Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Forward (+)

63163732 .. 63166551

Gene Structure 2820 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27260

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGAAGCCAAAGCTTTCGCAGCAGACAAGTTTAAAGCTCTGACGAAATCCACCCAGGACTTCTTCGACAGTCTCATCCATGGGCCTCCTAAACCTCCACCTCGCCGCAATAATCCGATTGCTATATTGAAGCGGTTGCAACGAGAAGCGTTTTCGGACTTGATGAAATTGAGGGATAGACAGGATAAAGTTGAGAAAATTGTGTCCTTGTATGGGACTTCAGGAGGAAAAGGGAGTCCTTTCCAGGAGGCCAACACCCTTATCGGGGGAGAGTTTGATCACTTGGCGGCGTTATCATTCATGCATAATGATGATGAGTCTCATCAAGAATCCGAGGCTCTTAGTCAGGCAGGAATATTAACTGGGATTAAGTCAAGGTTCAGTGTTGAAACAACTGTTCGAGAAAATGATACGCTTGTGGCGGAGTTTGTGGCCAGAGAAAAACACAAAAATGATCTCTCTGATCTTTCAGAATGCTCGCTTTCTCTAGCAAAAGTGGCATATACAGCAAATGTTAGTGATTGGTTATCTGCAATTGCAATCCCAGTGGGAGCTCAATGCAGGGATGTTGCAGTTCTTACACATCCTTCTCATCAGGGAAAGGGCCTAACTCATTTTTCATCATTTGGACCACCTCTTTTAAATGAGCGTAATGGTAGTGCAATTGGCTTGATGGTAAAAAAATCAAATGTTGTTGCTTCATTGGCACAGTTTGTTTCTGGACAAGTAGGTTCTAGTAGAGTCGGGCGCTGCTTCAGCACTTTTGGGCAAGTTGTCTGTCAACTCCCTGCAAGAACAAAGCTCTCACTTCTGGGTCTTCACCAAGTGCCTAAATTATCTAGTGAACATGTCAATCATGCAGCTTCTAACTTTGGATTAGGCGATTTGATACAACATCTATCCCCTGAGACAACAGTTGAAGCATATACTCCACCCCTGGGAACAAGCTCACAGGAAAATGTGTCAACTGGACCAACTGGATCCATCGCTCTGATGCTGGAATCCGAAATTGATGAGATTACAAAGATTGGAGGTTGGATTGAGATGAAGCAATCGAATCCCAAGAATTTAGAATGGGCTGTTACTGTATCTGATGACTCTGAAGATTCCTTTGGATGGGGAGTGAGTTTAAATGGTGGACTGGGAGTCGAAGGCCCTCAAAGTTGGAACCATTTCCAGGTTGAATCCTACTTGAAACTTAACTTGGGTAAGAGACTGAGTGTAAAGCCAGGTATCACAACACATCTAGTGGATGGCAAACCCAGAATGACTGCTCTGATGCTTCGATCTAACTGGTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

434

Amino Acids

47.12

Weight (kDa)

6.54

Isoelectric Point (pI)

