Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Reverse (-)

82292895 .. 82295949

Gene Structure 3055 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG479000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGGAGTCCATACAAGGTTTCACGAAATCGACCCAAGAGTTTTTCGACAACCTCATCCACCGCCGTGCAAATTGCCGGAATCCGATTGAAATACTGAAGCGATTGCAAAGAGAGACGTTTTCAGATTTGATGAGACTGAGGGACAGGCAAGACCAAGTTGAGAGAATGGTGTCCTTGTTTGGGCCTTCTAAAGGAAGCCCGTTTCAAGGAGGCAACACCCCTTTAAAGGTAGAAGTTGATTTCTTGGGGGGTTTGTTATGGAAGCATAATAATGATGATGATGATGATCATGGGGGTCATCAATACCCTGATGCTCTTAGTAGAGCTGGGATTAGAACTGGGTTTGATTCTAGGTTGAGTATTGAAATATCTCCCTCACCGCATGATGCTCTTTTGACTGAGTTTGTGGCCGGTCAGAAGTACAGGAATGATGGTTTTGATGTTTCAGAATGTCAGGTTTCTCTAGCTAAAGTGTCTTATATGGCAAATCTGAGCAATTGGTTGTCCGCCATTGCAATTCCAGTGGGAGCTCGGTGCAGGGACTTCGCGGTTGTTACGAGTCCTTCCCATCAGGGAAAGGGCCTAACTGATCGATCATCATTCGGACCACCTCTTCTGAATGAGTATAATGGCAGTGCAATTGGCCTAATGGTCAAAAATGCAAATGTGGTTGTTGCTTCATTGGCTCAGTCTGTTTCGGGACTGGGAGTGCCAGTAGGTTCTGGTAGAGTTGGGCACTGCTTGAGCACTTTTGGTCAAATTGTCTGCCAACTTCCCGGAAACACCAAACTCTCGCTTCTTGGTCTTCACCAAATGCCTAAATCGTCAGGTGAACATGTCAATCACGGAGCTCTTTCCGTCCCATCAGGCAGTTTGGAACACCATACGTCTCCTCCAACAACGGCTGAAGCATCTGCTCCACCCCTAAGAACAAACTCACAAGGAAACACGTCAGCAACTGGATCCATTGCTGTGATGTTCGAATCTGAAATTGACGAGACCACAAAGATTGGGAGTTGGGTTGAGATGAAGAAATTGAATCCCAGGCATTTAGAATGGGCCGTTTCTGTGTCCGATGACTCTAAAGATTCAGTTGGATGGGGAATAAGTTTAAATGGGATGGTTGGAGGTCCCAATAGCTGTGACCATTTTCAGATGGAATCCTACTTGAAATTTAACTTAAGTGAGAGATTCAGTGTAAAGCCTGGTATTGTACATATAATCGATGGCAATGCCAAAATGACTGCCCTTATGCTTAGGTCTAATTGGTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

425

Amino Acids

46.13

Weight (kDa)

6.43

Isoelectric Point (pI)

