Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Reverse (-)

79875220 .. 79878745

Gene Structure 3526 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG511800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCAAATGTGAGCAATTGGTTGTCTGCCATTGCAATTCCAGTGGGAGCTCGGTGCAGGGACGTCGCGGTTGTTACGAGTCCTTCCCATCAGGGAAAGGGCCTAACTGATCGATCATCATTCGGACCACCTCTTCTAAATGAGTATAATGGCAGTGCAATTGGCATAATGGTGAAAAATGCAAATGTAATTGTTGCTTCATTGGCTCAGTCTGTTTCAGGACTGGGAGTGCCAGTAGGTTCTGGTAGAGTTGGGCACTGCTTGAGCACTTTTGGTCAAATTGTCTGCCAACTTCCGGGAAACACCAAACTCTCGCTTCTTGGTCTTCACCAAATGCCTAAATCATCAAGTGAACATGTCAATCACAGAGCTCTTTCCGTCCCATCAGGCAGTTTGGAACACCATACATCTCCTCCAACAACGGCTGAAGCATCTGCTCCACCCCTAAGAACAAACTCACAAGGAAACACGTCAGCAACTGGATCCATTGCTGTGATGATCGAATCTGAAATTGACGAGACCACAAAGATTGGGAGTTGGGTTGAGATGAAGAAATTGAATCCCAGGCATTTAGAATGGGCCGTGTCTGTGTCCGATGACTCTAAAGATTCAGTTGGATGGGGAATAAGTTTAAATGGGATGGTCGGAGGTCTCAATAGCTGTGACCATTTTCAGATGGAATCCTACTTGAAATTTAACTTAAGTGAGAGATTCAGTGTAAAGCCTGGTATTGTGCATATAATCGATGGCAATGCCAAAATGACTGCCCTTATGCTTAGGTCTAATTGGTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

265

Amino Acids

28.04

Weight (kDa)

7.78

Isoelectric Point (pI)

