Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Forward (+)

62012688 .. 62014761

Gene Structure 2074 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G037710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGAAGCCAAAGCTTTTGCAGCAGACAAGTTTAAAGCTCTGACGAAATCCACCCAGGACTTCTTCGACAGTCTCATCCATGGGCCTCCTAAACCTCCACCTCGCCGCAATAATCCGATTGCTATATTGAAGCGGTTGCAACGAGAAGCGTTTTCGGACTTGATGAAATTGAGGGATAGACAGGATAAAGTTGAGAAAATTGTGTCCTTGTATGGGACTTCAGGAGGAAAAGGGAGTCCTTTCCAGGAGGCCAACACCCTTATCAGGGGAGAGTTTGATCACTTGGGGGCGTTATCATTCATGCATAATGATGATGAGTCTCATCAAGAATCCGAGGCTCTTAGTCAGGCAGGAATATTAACTGGGATTAAGTCAAGGTTCAGTGTTGAAACAACTGTTCGAGAAAATGATACGCTTGTGGCGGAGTTTGTGGCCAGAGAAAAACACAAAAATGATCTCTCTGATCTTTCAGAATGCTCGCTTTCTCTAGCAAAAGTGGCATATACAGCAAATGTTAGTGATTGGTTATCTGCAATTGCAATCCCAGTGGGAGCTCAATGCAGGGATGTCGCAGTTCTTACAAATCCTTCTCATCAGGGAAAGGGCCTAACTCATTTTTCATCATTTGGACCACCTCTTTTAAATGAGCGTAATGGTAGTGCAATTGGCTTAATGGTAAAAAAATCAAATGTTGTTGCTTCATTGGCACAGTTTGTTTCTGGACAAGTAGGTTCTAGTAGAGTCGGGCGCTGCTTCAGCACTTTTGGGCAAGTTGTCTGTCAACTCCCTGCAAGAACAAAGCTCTCACTTCTGGGTCTTCACCAAGCATTATCTAGTGAACATGTCAATCATGTAGCTTCTAACTTTGGATTAGGCGATTTGATACAACATCTATCCCCTGAGACAACAGTTGAAGCATATACTCCACCCCTGGGAACAAGCTCACAGGAAAATGTGTCAACTGGATCCATTGCTCTGATGCTGGAATCCGAAATTGATGAGATTACAAAGATTGGAGGTTGGATTGAGGTGAAGCAATCGAATCCCAAGAATTTAGAATGGGCTGTTACTGTATCTGATGACTCTGAAGATTCCTTTGGATGGGGAGTGAGTTTAAATGGTGGACTGGGAGTCGAAGGCCCCCAAAGTTGGAACCATTTCCAGGTTGAATCCTACTTGAAACTTAACTTGGGTAAGAGACTGAGTGTAAAGCCAGGTATCACAACACATCTAGTGGATGGCAAACCCAGAATGACTGCTCTGATGCTTCGATCTAACTGGTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

429

Amino Acids

46.67

Weight (kDa)

