Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Forward (+)

10165622 .. 10167861

Gene Structure 2240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00007980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGAGTCCATACAAGGTTTCACGAAATCGACCCAAGAATTCTTCGACAACCTCATCCACGGCCGTGCAAATTGCCGGAATCCGATTGAAATACTGAAGCGATTGCAAAGAGAGACGTTTTCAGATTTGATGAGACTGAGAGAGAGGCAAGACCAGGTTGAGAGAATGGTGTCCTTGTTTGGGCCTTCTAAAGGAAGCCCATTTCAAGGAGGCAACACCCCTTTAAAGGTAGAAGTTGATTTCTTGGGGGGTTTGTTATGGAAGCATAATGATGATGATGATGATGGGGGTCATCAATACCCTGATGCTCTTAGTAGAGCTGGGATTAGAACTGGGTTTGATTCTAGGTTGAGTATTGAAATAGCGGTGAGGGAGAATGATGCTCTTTTGACTGAGTTTGTGGCCGGTCAGAAGTACAGGAATGATGGTTTTGATGTTTCAGAATGTCAGGTTTCTCTAGCTAAAGTGTCTTATATGGCAAATGTGAGCAATTGGTTGTCTGCCATTGCAATTCCAGTGGGAGCTCGGTGCAGGGACGTCGCGGTTGTTACGAGTCCTTCCCATCAGGGAAAGGGCCTAACTGATCGATCATCATTCGGACCACCTCTTCTAAATGAGTATAATGGCAGTGCAATTGGCATAATGGTGAAAAATGCAAATGTGGTTGTTGCTTCATTGGCTCAGTCTGTTTCGGGACTAGGAGTGCCAGTAGGTTCTGGTAGAGTTGGGCACTGCTTGAGCACTTTTGGTCAAATTGTCTGCCAACTTCCCGGAAACACCAAACTCTCGCTTCTTGGTCTTCACCAAATGCCTAAATCATCAAGTGAACATGTCAATCACGGAGCTCTTTCCGTCCCACCAGGCAGTTTGGAACACCATACATCTCCTCCAACAACGGCTGAAGCATCTGCTCCACCCCTAAGAACAAACTCACAAGGAAACACATCAGCAATTGGATCCATTGCTGTGATGTTCGAATCTGAAATTGACGAGACCACAAAGATTGGGAGTTGGGTTGAGATGAAGAAATTGAATCCCAGGCATTTAGAATGGGCCGTGTCTGTGTCCGATGACTCTAAAGATTCAGTTGGATGGGGAATAAGTTTAAATGGGATGGTTGGAGGTCCCAATAGCTGTGACCATTTTCAGATGGAATCCTACTTGAAATTTAACTTGAGTGAGAGATTCAGTGTAAAGCCTGGTATTGTACACATAATCGATGGCAATGCCAAAATGACTGCCCTTATGCTTAGGTCTAATTGGTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

423

Amino Acids

45.85

Weight (kDa)

6.23

Isoelectric Point (pI)

