Rorug06G0321200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004161
Physical Location & Seq
Forward (+)
47281019 .. 47282594
1576 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0321200.1

Sequence Viewer

Length: 726 bp
ATGTGGAGCCAACCCTACCGGAAAGATGACGTGGAGTCCGGATCCCGGCCGCTCTACCCCATGATGCTCGAGAGCCCCGAGCTCCGCTGGTCCTTCATCCGCAAAATCTACTCCATCATCGCCGTCCAACTGCTCGCCACCATCGCCGTCGCCGCCACCGTCGTCTCCTACCACCCGATTGCCAACTTCTTCGTCAGCACCGGCGCCGGCTTGGCCCTCTACATAGTCCTCATCATCACTCCCTTCATCGTGTTGTGCCCGCTGTACTATTACCACCAGAGGCATCCTGTGAATTACCTCCTGCTTGGGATTTTCACCATCTCTCTTGCCTTTGTGGTGGGATTGACTTGCGCTTTTACTAGCGGGAAGGTTATTTTGGAGTCTGTGATACTCACCGTTGTGGTTGTAATTGCTCTCACCCTGTACACATTTTGGGCTGCAAGGAGAGGCCAAGATTTCAACTTTCTTGGTCCCTTCTTGGCCGGAGCATTGCTCGTTCTCATTGTGTTTTCTCTGATTCAGGTTTTCTTCCCCCTGGGTAAGCTCTCAGTGATGATATACGGGTGCTTGGCATCGATCATCTTTTGTGGATACATTGTGTATGACACGGACAATCTCATCAAGCGCTACTCTTACGACGAGTACATTTGGGCTGCGGTCTCGTTGTATTTGGATATCATCAACCTGTTCCTTGCATTGCTGACTATTTTCAGAAGTGCTGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

27.18

Weight (kDa)

7.63

Isoelectric Point (pI)