6.51

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	106, 133, 422
AclWI	GGATC	2 cut(s)	960, 973
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	1051
AcuI	CTGAAG	3 cut(s)	204, 739, 1107
AfiI	CCNNNNNNNGG	7 cut(s)	213, 264, 265, 932, 1101, 1149, 1162
AflIII	ACRYGT	1 cut(s)	841
AgsI	TTSAA	5 cut(s)	130, 389, 914, 1169, 1180
AhdI	GACNNNNNGTC	1 cut(s)	1130
AjnI	CCWGG	5 cut(s)	54, 243, 930, 1161, 1213
AjuI	GAANNNNNNNTTGG	4 cut(s)	1080, 1112, 1172, 1204
AluBI	AGCT	6 cut(s)	14, 38, 554, 802, 857, 942
AluI	AGCT	6 cut(s)	14, 38, 554, 802, 857, 942
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	4 cut(s)	77, 324, 896, 1192
AlwI	GGATC	2 cut(s)	960, 973
AoxI	GGCC	5 cut(s)	83, 249, 432, 604, 1138
ApeKI	GCWGC	2 cut(s)	20, 750
ApoI	RAATTY	1 cut(s)	1051
Asp700I	GAANNNNTTC	1 cut(s)	1157
AspLEI	GCGC	1 cut(s)	750
AspS9I	GGNCC	4 cut(s)	83, 604, 629, 1139
AsuHPI	GGTGA	2 cut(s)	812, 1042
AvaII	GGWCC	1 cut(s)	629
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BalI	TGGCCA	1 cut(s)	434
BamHI	GGATCC	1 cut(s)	965
BanII	GRGCYC	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	809
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	2 cut(s)	32, 737
BccI	CCATC	2 cut(s)	1095, 1232
BcgI	CGANNNNNNTGC	2 cut(s)	550, 584
BciT130I	CCWGG	5 cut(s)	56, 245, 932, 1163, 1215
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	4 cut(s)	77, 324, 896, 1192
BfaI	CTAG	4 cut(s)	488, 735, 834, 1232
BfoI	RGCGCY	1 cut(s)	751
BisI	GCNGC	3 cut(s)	21, 106, 751
BlsI	GCNGC	3 cut(s)	22, 107, 752
Bme1390I	CCNGG	5 cut(s)	56, 245, 932, 1163, 1215
Bme18I	GGWCC	1 cut(s)	629
BmeRI	GACNNNNNGTC	1 cut(s)	1130
BmgT120I	GGNCC	4 cut(s)	83, 604, 629, 1139
BmiI	GGNNCC	4 cut(s)	967, 1141, 1154, 1283
BmrFI	CCNGG	5 cut(s)	56, 245, 932, 1163, 1215
BmrI	ACTGGG	3 cut(s)	372, 539, 1136
BmsI	GCATC	2 cut(s)	969, 1254
BmuI	ACTGGG	3 cut(s)	372, 539, 1136
BpiI	GAAGAC	1 cut(s)	809
BsaJI	CCNNGG	5 cut(s)	54, 79, 333, 930, 931
Bsc4I	CCNNNNNNNGG	7 cut(s)	213, 264, 265, 932, 1101, 1149, 1162
Bse1I	ACTGG	5 cut(s)	367, 545, 967, 1131, 1283
Bse3DI	GCAATG	1 cut(s)	969
BseBI	CCWGG	5 cut(s)	56, 245, 932, 1163, 1215
BseDI	CCNNGG	5 cut(s)	54, 79, 333, 930, 931
BseGI	GGATG	4 cut(s)	75, 571, 1106, 1243
BseLI	CCNNNNNNNGG	7 cut(s)	213, 264, 265, 932, 1101, 1149, 1162
BseMI	GCAATG	1 cut(s)	969
BseMII	CTCAG	2 cut(s)	891, 1193
BseNI	ACTGG	5 cut(s)	367, 545, 967, 1131, 1283
BseXI	GCAGC	2 cut(s)	32, 737
BshFI	GGCC	5 cut(s)	85, 251, 434, 606, 1140
BsiHKAI	GWGCWC	1 cut(s)	556
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	7 cut(s)	213, 264, 265, 932, 1101, 1149, 1162
BsmAI	GTCTC	4 cut(s)	77, 324, 896, 1192
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	5 cut(s)	85, 251, 434, 606, 1140
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	5 cut(s)	277, 454, 463, 965, 1271
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	3 cut(s)	106, 133, 422
BspANI	GGCC	5 cut(s)	85, 251, 434, 606, 1140
BspCNI	CTCAG	2 cut(s)	892, 1194
BspLI	GGNNCC	4 cut(s)	967, 1141, 1154, 1283
BspPI	GGATC	2 cut(s)	960, 973
BsrDI	GCAATG	1 cut(s)	969
BsrI	ACTGG	5 cut(s)	367, 545, 967, 1131, 1283
BssECI	CCNNGG	5 cut(s)	54, 79, 333, 930, 931
BssMI	GATC	5 cut(s)	277, 454, 463, 965, 1271