33.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	66
AccII	CGCG	1 cut(s)	68
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	2 cut(s)	477, 490
AcsI	RAATTY	1 cut(s)	692
AcuI	CTGAAG	1 cut(s)	447
AcyI	GRCGYC	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	295
AflII	CTTAAG	1 cut(s)	700
AflIII	ACRYGT	2 cut(s)	355, 468
AgsI	TTSAA	2 cut(s)	559, 691
AjiI	CACGTC	1 cut(s)	471
AjnI	CCWGG	2 cut(s)	563, 724
AluBI	AGCT	3 cut(s)	50, 371, 660
AluI	AGCT	3 cut(s)	50, 371, 660
Alw21I	GWGCWC	3 cut(s)	52, 269, 373
Alw26I	GTCTC	2 cut(s)	512, 656
AlwI	GGATC	2 cut(s)	477, 490
AlwNI	CAGNNNCTG	1 cut(s)	479
AoxI	GGCC	2 cut(s)	100, 579
ApoI	RAATTY	1 cut(s)	692
AspS9I	GGNCC	3 cut(s)	100, 125, 579
AsuC2I	CCSGG	1 cut(s)	297
AsuHPI	GGTGA	2 cut(s)	184, 320
AvaII	GGWCC	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	258
BamHI	GGATCC	1 cut(s)	482
BanII	GRGCYC	2 cut(s)	52, 373
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	3 cut(s)	52, 269, 373
BccI	CCATC	6 cut(s)	96, 391, 612, 634, 670, 740
BceAI	ACGGC	2 cut(s)	438, 566
BcgI	CGANNNNNNTGC	4 cut(s)	46, 80, 734, 768
BciT130I	CCWGG	2 cut(s)	565, 726
BcnI	CCSGG	1 cut(s)	297
BcoDI	GTCTC	2 cut(s)	512, 656
BfrI	CTTAAG	1 cut(s)	700
Bme1390I	CCNGG	3 cut(s)	297, 565, 726
Bme18I	GGWCC	1 cut(s)	125
BmgBI	CACGTC	1 cut(s)	471
BmgT120I	GGNCC	3 cut(s)	100, 125, 579
BmiI	GGNNCC	1 cut(s)	484
BmrFI	CCNGG	3 cut(s)	297, 565, 726
BmrI	ACTGGG	1 cut(s)	233
BmsI	GCATC	1 cut(s)	440
BmuI	ACTGGG	1 cut(s)	233
BpiI	GAAGAC	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	776
BpuEI	CTTGAG	1 cut(s)	283
BpuMI	CCSGG	1 cut(s)	297
Bsa29I	ATCGAT	2 cut(s)	112, 744
BsaHI	GRCGYC	1 cut(s)	63
BsaI	GGTCTC	2 cut(s)	512, 656
BsaJI	CCNNGG	1 cut(s)	563
BsaXI	ACNNNNNCTCC	4 cut(s)	219, 249, 397, 427
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	4 cut(s)	41, 228, 233, 484
Bse3DI	GCAATG	3 cut(s)	30, 486, 757
BseBI	CCWGG	2 cut(s)	565, 726
BseCI	ATCGAT	2 cut(s)	112, 744
BseDI	CCNNGG	1 cut(s)	563
BseGI	GGATG	2 cut(s)	623, 645
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	3 cut(s)	30, 486, 757
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	4 cut(s)	41, 228, 233, 484
BseRI	GAGGAG	1 cut(s)	402
BseSI	GKGCMC	1 cut(s)	258
BsgI	GTGCAG	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	68
BshFI	GGCC	2 cut(s)	102, 581
BshVI	ATCGAT	2 cut(s)	112, 744
BsiHKAI	GWGCWC	3 cut(s)	52, 269, 373
BsiSI	CCGG	1 cut(s)	296
BslFI	GGGAC	2 cut(s)	74, 365
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	2 cut(s)	512, 656
BsmFI	GGGAC	2 cut(s)	74, 365
BsnI	GGCC	2 cut(s)	102, 581
Bso31I	GGTCTC	2 cut(s)	512, 656
Bsp1286I	GDGCHC	4 cut(s)	52, 258, 269, 373
Bsp143I	GATC	4 cut(s)	109, 113, 482, 498
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	2 cut(s)	102, 581