39.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	548
AciI	CCGC	4 cut(s)	61, 380, 507, 548
AclWI	GGATC	2 cut(s)	957, 970
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	1172
AcuI	CTGAAG	2 cut(s)	116, 927
AfaI	GTAC	2 cut(s)	422, 1215
AfiI	CCNNNNNNNGG	4 cut(s)	180, 191, 206, 226
AflII	CTTAAG	1 cut(s)	1180
AflIII	ACRYGT	2 cut(s)	835, 948
AgsI	TTSAA	5 cut(s)	89, 206, 365, 1039, 1171
AjiI	CACGTC	1 cut(s)	951
AjnI	CCWGG	2 cut(s)	1043, 1204
AleI	CACNNNNGTG	1 cut(s)	63
AluBI	AGCT	5 cut(s)	326, 467, 530, 851, 1140
AluI	AGCT	5 cut(s)	326, 467, 530, 851, 1140
Alw21I	GWGCWC	3 cut(s)	532, 749, 853
Alw26I	GTCTC	4 cut(s)	107, 127, 894, 992
AlwI	GGATC	2 cut(s)	957, 970
AlwNI	CAGNNNCTG	1 cut(s)	959
AoxI	GGCC	5 cut(s)	182, 408, 580, 643, 1059
ApoI	RAATTY	1 cut(s)	1172
AspS9I	GGNCC	5 cut(s)	182, 580, 605, 1059, 1130
AsuC2I	CCSGG	1 cut(s)	777
AsuHPI	GGTGA	3 cut(s)	369, 800, 842
AsuII	TTCGAA	1 cut(s)	981
AvaII	GGWCC	2 cut(s)	605, 1130
BaeGI	GKGCMC	1 cut(s)	738
BamHI	GGATCC	1 cut(s)	962
BanII	GRGCYC	2 cut(s)	532, 853
BbsI	GAAGAC	1 cut(s)	797
Bbv12I	GWGCWC	3 cut(s)	532, 749, 853
BccI	CCATC	7 cut(s)	425, 576, 871, 1092, 1114, 1150, 1220
BceAI	ACGGC	3 cut(s)	48, 918, 1046
BcgI	CGANNNNNNTGC	4 cut(s)	526, 560, 1214, 1248
BciT130I	CCWGG	2 cut(s)	1045, 1206
BclI	TGATCA	1 cut(s)	286
BcnI	CCSGG	1 cut(s)	777
BcoDI	GTCTC	4 cut(s)	107, 127, 894, 992
BfaI	CTAG	2 cut(s)	351, 464
BfrI	CTTAAG	1 cut(s)	1180
Bme1390I	CCNGG	3 cut(s)	777, 1045, 1206
Bme18I	GGWCC	2 cut(s)	605, 1130
BmgBI	CACGTC	1 cut(s)	951
BmgT120I	GGNCC	5 cut(s)	182, 580, 605, 1059, 1130
BmiI	GGNNCC	2 cut(s)	964, 1132
BmrFI	CCNGG	3 cut(s)	777, 1045, 1206
BmrI	ACTGGG	2 cut(s)	348, 713
BmsI	GCATC	3 cut(s)	301, 376, 920
BmuI	ACTGGG	2 cut(s)	348, 713
BpiI	GAAGAC	1 cut(s)	797
Bpu10I	CCTNAGC	1 cut(s)	1256
Bpu14I	TTCGAA	1 cut(s)	981
BpuEI	CTTGAG	1 cut(s)	763
BpuMI	CCSGG	1 cut(s)	777
Bsa29I	ATCGAT	2 cut(s)	592, 1224
BsaBI	GATNNNNATC	1 cut(s)	285
BsaI	GGTCTC	1 cut(s)	992
BsaJI	CCNNGG	1 cut(s)	1043
BsaXI	ACNNNNNCTCC	4 cut(s)	699, 729, 877, 907
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 191, 206, 226
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	5 cut(s)	343, 521, 708, 713, 964
Bse3DI	GCAATG	3 cut(s)	510, 966, 1237
Bse8I	GATNNNNATC	1 cut(s)	285
BseBI	CCWGG	2 cut(s)	1045, 1206
BseCI	ATCGAT	2 cut(s)	592, 1224
BseDI	CCNNGG	1 cut(s)	1043
BseGI	GGATG	3 cut(s)	54, 1103, 1125
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	4 cut(s)	180, 191, 206, 226