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	5 cut(s)	56, 245, 932, 1163, 1215
Bst4CI	ACNGT	5 cut(s)	71, 397, 711, 910, 1072
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	3 cut(s)	341, 900, 1202
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	4 cut(s)	75, 571, 1106, 1243
BstH2I	RGCGCY	1 cut(s)	751
BstHHI	GCGC	1 cut(s)	750
BstKTI	GATC	5 cut(s)	280, 457, 466, 968, 1274
BstMAI	GTCTC	4 cut(s)	77, 324, 896, 1192
BstMBI	GATC	5 cut(s)	277, 454, 463, 965, 1271
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 497, 506, 704, 756
BstNI	CCWGG	5 cut(s)	56, 245, 932, 1163, 1215
BstNSI	RCATGY	1 cut(s)	845
BstSCI	CCNGG	5 cut(s)	54, 243, 930, 1161, 1213
BstV1I	GCAGC	2 cut(s)	32, 737
BstV2I	GAAGAC	1 cut(s)	809
BstX2I	RGATCY	1 cut(s)	965
BstYI	RGATCY	1 cut(s)	965
BsuRI	GGCC	5 cut(s)	85, 251, 434, 606, 1140
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	4 cut(s)	75, 571, 1106, 1243
BtsIMutI	CAGTG	2 cut(s)	388, 552
Cac8I	GCNNGC	1 cut(s)	479
CfoI	GCGC	1 cut(s)	750
Cfr13I	GGNCC	4 cut(s)	83, 604, 629, 1139
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviAII	CATG	4 cut(s)	80, 301, 842, 851
DdeI	CTNAG	3 cut(s)	341, 900, 1202
DpnI	GATC	5 cut(s)	279, 456, 465, 967, 1273
DpnII	GATC	5 cut(s)	277, 454, 463, 965, 1271
DraI	TTTAAA	3 cut(s)	34, 642, 1116
DriI	GACNNNNNGTC	1 cut(s)	1130
EaeI	YGGCCR	1 cut(s)	432
Eam1105I	GACNNNNNGTC	1 cut(s)	1130
EciI	GGCGGA	1 cut(s)	437
Ecl136II	GAGCTC	1 cut(s)	554
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	629
Eco53kI	GAGCTC	1 cut(s)	554
Eco57I	CTGAAG	3 cut(s)	204, 739, 1107
EcoICRI	GAGCTC	1 cut(s)	554
EcoO109I	RGGNCCY	2 cut(s)	604, 1139
EcoRII	CCWGG	5 cut(s)	54, 243, 930, 1161, 1213
EcoT14I	CCWWGG	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	4 cut(s)	83, 304, 845, 854
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	4 cut(s)	79, 300, 841, 850
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	21, 106, 751
FokI	GGATG	4 cut(s)	62, 578, 1113, 1250
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	3 cut(s)	21, 106, 751
FspBI	CTAG	4 cut(s)	488, 735, 834, 1232
GlaI	GCGC	1 cut(s)	749
GluI	GCNGC	3 cut(s)	21, 106, 751
HaeII	RGCGCY	1 cut(s)	751
HaeIII	GGCC	5 cut(s)	85, 251, 434, 606, 1140
HhaI	GCGC	1 cut(s)	750
Hin1II	CATG	4 cut(s)	83, 304, 845, 854
Hin6I	GCGC	1 cut(s)	748
HinP1I	GCGC	1 cut(s)	748
HincII	GTYRAC	2 cut(s)	782, 960
HindII	GTYRAC	2 cut(s)	782, 960
HindIII	AAGCTT	1 cut(s)	12
HphI	GGTGA	2 cut(s)	812, 1042
Hpy166II	GTNNAC	4 cut(s)	782, 839, 960, 1124
Hpy188III	TCNNGA	4 cut(s)	222, 326, 401, 720
Hpy8I	GTNNAC	4 cut(s)	782, 839, 960, 1124
HpyAV	CCTTC	2 cut(s)	597, 1130
HpyCH4III	ACNGT	5 cut(s)	71, 397, 711, 910, 1072
HpyCH4V	TGCA	8 cut(s)	20, 139, 304, 533, 539, 561, 662, 791
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 497, 506, 704, 756
HpyF3I	CTNAG	3 cut(s)	341, 900, 1202
Hsp92II	CATG	4 cut(s)	83, 304, 845, 854
HspAI	GCGC	1 cut(s)	748
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	277, 454, 463, 965, 1271
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	2 cut(s)	32, 737
LweI	GCATC	2 cut(s)	969, 1254
MaeI	CTAG	4 cut(s)	488, 735, 834, 1232
MaeIII	GTNAC	1 cut(s)	1066