33.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	106, 133, 287, 422
AclWI	GGATC	2 cut(s)	975, 988
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	1066
AcuI	CTGAAG	3 cut(s)	204, 739, 1122
AdeI	CACNNNGTG	1 cut(s)	826
AfiI	CCNNNNNNNGG	6 cut(s)	213, 264, 265, 938, 1116, 1177
AflIII	ACRYGT	1 cut(s)	847
AgsI	TTSAA	5 cut(s)	130, 389, 920, 1184, 1195
AhdI	GACNNNNNGTC	1 cut(s)	1145
AjnI	CCWGG	5 cut(s)	54, 243, 936, 1176, 1228
AjuI	GAANNNNNNNTTGG	4 cut(s)	1095, 1127, 1187, 1219
AluBI	AGCT	6 cut(s)	14, 38, 554, 802, 863, 948
AluI	AGCT	6 cut(s)	14, 38, 554, 802, 863, 948
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	4 cut(s)	77, 324, 902, 1207
AlwI	GGATC	2 cut(s)	975, 988
AoxI	GGCC	5 cut(s)	83, 249, 432, 604, 1153
ApeKI	GCWGC	3 cut(s)	20, 750, 860
ApoI	RAATTY	1 cut(s)	1066
Asp700I	GAANNNNTTC	1 cut(s)	1172
AspLEI	GCGC	1 cut(s)	750
AspS9I	GGNCC	5 cut(s)	83, 604, 629, 971, 1154
AsuHPI	GGTGA	1 cut(s)	812
AvaII	GGWCC	2 cut(s)	629, 971
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BalI	TGGCCA	1 cut(s)	434
BamHI	GGATCC	1 cut(s)	980
BanII	GRGCYC	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	809
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	3 cut(s)	32, 737, 872
BccI	CCATC	4 cut(s)	667, 992, 1110, 1247
BciT130I	CCWGG	5 cut(s)	56, 245, 938, 1178, 1230
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	4 cut(s)	77, 324, 902, 1207
BfaI	CTAG	4 cut(s)	488, 735, 840, 1247
BfoI	RGCGCY	1 cut(s)	751
BisI	GCNGC	5 cut(s)	21, 106, 288, 751, 861
BlsI	GCNGC	5 cut(s)	22, 107, 289, 752, 862
Bme1390I	CCNGG	5 cut(s)	56, 245, 938, 1178, 1230
Bme18I	GGWCC	2 cut(s)	629, 971
BmeRI	GACNNNNNGTC	1 cut(s)	1145
BmgT120I	GGNCC	5 cut(s)	83, 604, 629, 971, 1154
BmiI	GGNNCC	3 cut(s)	982, 1169, 1298
BmrFI	CCNGG	5 cut(s)	56, 245, 938, 1178, 1230
BmrI	ACTGGG	3 cut(s)	372, 539, 1151
BmsI	GCATC	2 cut(s)	984, 1269
BmuI	ACTGGG	3 cut(s)	372, 539, 1151
BpiI	GAAGAC	1 cut(s)	809
BsaJI	CCNNGG	5 cut(s)	54, 79, 333, 936, 937
Bsc4I	CCNNNNNNNGG	6 cut(s)	213, 264, 265, 938, 1116, 1177
Bse1I	ACTGG	6 cut(s)	367, 545, 973, 982, 1146, 1298
BseBI	CCWGG	5 cut(s)	56, 245, 938, 1178, 1230
BseDI	CCNNGG	5 cut(s)	54, 79, 333, 936, 937
BseGI	GGATG	5 cut(s)	75, 571, 583, 1121, 1258
BseLI	CCNNNNNNNGG	6 cut(s)	213, 264, 265, 938, 1116, 1177
BseMII	CTCAG	2 cut(s)	897, 1208
BseNI	ACTGG	6 cut(s)	367, 545, 973, 982, 1146, 1298
BseXI	GCAGC	3 cut(s)	32, 737, 872
BshFI	GGCC	5 cut(s)	85, 251, 434, 606, 1155
BsiHKAI	GWGCWC	1 cut(s)	556
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	6 cut(s)	213, 264, 265, 938, 1116, 1177
BsmAI	GTCTC	4 cut(s)	77, 324, 902, 1207
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	5 cut(s)	85, 251, 434, 606, 1155
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	5 cut(s)	277, 454, 463, 980, 1286
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	4 cut(s)	106, 133, 287, 422
BspANI	GGCC	5 cut(s)	85, 251, 434, 606, 1155
BspCNI	CTCAG	2 cut(s)	898, 1209
BspLI	GGNNCC	3 cut(s)	982, 1169, 1298
BspPI	GGATC	2 cut(s)	975, 988
BsrI	ACTGG	6 cut(s)	367, 545, 973, 982, 1146, 1298
BssECI	CCNNGG	5 cut(s)	54, 79, 333, 936, 937
BssMI	GATC	5 cut(s)	277, 454, 463, 980, 1286
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	5 cut(s)	56, 245, 938, 1178, 1230