27.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bax1-I PF01027 31 - 237 8e-49 Inhibitor of apoptosis-promoting Bax1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 52
AccIII TCCGGA 1 cut(s) 38
AciI CCGC 7 cut(s) 50, 85, 100, 153, 260, 363, 656
AclWI GGATC 2 cut(s) 36, 49
AcoI YGGCCR 2 cut(s) 47, 480
AcyI GRCGYC 1 cut(s) 204
AfaI GTAC 3 cut(s) 266, 425, 644
AfeI AGCGCT 1 cut(s) 626
AfiI CCNNNNNNNGG 1 cut(s) 45
AgsI TTSAA 1 cut(s) 460
AhdI GACNNNNNGTC 1 cut(s) 34
AjiI CACGTC 1 cut(s) 31
AjnI CCWGG 1 cut(s) 534
AjuI GAANNNNNNNTTGG 2 cut(s) 359, 391
AleI CACNNNNGTG 1 cut(s) 398
AluBI AGCT 2 cut(s) 82, 544
AluI AGCT 2 cut(s) 82, 544
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 2 cut(s) 169, 664
AlwI GGATC 2 cut(s) 36, 49
Ama87I CYCGRG 2 cut(s) 68, 77
Aor13HI TCCGGA 1 cut(s) 38
Aor51HI AGCGCT 1 cut(s) 626
AoxI GGCC 4 cut(s) 47, 213, 448, 480
ApeKI GCWGC 2 cut(s) 437, 653
AspLEI GCGC 3 cut(s) 206, 353, 627
AspS9I GGNCC 3 cut(s) 90, 214, 470
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 3 cut(s) 307, 385, 409
AvaI CYCGRG 2 cut(s) 68, 77
AvaII GGWCC 2 cut(s) 90, 470
BaeGI GKGCMC 1 cut(s) 260
BamHI GGATCC 1 cut(s) 41
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 2 cut(s) 77, 84
Bbv12I GWGCWC 1 cut(s) 84
BbvI GCAGC 2 cut(s) 424, 640
BccI CCATC 3 cut(s) 122, 149, 326
BceAI ACGGC 2 cut(s) 107, 131
BciT130I CCWGG 1 cut(s) 536
BciVI GTATCC 1 cut(s) 584
BcnI CCSGG 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 169, 664
BfaI CTAG 1 cut(s) 360
BfoI RGCGCY 2 cut(s) 207, 628
BfuI GTATCC 1 cut(s) 584
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 4 cut(s) 50, 153, 438, 654
BlsI GCNGC 4 cut(s) 51, 154, 439, 655
Bme1390I CCNGG 2 cut(s) 46, 536
Bme18I GGWCC 2 cut(s) 90, 470
BmeRI GACNNNNNGTC 1 cut(s) 34
BmeT110I CYCGRG 2 cut(s) 68, 77
BmgBI CACGTC 1 cut(s) 31
BmgT120I GGNCC 3 cut(s) 90, 214, 470
BmiI GGNNCC 4 cut(s) 8, 43, 205, 472
BmrFI CCNGG 2 cut(s) 46, 536
BmsI GCATC 3 cut(s) 54, 292, 581
BplI GAGNNNNNCTC 2 cut(s) 477, 509
BpuMI CCSGG 1 cut(s) 46
Bsa29I ATCGAT 1 cut(s) 575
BsaHI GRCGYC 1 cut(s) 204
BsaI GGTCTC 1 cut(s) 664
BsaJI CCNNGG 2 cut(s) 534, 535
BsaWI WCCGGW 2 cut(s) 18, 38
Bsc4I CCNNNNNNNGG 1 cut(s) 45
Bse118I RCCGGY 2 cut(s) 200, 206
Bse3DI GCAATG 2 cut(s) 488, 695
BseAI TCCGGA 1 cut(s) 38
BseBI CCWGG 1 cut(s) 536
BseCI ATCGAT 1 cut(s) 575
BseDI CCNNGG 2 cut(s) 534, 535
BseGI GGATG 2 cut(s) 96, 283
BseLI CCNNNNNNNGG 1 cut(s) 45
BseMI GCAATG 2 cut(s) 488, 695
BseMII CTCAG 1 cut(s) 561
BseSI GKGCMC 1 cut(s) 260
BseX3I CGGCCG 1 cut(s) 47
BseXI GCAGC 2 cut(s) 424, 640
Bsh1285I CGRYCG 1 cut(s) 50
BshFI GGCC 4 cut(s) 49, 215, 450, 482
BshNI GGYRCC 1 cut(s) 203
BshVI ATCGAT 1 cut(s) 575
BsiEI CGRYCG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 84
BsiHKCI CYCGRG 2 cut(s) 68, 77
BsiSI CCGG 6 cut(s) 19, 39, 46, 201, 207, 483
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 45
BsmAI GTCTC 2 cut(s) 169, 664
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 456
BsnI GGCC 4 cut(s) 49, 215, 450, 482
Bso31I GGTCTC 1 cut(s) 664
BsoBI CYCGRG 2 cut(s) 68, 77
Bsp1286I GDGCHC 3 cut(s) 77, 84, 260
Bsp13I TCCGGA 1 cut(s) 38
Bsp1407I TGTACA 1 cut(s) 423
Bsp143I GATC 2 cut(s) 41, 576