BspCNI	CTCAG	1 cut(s)	220
BspDI	ATCGAT	2 cut(s)	112, 744
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	484
BspPI	GGATC	2 cut(s)	477, 490
BspTI	CTTAAG	1 cut(s)	700
BspTNI	GGTCTC	2 cut(s)	512, 656
BsrDI	GCAATG	3 cut(s)	30, 486, 757
BsrI	ACTGG	4 cut(s)	41, 228, 233, 484
BssECI	CCNNGG	1 cut(s)	563
BssMI	GATC	4 cut(s)	109, 113, 482, 498
BssNI	GRCGYC	1 cut(s)	63
Bst2UI	CCWGG	2 cut(s)	565, 726
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	63
BstAFI	CTTAAG	1 cut(s)	700
BstDEI	CTNAG	3 cut(s)	207, 446, 776
BstF5I	GGATG	2 cut(s)	623, 645
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	4 cut(s)	112, 116, 485, 501
BstMAI	GTCTC	2 cut(s)	512, 656
BstMBI	GATC	4 cut(s)	109, 113, 482, 498
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstNI	CCWGG	2 cut(s)	565, 726
BstNSI	RCATGY	1 cut(s)	359
BstSCI	CCNGG	3 cut(s)	295, 563, 724
BstSLI	GKGCMC	1 cut(s)	258
BstUI	CGCG	1 cut(s)	68
BstV2I	GAAGAC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	482
Bsu15I	ATCGAT	2 cut(s)	112, 744
BsuRI	GGCC	2 cut(s)	102, 581
BsuTUI	ATCGAT	2 cut(s)	112, 744
BtrI	CACGTC	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	623, 645
BtsI	GCAGTG	2 cut(s)	160, 256
BtsIMutI	CAGTG	4 cut(s)	48, 160, 256, 721
CaiI	CAGNNNCTG	1 cut(s)	479
Cfr13I	GGNCC	3 cut(s)	100, 125, 579
ClaI	ATCGAT	2 cut(s)	112, 744
CspCI	CAANNNNNGTGG	4 cut(s)	24, 59, 511, 546
CviAII	CATG	1 cut(s)	356
CviJI	RGCY	8 cut(s)	50, 102, 206, 371, 425, 581, 660, 724
CviKI_1	RGCY	8 cut(s)	50, 102, 206, 371, 425, 581, 660, 724
DdeI	CTNAG	3 cut(s)	207, 446, 776
DpnI	GATC	4 cut(s)	111, 115, 484, 500
DpnII	GATC	4 cut(s)	109, 113, 482, 498
DraI	TTTAAA	1 cut(s)	633
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	2 cut(s)	50, 371
Eco24I	GRGCYC	2 cut(s)	52, 373
Eco31I	GGTCTC	2 cut(s)	512, 656
Eco47I	GGWCC	1 cut(s)	125
Eco53kI	GAGCTC	2 cut(s)	50, 371
Eco57I	CTGAAG	1 cut(s)	447
EcoICRI	GAGCTC	2 cut(s)	50, 371
EcoO109I	RGGNCCY	1 cut(s)	100
EcoRII	CCWGG	2 cut(s)	563, 724
EcoT38I	GRGCYC	2 cut(s)	52, 373
FaeI	CATG	1 cut(s)	359
FaiI	YATR	7 cut(s)	147, 167, 357, 405, 738, 740, 773
FaqI	GGGAC	2 cut(s)	74, 365
FatI	CATG	1 cut(s)	355
FokI	GGATG	2 cut(s)	630, 652
FriOI	GRGCYC	2 cut(s)	52, 373
HaeIII	GGCC	2 cut(s)	102, 581
HapII	CCGG	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	1 cut(s)	359
HinfI	GANTC	7 cut(s)	79, 503, 559, 599, 608, 680, 711
HpaII	CCGG	1 cut(s)	296
HphI	GGTGA	2 cut(s)	184, 320
Hpy166II	GTNNAC	1 cut(s)	353
Hpy188I	TCNGA	6 cut(s)	125, 508, 595, 647, 675, 797
Hpy188III	TCNNGA	1 cut(s)	219
Hpy8I	GTNNAC	1 cut(s)	353
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	93
HpyCH4IV	ACGT	2 cut(s)	63, 470
HpyCH4V	TGCA	5 cut(s)	35, 57, 158, 182, 736