BseMI	GCAATG	3 cut(s)	510, 966, 1237
BseMII	CTCAG	4 cut(s)	128, 390, 482, 701
BseNI	ACTGG	5 cut(s)	343, 521, 708, 713, 964
BseRI	GAGGAG	1 cut(s)	882
BseSI	GKGCMC	1 cut(s)	738
BseYI	CCCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	548
BshFI	GGCC	5 cut(s)	184, 410, 582, 645, 1061
BshVI	ATCGAT	2 cut(s)	592, 1224
BsiHKAI	GWGCWC	3 cut(s)	532, 749, 853
BsiSI	CCGG	3 cut(s)	76, 411, 777
BslFI	GGGAC	5 cut(s)	155, 554, 714, 845, 1116
BslI	CCNNNNNNNGG	4 cut(s)	180, 191, 206, 226
BsmAI	GTCTC	4 cut(s)	107, 127, 894, 992
BsmBI	CGTCTC	2 cut(s)	107, 894
BsmFI	GGGAC	5 cut(s)	155, 554, 714, 845, 1116
BsnI	GGCC	5 cut(s)	184, 410, 582, 645, 1061
Bso31I	GGTCTC	1 cut(s)	992
Bsp119I	TTCGAA	1 cut(s)	981
Bsp1286I	GDGCHC	4 cut(s)	532, 738, 749, 853
Bsp1407I	TGTACA	1 cut(s)	1213
Bsp143I	GATC	4 cut(s)	286, 589, 593, 962
BspACI	CCGC	4 cut(s)	61, 380, 507, 548
BspANI	GGCC	5 cut(s)	184, 410, 582, 645, 1061
BspCNI	CTCAG	4 cut(s)	129, 391, 483, 700
BspDI	ATCGAT	2 cut(s)	592, 1224
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	2 cut(s)	964, 1132
BspPI	GGATC	2 cut(s)	957, 970
BspT104I	TTCGAA	1 cut(s)	981
BspTI	CTTAAG	1 cut(s)	1180
BspTNI	GGTCTC	1 cut(s)	992
BsrDI	GCAATG	3 cut(s)	510, 966, 1237
BsrFI	RCCGGY	1 cut(s)	410
BsrGI	TGTACA	1 cut(s)	1213
BsrI	ACTGG	5 cut(s)	343, 521, 708, 713, 964
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	1043
BssMI	GATC	4 cut(s)	286, 589, 593, 962
Bst2UI	CCWGG	2 cut(s)	1045, 1206
Bst6I	CTCTTC	1 cut(s)	618
BstAFI	CTTAAG	1 cut(s)	1180
BstAUI	TGTACA	1 cut(s)	1213
BstBI	TTCGAA	1 cut(s)	981
BstDEI	CTNAG	7 cut(s)	137, 317, 399, 491, 687, 926, 1256
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	54, 1103, 1125
BstFNI	CGCG	1 cut(s)	548
BstKTI	GATC	4 cut(s)	289, 592, 596, 965
BstMAI	GTCTC	4 cut(s)	107, 127, 894, 992
BstMBI	GATC	4 cut(s)	286, 589, 593, 962
BstMWI	GCNNNNNNNGC	1 cut(s)	683
BstNI	CCWGG	2 cut(s)	1045, 1206
BstNSI	RCATGY	1 cut(s)	839
BstSCI	CCNGG	3 cut(s)	775, 1043, 1204
BstSLI	GKGCMC	1 cut(s)	738
BstUI	CGCG	1 cut(s)	548
BstV2I	GAAGAC	1 cut(s)	797
BstX2I	RGATCY	1 cut(s)	962
BstYI	RGATCY	1 cut(s)	962
Bsu15I	ATCGAT	2 cut(s)	592, 1224
BsuRI	GGCC	5 cut(s)	184, 410, 582, 645, 1061
BsuTUI	ATCGAT	2 cut(s)	592, 1224
BtrI	CACGTC	1 cut(s)	951
BtsCI	GGATG	3 cut(s)	54, 1103, 1125
BtsI	GCAGTG	2 cut(s)	640, 736
BtsIMutI	CAGTG	4 cut(s)	528, 640, 736, 1201
CaiI	CAGNNNCTG	1 cut(s)	959
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	5 cut(s)	182, 580, 605, 1059, 1130