Bst4CI	ACNGT	5 cut(s)	71, 397, 711, 916, 1087
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	3 cut(s)	341, 906, 1217
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	5 cut(s)	75, 571, 583, 1121, 1258
BstH2I	RGCGCY	1 cut(s)	751
BstHHI	GCGC	1 cut(s)	750
BstKTI	GATC	5 cut(s)	280, 457, 466, 983, 1289
BstMAI	GTCTC	4 cut(s)	77, 324, 902, 1207
BstMBI	GATC	5 cut(s)	277, 454, 463, 980, 1286
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 497, 506, 704, 756
BstNI	CCWGG	5 cut(s)	56, 245, 938, 1178, 1230
BstNSI	RCATGY	1 cut(s)	851
BstSCI	CCNGG	5 cut(s)	54, 243, 936, 1176, 1228
BstV1I	GCAGC	3 cut(s)	32, 737, 872
BstV2I	GAAGAC	1 cut(s)	809
BstX2I	RGATCY	1 cut(s)	980
BstYI	RGATCY	1 cut(s)	980
BsuRI	GGCC	5 cut(s)	85, 251, 434, 606, 1155
BtgI	CCRYGG	1 cut(s)	79
BtgZI	GCGATG	1 cut(s)	970
BtsCI	GGATG	5 cut(s)	75, 571, 583, 1121, 1258
BtsIMutI	CAGTG	2 cut(s)	388, 552
Cac8I	GCNNGC	1 cut(s)	479
CfoI	GCGC	1 cut(s)	750
Cfr13I	GGNCC	5 cut(s)	83, 604, 629, 971, 1154
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviAII	CATG	4 cut(s)	80, 301, 848, 857
DdeI	CTNAG	3 cut(s)	341, 906, 1217
DpnI	GATC	5 cut(s)	279, 456, 465, 982, 1288
DpnII	GATC	5 cut(s)	277, 454, 463, 980, 1286
DraI	TTTAAA	3 cut(s)	34, 642, 1131
DraIII	CACNNNGTG	1 cut(s)	826
DriI	GACNNNNNGTC	1 cut(s)	1145
EaeI	YGGCCR	1 cut(s)	432
Eam1105I	GACNNNNNGTC	1 cut(s)	1145
EciI	GGCGGA	1 cut(s)	437
Ecl136II	GAGCTC	1 cut(s)	554
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	556
Eco47I	GGWCC	2 cut(s)	629, 971
Eco53kI	GAGCTC	1 cut(s)	554
Eco57I	CTGAAG	3 cut(s)	204, 739, 1122
EcoICRI	GAGCTC	1 cut(s)	554
EcoO109I	RGGNCCY	2 cut(s)	604, 1154
EcoRII	CCWGG	5 cut(s)	54, 243, 936, 1176, 1228
EcoT14I	CCWWGG	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	4 cut(s)	83, 304, 851, 860
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	4 cut(s)	79, 300, 847, 856
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	5 cut(s)	21, 106, 288, 751, 861
FokI	GGATG	5 cut(s)	62, 570, 578, 1128, 1265
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	5 cut(s)	21, 106, 288, 751, 861
FspBI	CTAG	4 cut(s)	488, 735, 840, 1247
GlaI	GCGC	1 cut(s)	749
GluI	GCNGC	5 cut(s)	21, 106, 288, 751, 861
HaeII	RGCGCY	1 cut(s)	751
HaeIII	GGCC	5 cut(s)	85, 251, 434, 606, 1155
HhaI	GCGC	1 cut(s)	750
Hin1II	CATG	4 cut(s)	83, 304, 851, 860
Hin6I	GCGC	1 cut(s)	748
HinP1I	GCGC	1 cut(s)	748
HincII	GTYRAC	2 cut(s)	782, 966
HindII	GTYRAC	2 cut(s)	782, 966
HindIII	AAGCTT	1 cut(s)	12
HphI	GGTGA	1 cut(s)	812
Hpy166II	GTNNAC	4 cut(s)	782, 845, 966, 1139
Hpy188III	TCNNGA	4 cut(s)	222, 326, 401, 720
Hpy8I	GTNNAC	4 cut(s)	782, 845, 966, 1139
HpyAV	CCTTC	2 cut(s)	597, 1145
HpyCH4III	ACNGT	5 cut(s)	71, 397, 711, 916, 1087
HpyCH4V	TGCA	9 cut(s)	139, 304, 533, 539, 561, 572, 662, 791, 860
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 497, 506, 704, 756
HpyF3I	CTNAG	3 cut(s)	341, 906, 1217
Hsp92II	CATG	4 cut(s)	83, 304, 851, 860
HspAI	GCGC	1 cut(s)	748
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	277, 454, 463, 980, 1286
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	3 cut(s)	32, 737, 872
LweI	GCATC	2 cut(s)	984, 1269
MaeI	CTAG	4 cut(s)	488, 735, 840, 1247