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	3 cut(s)	207, 446, 776
HpySE526I	ACGT	2 cut(s)	63, 470
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	359
Kzo9I	GATC	4 cut(s)	109, 113, 482, 498
LmnI	GCTCC	2 cut(s)	47, 442
LweI	GCATC	1 cut(s)	440
MaeII	ACGT	2 cut(s)	63, 470
MaeIII	GTNAC	2 cut(s)	73, 662
MalI	GATC	4 cut(s)	111, 115, 484, 500
MboI	GATC	4 cut(s)	109, 113, 482, 498
MboII	GAAGA	3 cut(s)	125, 317, 562
MfeI	CAATTG	2 cut(s)	16, 159
MflI	RGATCY	1 cut(s)	482
MhlI	GDGCHC	4 cut(s)	52, 258, 269, 373
MluCI	AATT	9 cut(s)	16, 36, 159, 189, 279, 510, 554, 692, 784
MlyI	GAGTC	2 cut(s)	88, 593
MmeI	TCCRAC	3 cut(s)	440, 595, 625
MnlI	CCTC	3 cut(s)	141, 423, 641
MseI	TTAA	3 cut(s)	632, 696, 701
MslI	CAYNNNNRTG	2 cut(s)	170, 491
MspCI	CTTAAG	1 cut(s)	700
MspI	CCGG	1 cut(s)	296
MspR9I	CCNGG	3 cut(s)	297, 565, 726
MunI	CAATTG	2 cut(s)	16, 159
MvaI	CCWGG	2 cut(s)	565, 726
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	1 cut(s)	203
NciI	CCSGG	1 cut(s)	297
NdeII	GATC	4 cut(s)	109, 113, 482, 498
NlaIII	CATG	1 cut(s)	359
NlaIV	GGNNCC	1 cut(s)	484
NmuCI	GTSAC	1 cut(s)	662
NspI	RCATGY	1 cut(s)	359
PciI	ACATGT	1 cut(s)	355
PfeI	GAWTC	5 cut(s)	503, 559, 608, 680, 711
PfoI	TCCNGGA	1 cut(s)	295
PleI	GAGTC	2 cut(s)	87, 593
PpsI	GAGTC	2 cut(s)	87, 593
PscI	ACATGT	1 cut(s)	355
Psp124BI	GAGCTC	2 cut(s)	52, 373
Psp6I	CCWGG	2 cut(s)	563, 724
PspGI	CCWGG	2 cut(s)	563, 724
PspN4I	GGNNCC	1 cut(s)	484
PspPI	GGNCC	3 cut(s)	100, 125, 579
PstNI	CAGNNNCTG	1 cut(s)	479
PsuI	RGATCY	1 cut(s)	482
RseI	CAYNNNNRTG	2 cut(s)	170, 491
SacI	GAGCTC	2 cut(s)	52, 373
SaqAI	TTAA	3 cut(s)	632, 696, 701
Sau3AI	GATC	4 cut(s)	109, 113, 482, 498
Sau96I	GGNCC	3 cut(s)	100, 125, 579
SchI	GAGTC	2 cut(s)	88, 593
ScrFI	CCNGG	3 cut(s)	297, 565, 726
SduI	GDGCHC	4 cut(s)	52, 258, 269, 373
SetI	ASST	9 cut(s)	52, 66, 133, 241, 373, 473, 652, 662, 782
SfaNI	GCATC	1 cut(s)	440
SinI	GGWCC	1 cut(s)	125
SmiMI	CAYNNNNRTG	2 cut(s)	170, 491
SmlI	CTYRAG	2 cut(s)	262, 700
SmoI	CTYRAG	2 cut(s)	262, 700
Sse9I	AATT	9 cut(s)	16, 36, 159, 189, 279, 510, 554, 692, 784
SsiI	CCGC	1 cut(s)	68
SstI	GAGCTC	2 cut(s)	52, 373
StyD4I	CCNGG	3 cut(s)	295, 563, 724
TaiI	ACGT	2 cut(s)	66, 473
TaqI	TCGA	3 cut(s)	112, 501, 744
TasI	AATT	9 cut(s)	16, 36, 159, 189, 279, 510, 554, 692, 784
TfiI	GAWTC	5 cut(s)	503, 559, 608, 680, 711
Tru1I	TTAA	3 cut(s)	632, 696, 701
Tru9I	TTAA	3 cut(s)	632, 696, 701
TscAI	CASTG	4 cut(s)	48, 160, 263, 721
TseFI	GTSAC	1 cut(s)	662
Tsp45I	GTSAC	1 cut(s)	662
TspDTI	ATGAA	2 cut(s)	189, 563
TspGWI	ACGGA	1 cut(s)	367
TspRI	CASTG	4 cut(s)	48, 160, 263, 721
Vha464I	CTTAAG	1 cut(s)	700
VpaK11BI	GGWCC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	692
XceI	RCATGY	1 cut(s)	359
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.