ClaI	ATCGAT	2 cut(s)	592, 1224
Csp6I	GTAC	2 cut(s)	421, 1214
CspCI	CAANNNNNGTGG	4 cut(s)	504, 539, 991, 1026
CviAII	CATG	3 cut(s)	290, 383, 836
CviQI	GTAC	2 cut(s)	421, 1214
DdeI	CTNAG	7 cut(s)	137, 317, 399, 491, 687, 926, 1256
DpnI	GATC	4 cut(s)	288, 591, 595, 964
DpnII	GATC	4 cut(s)	286, 589, 593, 962
DraI	TTTAAA	2 cut(s)	225, 1113
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	618
EciI	GGCGGA	1 cut(s)	496
Ecl136II	GAGCTC	2 cut(s)	530, 851
Eco24I	GRGCYC	2 cut(s)	532, 853
Eco31I	GGTCTC	1 cut(s)	992
Eco47I	GGWCC	2 cut(s)	605, 1130
Eco53kI	GAGCTC	2 cut(s)	530, 851
Eco57I	CTGAAG	2 cut(s)	116, 927
EcoICRI	GAGCTC	2 cut(s)	530, 851
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	2 cut(s)	580, 1130
EcoRII	CCWGG	2 cut(s)	1043, 1204
EcoT38I	GRGCYC	2 cut(s)	532, 853
Esp3I	CGTCTC	2 cut(s)	107, 894
FaeI	CATG	3 cut(s)	293, 386, 839
FaqI	GGGAC	5 cut(s)	155, 554, 714, 845, 1116
FatI	CATG	3 cut(s)	289, 382, 835
FbaI	TGATCA	1 cut(s)	286
FokI	GGATG	3 cut(s)	41, 1110, 1132
FriOI	GRGCYC	2 cut(s)	532, 853
FspBI	CTAG	2 cut(s)	351, 464
GsaI	CCCAGC	1 cut(s)	330
HaeIII	GGCC	5 cut(s)	184, 410, 582, 645, 1061
HapII	CCGG	3 cut(s)	76, 411, 777
Hin1II	CATG	3 cut(s)	293, 386, 839
HpaII	CCGG	3 cut(s)	76, 411, 777
HphI	GGTGA	3 cut(s)	369, 800, 842
Hpy166II	GTNNAC	1 cut(s)	833
Hpy188III	TCNNGA	2 cut(s)	22, 699
Hpy8I	GTNNAC	1 cut(s)	833
HpyAV	CCTTC	2 cut(s)	195, 573
HpyCH4IV	ACGT	3 cut(s)	116, 887, 950
HpyCH4V	TGCA	6 cut(s)	68, 106, 515, 537, 638, 662
HpyF10VI	GCNNNNNNNGC	1 cut(s)	683
HpyF3I	CTNAG	7 cut(s)	137, 317, 399, 491, 687, 926, 1256
HpySE526I	ACGT	3 cut(s)	116, 887, 950
Hsp92II	CATG	3 cut(s)	293, 386, 839
Ksp22I	TGATCA	1 cut(s)	286
Kzo9I	GATC	4 cut(s)	286, 589, 593, 962
LmnI	GCTCC	3 cut(s)	527, 848, 922
LweI	GCATC	3 cut(s)	301, 376, 920
MaeI	CTAG	2 cut(s)	351, 464
MaeII	ACGT	3 cut(s)	116, 887, 950
MaeIII	GTNAC	2 cut(s)	553, 1142
MalI	GATC	4 cut(s)	288, 591, 595, 964
MboI	GATC	4 cut(s)	286, 589, 593, 962
MboII	GAAGA	3 cut(s)	605, 797, 1042
MfeI	CAATTG	2 cut(s)	496, 639
MflI	RGATCY	1 cut(s)	962
MhlI	GDGCHC	4 cut(s)	532, 738, 749, 853
MluCI	AATT	9 cut(s)	70, 496, 516, 639, 759, 990, 1034, 1172, 1264
MlyI	GAGTC	3 cut(s)	14, 568, 1073
MmeI	TCCRAC	3 cut(s)	920, 1075, 1105
MnlI	CCTC	7 cut(s)	62, 132, 203, 385, 621, 903, 1121
MseI	TTAA	4 cut(s)	224, 1112, 1176, 1181
MslI	CAYNNNNRTG	3 cut(s)	63, 270, 971
MspCI	CTTAAG	1 cut(s)	1180
MspI	CCGG	3 cut(s)	76, 411, 777
MspR9I	CCNGG	3 cut(s)	777, 1045, 1206