36.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	540
AccII	CGCG	1 cut(s)	542
AciI	CCGC	2 cut(s)	365, 542
AclWI	GGATC	2 cut(s)	951, 964
AcoI	YGGCCR	2 cut(s)	61, 402
AcsI	RAATTY	2 cut(s)	38, 1166
AcuI	CTGAAG	2 cut(s)	116, 921
AcyI	GRCGYC	1 cut(s)	537
AfaI	GTAC	2 cut(s)	416, 1209
AfiI	CCNNNNNNNGG	4 cut(s)	180, 191, 206, 226
AflIII	ACRYGT	1 cut(s)	829
AgsI	TTSAA	5 cut(s)	89, 206, 359, 1033, 1165
AjnI	CCWGG	4 cut(s)	153, 859, 1037, 1198
AleI	CACNNNNGTG	1 cut(s)	63
AluBI	AGCT	5 cut(s)	320, 461, 524, 845, 1134
AluI	AGCT	5 cut(s)	320, 461, 524, 845, 1134
Alw21I	GWGCWC	3 cut(s)	526, 743, 847
Alw26I	GTCTC	3 cut(s)	107, 127, 986
AlwI	GGATC	2 cut(s)	951, 964
AoxI	GGCC	5 cut(s)	61, 182, 402, 574, 1053
ApoI	RAATTY	2 cut(s)	38, 1166
AspS9I	GGNCC	5 cut(s)	182, 574, 599, 1053, 1124
AsuC2I	CCSGG	1 cut(s)	771
AsuHPI	GGTGA	3 cut(s)	379, 658, 794
AsuII	TTCGAA	1 cut(s)	975
AvaII	GGWCC	2 cut(s)	599, 1124
BaeGI	GKGCMC	1 cut(s)	732
BamHI	GGATCC	1 cut(s)	956
BanII	GRGCYC	2 cut(s)	526, 847
BbsI	GAAGAC	1 cut(s)	791
Bbv12I	GWGCWC	3 cut(s)	526, 743, 847
BccI	CCATC	7 cut(s)	278, 419, 570, 1086, 1108, 1144, 1214
BceAI	ACGGC	4 cut(s)	48, 76, 912, 1040
BcgI	CGANNNNNNTGC	4 cut(s)	520, 554, 1208, 1242
BciT130I	CCWGG	4 cut(s)	155, 861, 1039, 1200
BcnI	CCSGG	1 cut(s)	771
BcoDI	GTCTC	3 cut(s)	107, 127, 986
BfaI	CTAG	3 cut(s)	345, 458, 698
Bme1390I	CCNGG	5 cut(s)	155, 771, 861, 1039, 1200
Bme18I	GGWCC	2 cut(s)	599, 1124
BmgT120I	GGNCC	5 cut(s)	182, 574, 599, 1053, 1124
BmiI	GGNNCC	2 cut(s)	958, 1126
BmrFI	CCNGG	5 cut(s)	155, 771, 861, 1039, 1200
BmrI	ACTGGG	1 cut(s)	342
BmsI	GCATC	3 cut(s)	295, 370, 914
BmuI	ACTGGG	1 cut(s)	342
BpiI	GAAGAC	1 cut(s)	791
Bpu10I	CCTNAGC	1 cut(s)	1250
Bpu14I	TTCGAA	1 cut(s)	975
BpuEI	CTTGAG	2 cut(s)	757, 1195
BpuMI	CCSGG	1 cut(s)	771
Bsa29I	ATCGAT	2 cut(s)	586, 1218
BsaHI	GRCGYC	1 cut(s)	537
BsaI	GGTCTC	1 cut(s)	986
BsaJI	CCNNGG	2 cut(s)	58, 1037
BsaXI	ACNNNNNCTCC	4 cut(s)	693, 723, 871, 901
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 191, 206, 226
Bse118I	RCCGGY	1 cut(s)	404
Bse1I	ACTGG	3 cut(s)	337, 515, 707
Bse3DI	GCAATG	3 cut(s)	504, 960, 1231
BseBI	CCWGG	4 cut(s)	155, 861, 1039, 1200
BseCI	ATCGAT	2 cut(s)	586, 1218
BseDI	CCNNGG	2 cut(s)	58, 1037
BseGI	GGATG	3 cut(s)	54, 1097, 1119
BseLI	CCNNNNNNNGG	4 cut(s)	180, 191, 206, 226
BseMI	GCAATG	3 cut(s)	504, 960, 1231
BseMII	CTCAG	3 cut(s)	128, 384, 695
BseNI	ACTGG	3 cut(s)	337, 515, 707
BseRI	GAGGAG	1 cut(s)	876
BseSI	GKGCMC	1 cut(s)	732
BseX3I	CGGCCG	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	320