MalI	GATC	5 cut(s)	279, 456, 465, 967, 1273
MboI	GATC	5 cut(s)	277, 454, 463, 965, 1271
MboII	GAAGA	3 cut(s)	55, 809, 1100
MfeI	CAATTG	2 cut(s)	534, 663
MflI	RGATCY	1 cut(s)	965
MhlI	GDGCHC	1 cut(s)	556
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	6 cut(s)	167, 198, 534, 663, 993, 1051
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	5 cut(s)	244, 326, 750, 1076, 1140
MmeI	TCCRAC	2 cut(s)	1001, 1130
Mox20I	TGGCCA	1 cut(s)	434
Mph1103I	ATGCAT	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	1157
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	7 cut(s)	33, 359, 369, 641, 671, 1115, 1185
MslI	CAYNNNNRTG	2 cut(s)	309, 450
Msp20I	TGGCCA	1 cut(s)	434
MspR9I	CCNGG	5 cut(s)	56, 245, 932, 1163, 1215
MunI	CAATTG	2 cut(s)	534, 663
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	5 cut(s)	56, 245, 932, 1163, 1215
MwoI	GCNNNNNNNGC	5 cut(s)	20, 497, 506, 704, 756
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	5 cut(s)	277, 454, 463, 965, 1271
NlaIII	CATG	4 cut(s)	83, 304, 845, 854
NlaIV	GGNNCC	4 cut(s)	967, 1141, 1154, 1283
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	845
PasI	CCCWGGG	1 cut(s)	931
PciI	ACATGT	1 cut(s)	841
PctI	GAATGC	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	1157
PfeI	GAWTC	5 cut(s)	329, 986, 1042, 1091, 1169
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	3 cut(s)	22, 107, 752
PleI	GAGTC	5 cut(s)	243, 325, 749, 1076, 1139
PpsI	GAGTC	5 cut(s)	243, 325, 749, 1076, 1139
PscI	ACATGT	1 cut(s)	841
Psp124BI	GAGCTC	1 cut(s)	556
Psp6I	CCWGG	5 cut(s)	54, 243, 930, 1161, 1213
PspGI	CCWGG	5 cut(s)	54, 243, 930, 1161, 1213
PspN4I	GGNNCC	4 cut(s)	967, 1141, 1154, 1283
PspPI	GGNCC	4 cut(s)	83, 604, 629, 1139
PsuI	RGATCY	1 cut(s)	965
RseI	CAYNNNNRTG	2 cut(s)	309, 450
SacI	GAGCTC	1 cut(s)	556
SaqAI	TTAA	7 cut(s)	33, 359, 369, 641, 671, 1115, 1185
SatI	GCNGC	3 cut(s)	21, 106, 751
Sau3AI	GATC	5 cut(s)	277, 454, 463, 965, 1271
Sau96I	GGNCC	4 cut(s)	83, 604, 629, 1139
SchI	GAGTC	5 cut(s)	244, 326, 750, 1076, 1140
ScrFI	CCNGG	5 cut(s)	56, 245, 932, 1163, 1215
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	2 cut(s)	969, 1254
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	2 cut(s)	309, 450
Sse9I	AATT	6 cut(s)	167, 198, 534, 663, 993, 1051
SsiI	CCGC	3 cut(s)	106, 133, 422
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	4 cut(s)	488, 735, 834, 1232
SstI	GAGCTC	1 cut(s)	556
StyD4I	CCNGG	5 cut(s)	54, 243, 930, 1161, 1213
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	5 cut(s)	71, 397, 711, 910, 1072
TaqI	TCGA	5 cut(s)	66, 400, 1040, 1134, 1270
TasI	AATT	6 cut(s)	167, 198, 534, 663, 993, 1051
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	5 cut(s)	329, 986, 1042, 1091, 1169
Tru1I	TTAA	7 cut(s)	33, 359, 369, 641, 671, 1115, 1185
Tru9I	TTAA	7 cut(s)	33, 359, 369, 641, 671, 1115, 1185
TscAI	CASTG	2 cut(s)	388, 552
TseI	GCWGC	2 cut(s)	20, 750
TspDTI	ATGAA	4 cut(s)	179, 289, 609, 690
TspRI	CASTG	2 cut(s)	388, 552
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	1 cut(s)	1051
XceI	RCATGY	1 cut(s)	845
XmnI	GAANNNNTTC	1 cut(s)	1157
XspI	CTAG	4 cut(s)	488, 735, 834, 1232
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.