MunI	CAATTG	2 cut(s)	496, 639
MvaI	CCWGG	2 cut(s)	1045, 1206
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	1 cut(s)	683
NciI	CCSGG	1 cut(s)	777
NdeII	GATC	4 cut(s)	286, 589, 593, 962
NlaIII	CATG	3 cut(s)	293, 386, 839
NlaIV	GGNNCC	2 cut(s)	964, 1132
NmuCI	GTSAC	1 cut(s)	1142
NspI	RCATGY	1 cut(s)	839
NspV	TTCGAA	1 cut(s)	981
OliI	CACNNNNGTG	1 cut(s)	63
PciI	ACATGT	1 cut(s)	835
PfeI	GAWTC	7 cut(s)	79, 347, 983, 1039, 1088, 1160, 1191
PfoI	TCCNGGA	1 cut(s)	775
PleI	GAGTC	3 cut(s)	13, 567, 1073
PpsI	GAGTC	3 cut(s)	13, 567, 1073
PpuMI	RGGWCCY	1 cut(s)	1130
PscI	ACATGT	1 cut(s)	835
Psp124BI	GAGCTC	2 cut(s)	532, 853
Psp5II	RGGWCCY	1 cut(s)	1130
Psp6I	CCWGG	2 cut(s)	1043, 1204
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	2 cut(s)	1043, 1204
PspN4I	GGNNCC	2 cut(s)	964, 1132
PspPI	GGNCC	5 cut(s)	182, 580, 605, 1059, 1130
PspPPI	RGGWCCY	1 cut(s)	1130
PstNI	CAGNNNCTG	1 cut(s)	959
PsuI	RGATCY	1 cut(s)	962
RsaI	GTAC	2 cut(s)	422, 1215
RsaNI	GTAC	2 cut(s)	421, 1214
RseI	CAYNNNNRTG	3 cut(s)	63, 270, 971
SacI	GAGCTC	2 cut(s)	532, 853
SaqAI	TTAA	4 cut(s)	224, 1112, 1176, 1181
Sau3AI	GATC	4 cut(s)	286, 589, 593, 962
Sau96I	GGNCC	5 cut(s)	182, 580, 605, 1059, 1130
SchI	GAGTC	3 cut(s)	14, 568, 1073
ScrFI	CCNGG	3 cut(s)	777, 1045, 1206
SduI	GDGCHC	4 cut(s)	532, 738, 749, 853
SfaNI	GCATC	3 cut(s)	301, 376, 920
SfuI	TTCGAA	1 cut(s)	981
SinI	GGWCC	2 cut(s)	605, 1130
SmiMI	CAYNNNNRTG	3 cut(s)	63, 270, 971
SmlI	CTYRAG	2 cut(s)	742, 1180
SmoI	CTYRAG	2 cut(s)	742, 1180
Sse9I	AATT	9 cut(s)	70, 496, 516, 639, 759, 990, 1034, 1172, 1264
SsiI	CCGC	4 cut(s)	61, 380, 507, 548
SspMI	CTAG	2 cut(s)	351, 464
SstI	GAGCTC	2 cut(s)	532, 853
StyD4I	CCNGG	3 cut(s)	775, 1043, 1204
TaiI	ACGT	3 cut(s)	119, 890, 953
TaqI	TCGA	5 cut(s)	29, 45, 592, 981, 1224
TasI	AATT	9 cut(s)	70, 496, 516, 639, 759, 990, 1034, 1172, 1264
TatI	WGTACW	2 cut(s)	420, 1213
TfiI	GAWTC	7 cut(s)	79, 347, 983, 1039, 1088, 1160, 1191
Tru1I	TTAA	4 cut(s)	224, 1112, 1176, 1181
Tru9I	TTAA	4 cut(s)	224, 1112, 1176, 1181
TscAI	CASTG	4 cut(s)	528, 640, 743, 1201
TseFI	GTSAC	1 cut(s)	1142
Tsp45I	GTSAC	1 cut(s)	1142
TspDTI	ATGAA	2 cut(s)	669, 1043
TspGWI	ACGGA	2 cut(s)	847, 861
TspRI	CASTG	4 cut(s)	528, 640, 743, 1201
Vha464I	CTTAAG	1 cut(s)	1180
VpaK11BI	GGWCC	2 cut(s)	605, 1130
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	1172
XceI	RCATGY	1 cut(s)	839
XspI	CTAG	2 cut(s)	351, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.