MaeIII	GTNAC	1 cut(s)	1081
MalI	GATC	5 cut(s)	279, 456, 465, 982, 1288
MboI	GATC	5 cut(s)	277, 454, 463, 980, 1286
MboII	GAAGA	3 cut(s)	55, 809, 1115
MfeI	CAATTG	2 cut(s)	534, 663
MflI	RGATCY	1 cut(s)	980
MhlI	GDGCHC	1 cut(s)	556
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	7 cut(s)	167, 198, 534, 663, 833, 1008, 1066
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	5 cut(s)	244, 326, 750, 1091, 1155
MmeI	TCCRAC	2 cut(s)	1016, 1145
Mox20I	TGGCCA	1 cut(s)	434
Mph1103I	ATGCAT	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	1172
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	6 cut(s)	33, 359, 369, 641, 1130, 1200
MslI	CAYNNNNRTG	2 cut(s)	309, 450
Msp20I	TGGCCA	1 cut(s)	434
MspR9I	CCNGG	5 cut(s)	56, 245, 938, 1178, 1230
MunI	CAATTG	2 cut(s)	534, 663
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	5 cut(s)	56, 245, 938, 1178, 1230
MwoI	GCNNNNNNNGC	5 cut(s)	20, 497, 506, 704, 756
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	5 cut(s)	277, 454, 463, 980, 1286
NlaIII	CATG	4 cut(s)	83, 304, 851, 860
NlaIV	GGNNCC	3 cut(s)	982, 1169, 1298
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	851
PasI	CCCWGGG	1 cut(s)	937
PciI	ACATGT	1 cut(s)	847
PctI	GAATGC	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	1172
PfeI	GAWTC	5 cut(s)	329, 1001, 1057, 1106, 1184
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	5 cut(s)	22, 107, 289, 752, 862
PleI	GAGTC	5 cut(s)	243, 325, 749, 1091, 1154
PpsI	GAGTC	5 cut(s)	243, 325, 749, 1091, 1154
PscI	ACATGT	1 cut(s)	847
Psp124BI	GAGCTC	1 cut(s)	556
Psp6I	CCWGG	5 cut(s)	54, 243, 936, 1176, 1228
PspGI	CCWGG	5 cut(s)	54, 243, 936, 1176, 1228
PspN4I	GGNNCC	3 cut(s)	982, 1169, 1298
PspPI	GGNCC	5 cut(s)	83, 604, 629, 971, 1154
PsuI	RGATCY	1 cut(s)	980
RseI	CAYNNNNRTG	2 cut(s)	309, 450
SacI	GAGCTC	1 cut(s)	556
SaqAI	TTAA	6 cut(s)	33, 359, 369, 641, 1130, 1200
SatI	GCNGC	5 cut(s)	21, 106, 288, 751, 861
Sau3AI	GATC	5 cut(s)	277, 454, 463, 980, 1286
Sau96I	GGNCC	5 cut(s)	83, 604, 629, 971, 1154
SchI	GAGTC	5 cut(s)	244, 326, 750, 1091, 1155
ScrFI	CCNGG	5 cut(s)	56, 245, 938, 1178, 1230
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	2 cut(s)	984, 1269
SinI	GGWCC	2 cut(s)	629, 971
SmiMI	CAYNNNNRTG	2 cut(s)	309, 450
Sse9I	AATT	7 cut(s)	167, 198, 534, 663, 833, 1008, 1066
SsiI	CCGC	4 cut(s)	106, 133, 287, 422
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	4 cut(s)	488, 735, 840, 1247
SstI	GAGCTC	1 cut(s)	556
StyD4I	CCNGG	5 cut(s)	54, 243, 936, 1176, 1228
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	5 cut(s)	71, 397, 711, 916, 1087
TaqI	TCGA	5 cut(s)	66, 400, 1055, 1149, 1285
TasI	AATT	7 cut(s)	167, 198, 534, 663, 833, 1008, 1066
TauI	GCSGC	2 cut(s)	108, 290
TfiI	GAWTC	5 cut(s)	329, 1001, 1057, 1106, 1184
Tru1I	TTAA	6 cut(s)	33, 359, 369, 641, 1130, 1200
Tru9I	TTAA	6 cut(s)	33, 359, 369, 641, 1130, 1200
TscAI	CASTG	2 cut(s)	388, 552
TseI	GCWGC	3 cut(s)	20, 750, 860
TspDTI	ATGAA	5 cut(s)	179, 289, 609, 690, 1061
TspRI	CASTG	2 cut(s)	388, 552
VpaK11BI	GGWCC	2 cut(s)	629, 971
XapI	RAATTY	1 cut(s)	1066
XceI	RCATGY	1 cut(s)	851
XmnI	GAANNNNTTC	1 cut(s)	1172
XspI	CTAG	4 cut(s)	488, 735, 840, 1247
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.