BspACI CCGC 7 cut(s) 50, 85, 100, 153, 260, 363, 656
BspANI GGCC 4 cut(s) 49, 215, 450, 482
BspCNI CTCAG 1 cut(s) 560
BspDI ATCGAT 1 cut(s) 575
BspEI TCCGGA 1 cut(s) 38
BspLI GGNNCC 4 cut(s) 8, 43, 205, 472
BspPI GGATC 2 cut(s) 36, 49
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 664
BsrBI CCGCTC 1 cut(s) 52
BsrDI GCAATG 2 cut(s) 488, 695
BsrFI RCCGGY 2 cut(s) 200, 206
BsrGI TGTACA 1 cut(s) 423
BssAI RCCGGY 2 cut(s) 200, 206
BssECI CCNNGG 2 cut(s) 534, 535
BssMI GATC 2 cut(s) 41, 576
BssNI GRCGYC 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 536
Bst4CI ACNGT 2 cut(s) 160, 397
BstACI GRCGYC 1 cut(s) 204
BstAUI TGTACA 1 cut(s) 423
BstC8I GCNNGC 3 cut(s) 135, 208, 260
BstDEI CTNAG 1 cut(s) 547
BstF5I GGATG 2 cut(s) 96, 283
BstH2I RGCGCY 2 cut(s) 207, 628
BstHHI GCGC 3 cut(s) 206, 353, 627
BstKTI GATC 2 cut(s) 44, 579
BstMAI GTCTC 2 cut(s) 169, 664
BstMBI GATC 2 cut(s) 41, 576
BstMCI CGRYCG 1 cut(s) 50
BstMWI GCNNNNNNNGC 3 cut(s) 143, 152, 212
BstNI CCWGG 1 cut(s) 536
BstSCI CCNGG 2 cut(s) 44, 534
BstSLI GKGCMC 1 cut(s) 260
BstV1I GCAGC 2 cut(s) 424, 640
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BstZI CGGCCG 1 cut(s) 47
Bsu15I ATCGAT 1 cut(s) 575
BsuI GTATCC 1 cut(s) 584
BsuRI GGCC 4 cut(s) 49, 215, 450, 482
BsuTUI ATCGAT 1 cut(s) 575
BtgZI GCGATG 2 cut(s) 103, 127
BtrI CACGTC 1 cut(s) 31
BtsCI GGATG 2 cut(s) 96, 283
BtsIMutI CAGTG 1 cut(s) 555
Cac8I GCNNGC 3 cut(s) 135, 208, 260
CfoI GCGC 3 cut(s) 206, 353, 627
Cfr10I RCCGGY 2 cut(s) 200, 206
Cfr13I GGNCC 3 cut(s) 90, 214, 470
ClaI ATCGAT 1 cut(s) 575
Csp6I GTAC 3 cut(s) 265, 424, 643
CviAII CATG 1 cut(s) 61
CviQI GTAC 3 cut(s) 265, 424, 643
DdeI CTNAG 1 cut(s) 547
DinI GGCGCC 1 cut(s) 205
DpnI GATC 2 cut(s) 43, 578
DpnII GATC 2 cut(s) 41, 576
DriI GACNNNNNGTC 1 cut(s) 34
EaeI YGGCCR 2 cut(s) 47, 480
EagI CGGCCG 1 cut(s) 47
Eam1105I GACNNNNNGTC 1 cut(s) 34
Ecl136II GAGCTC 1 cut(s) 82
EclXI CGGCCG 1 cut(s) 47
Eco24I GRGCYC 2 cut(s) 77, 84
Eco31I GGTCTC 1 cut(s) 664
Eco32I GATATC 1 cut(s) 676
Eco47I GGWCC 2 cut(s) 90, 470
Eco47III AGCGCT 1 cut(s) 626
Eco52I CGGCCG 1 cut(s) 47
Eco53kI GAGCTC 1 cut(s) 82
Eco88I CYCGRG 2 cut(s) 68, 77
EcoICRI GAGCTC 1 cut(s) 82
EcoRII CCWGG 1 cut(s) 534
EcoRV GATATC 1 cut(s) 676
EcoT38I GRGCYC 2 cut(s) 77, 84
EgeI GGCGCC 1 cut(s) 205
EheI GGCGCC 1 cut(s) 205
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 62, 224, 559, 603
FaqI GGGAC 1 cut(s) 456
FatI CATG 1 cut(s) 60
FauI CCCGC 2 cut(s) 267, 356
Fnu4HI GCNGC 4 cut(s) 50, 153, 438, 654
FokI GGATG 2 cut(s) 83, 270
FriOI GRGCYC 2 cut(s) 77, 84
Fsp4HI GCNGC 4 cut(s) 50, 153, 438, 654
FspBI CTAG 1 cut(s) 360
GlaI GCGC 3 cut(s) 205, 352, 626
GluI GCNGC 4 cut(s) 50, 153, 438, 654
HaeII RGCGCY 2 cut(s) 207, 628
HaeIII GGCC 4 cut(s) 49, 215, 450, 482
HapII CCGG 6 cut(s) 19, 39, 46, 201, 207, 483
HhaI GCGC 3 cut(s) 206, 353, 627
Hin1I GRCGYC 1 cut(s) 204
Hin1II CATG 1 cut(s) 64
Hin6I GCGC 3 cut(s) 204, 351, 625
HinP1I GCGC 3 cut(s) 204, 351, 625
HinfI GANTC 3 cut(s) 35, 380, 517
HpaII CCGG 6 cut(s) 19, 39, 46, 201, 207, 483
HphI GGTGA 3 cut(s) 307, 385, 409
Hpy166II GTNNAC 1 cut(s) 426
Hpy188I TCNGA 2 cut(s) 516, 713
Hpy188III TCNNGA 2 cut(s) 39, 70
