320, 382, 535
TfiI GAWTC 4 cut(s) 231, 354, 660, 731
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 2 cut(s) 275, 481
TseI GCWGC 4 cut(s) 83, 95, 361, 680
TspDTI ATGAA 2 cut(s) 507, 546
TspRI CASTG 2 cut(s) 275, 481
XapI RAATTY 1 cut(s) 146
XbaI TCTAGA 1 cut(s) 565
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 3 cut(s) 284, 566, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.