Hpy8I GTNNAC 1 cut(s) 426
Hpy99I CGWCG 3 cut(s) 152, 164, 641
HpyAV CCTTC 4 cut(s) 103, 253, 361, 484
HpyCH4III ACNGT 2 cut(s) 160, 397
HpyCH4IV ACGT 1 cut(s) 30
HpyCH4V TGCA 2 cut(s) 440, 695
HpyF10VI GCNNNNNNNGC 3 cut(s) 143, 152, 212
HpyF3I CTNAG 1 cut(s) 547
HpySE526I ACGT 1 cut(s) 30
Hsp92I GRCGYC 1 cut(s) 204
Hsp92II CATG 1 cut(s) 64
HspAI GCGC 3 cut(s) 204, 351, 625
KasI GGCGCC 1 cut(s) 203
Kpn2I TCCGGA 1 cut(s) 38
KroI GCCGGC 1 cut(s) 206
KroNI GCCGGC 1 cut(s) 208
Kzo9I GATC 2 cut(s) 41, 576
LmnI GCTCC 3 cut(s) 6, 87, 485
Lsp1109I GCAGC 2 cut(s) 424, 640
LweI GCATC 3 cut(s) 54, 292, 581
MaeI CTAG 1 cut(s) 360
MaeII ACGT 1 cut(s) 30
MalI GATC 2 cut(s) 43, 578
MbiI CCGCTC 1 cut(s) 52
MboI GATC 2 cut(s) 41, 576
MboII GAAGA 2 cut(s) 181, 520
MflI RGATCY 1 cut(s) 41
MhlI GDGCHC 3 cut(s) 77, 84, 260
MluCI AATT 2 cut(s) 292, 408
Mly113I GGCGCC 1 cut(s) 204
MlyI GAGTC 2 cut(s) 44, 389
MmeI TCCRAC 1 cut(s) 151
MnlI CCTC 5 cut(s) 227, 239, 273, 308, 440
MroI TCCGGA 1 cut(s) 38
MroNI GCCGGC 1 cut(s) 206
MslI CAYNNNNRTG 1 cut(s) 398
MspA1I CMGCKG 2 cut(s) 87, 262
MspI CCGG 6 cut(s) 19, 39, 46, 201, 207, 483
MspR9I CCNGG 2 cut(s) 46, 536
MvaI CCWGG 1 cut(s) 536
MwoI GCNNNNNNNGC 3 cut(s) 143, 152, 212
NaeI GCCGGC 1 cut(s) 208
NarI GGCGCC 1 cut(s) 204
NciI CCSGG 1 cut(s) 46
NdeII GATC 2 cut(s) 41, 576
NgoMIV GCCGGC 1 cut(s) 206
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 4 cut(s) 8, 43, 205, 472
OliI CACNNNNGTG 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 68
PasI CCCWGGG 1 cut(s) 535
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 156
PdiI GCCGGC 1 cut(s) 208
PfeI GAWTC 1 cut(s) 517
PkrI GCNGC 4 cut(s) 51, 154, 439, 655
PleI GAGTC 2 cut(s) 43, 388
PluTI GGCGCC 1 cut(s) 207
PpsI GAGTC 2 cut(s) 43, 388
Psp124BI GAGCTC 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 534
PspGI CCWGG 1 cut(s) 534
PspN4I GGNNCC 4 cut(s) 8, 43, 205, 472
PspPI GGNCC 3 cut(s) 90, 214, 470
PsuI RGATCY 1 cut(s) 41
RsaI GTAC 3 cut(s) 266, 425, 644
RsaNI GTAC 3 cut(s) 265, 424, 643
RseI CAYNNNNRTG 1 cut(s) 398
SacI GAGCTC 1 cut(s) 84
SatI GCNGC 4 cut(s) 50, 153, 438, 654
Sau3AI GATC 2 cut(s) 41, 576
Sau96I GGNCC 3 cut(s) 90, 214, 470
SchI GAGTC 2 cut(s) 44, 389
ScrFI CCNGG 2 cut(s) 46, 536
SduI GDGCHC 3 cut(s) 77, 84, 260
SetI ASST 7 cut(s) 33, 84, 300, 372, 525, 546, 687
SfaNI GCATC 3 cut(s) 54, 292, 581
SfoI GGCGCC 1 cut(s) 205
Sfr274I CTCGAG 1 cut(s) 68
SgrAI CRCCGGYG 1 cut(s) 200
SinI GGWCC 2 cut(s) 90, 470
SlaI CTCGAG 1 cut(s) 68
SmiMI CAYNNNNRTG 1 cut(s) 398
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 292, 408
SsiI CCGC 7 cut(s) 50, 85, 100, 153, 260, 363, 656
SspDI GGCGCC 1 cut(s) 203
SspMI CTAG 1 cut(s) 360
SstI GAGCTC 1 cut(s) 84
StyD4I CCNGG 2 cut(s) 44, 534
TaaI ACNGT 2 cut(s) 160, 397
TaiI ACGT 1 cut(s) 33
TaqI TCGA 2 cut(s) 69, 575
TasI AATT 2 cut(s) 292, 408
TatI WGTACW 3 cut(s) 264, 423, 642
TauI GCSGC 2 cut(s) 52, 155
TfiI GAWTC 1 cut(s) 517
TscAI CASTG 1 cut(s) 555
TseI GCWGC 2 cut(s) 437, 653
TspDTI ATGAA 2 cut(s) 85, 235
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 1 cut(s) 555
VpaK11BI GGWCC 2 cut(s) 90, 470
XhoI CTCGAG 1 cut(s) 68
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.