BsgI	GTGCAG	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	542
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	5 cut(s)	63, 184, 404, 576, 1055
BshVI	ATCGAT	2 cut(s)	586, 1218
BsiEI	CGRYCG	1 cut(s)	64
BsiHKAI	GWGCWC	3 cut(s)	526, 743, 847
BsiSI	CCGG	3 cut(s)	76, 405, 771
BslFI	GGGAC	4 cut(s)	548, 708, 839, 1110
BslI	CCNNNNNNNGG	4 cut(s)	180, 191, 206, 226
BsmAI	GTCTC	3 cut(s)	107, 127, 986
BsmBI	CGTCTC	1 cut(s)	107
BsmFI	GGGAC	4 cut(s)	548, 708, 839, 1110
BsnI	GGCC	5 cut(s)	63, 184, 404, 576, 1055
Bso31I	GGTCTC	1 cut(s)	986
Bsp119I	TTCGAA	1 cut(s)	975
Bsp1286I	GDGCHC	4 cut(s)	526, 732, 743, 847
Bsp1407I	TGTACA	1 cut(s)	1207
Bsp143I	GATC	3 cut(s)	583, 587, 956
BspACI	CCGC	2 cut(s)	365, 542
BspANI	GGCC	5 cut(s)	63, 184, 404, 576, 1055
BspCNI	CTCAG	3 cut(s)	129, 385, 694
BspDI	ATCGAT	2 cut(s)	586, 1218
BspFNI	CGCG	1 cut(s)	542
BspLI	GGNNCC	2 cut(s)	958, 1126
BspPI	GGATC	2 cut(s)	951, 964
BspT104I	TTCGAA	1 cut(s)	975
BspTNI	GGTCTC	1 cut(s)	986
BsrDI	GCAATG	3 cut(s)	504, 960, 1231
BsrFI	RCCGGY	1 cut(s)	404
BsrGI	TGTACA	1 cut(s)	1207
BsrI	ACTGG	3 cut(s)	337, 515, 707
BssAI	RCCGGY	1 cut(s)	404
BssECI	CCNNGG	2 cut(s)	58, 1037
BssMI	GATC	3 cut(s)	583, 587, 956
BssNI	GRCGYC	1 cut(s)	537
Bst2UI	CCWGG	4 cut(s)	155, 861, 1039, 1200
Bst6I	CTCTTC	1 cut(s)	612
BstACI	GRCGYC	1 cut(s)	537
BstAUI	TGTACA	1 cut(s)	1207
BstBI	TTCGAA	1 cut(s)	975
BstDEI	CTNAG	6 cut(s)	137, 311, 393, 681, 920, 1250
BstDSI	CCRYGG	1 cut(s)	58
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	54, 1097, 1119
BstFNI	CGCG	1 cut(s)	542
BstKTI	GATC	3 cut(s)	586, 590, 959
BstMAI	GTCTC	3 cut(s)	107, 127, 986
BstMBI	GATC	3 cut(s)	583, 587, 956
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	1 cut(s)	677
BstNI	CCWGG	4 cut(s)	155, 861, 1039, 1200
BstNSI	RCATGY	1 cut(s)	833
BstSCI	CCNGG	5 cut(s)	153, 769, 859, 1037, 1198
BstSLI	GKGCMC	1 cut(s)	732
BstUI	CGCG	1 cut(s)	542
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	1 cut(s)	956
BstYI	RGATCY	1 cut(s)	956
BstZI	CGGCCG	1 cut(s)	61
Bsu15I	ATCGAT	2 cut(s)	586, 1218
BsuRI	GGCC	5 cut(s)	63, 184, 404, 576, 1055
BsuTUI	ATCGAT	2 cut(s)	586, 1218
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	3 cut(s)	54, 1097, 1119
BtsI	GCAGTG	2 cut(s)	634, 730
BtsIMutI	CAGTG	4 cut(s)	522, 634, 730, 1195
Cfr10I	RCCGGY	1 cut(s)	404
Cfr13I	GGNCC	5 cut(s)	182, 574, 599, 1053, 1124
ClaI	ATCGAT	2 cut(s)	586, 1218
CsiI	ACCWGGT	1 cut(s)	153
Csp6I	GTAC	2 cut(s)	415, 1208
CspCI	CAANNNNNGTGG	4 cut(s)	498, 533, 985, 1020
CviAII	CATG	1 cut(s)	830
CviQI	GTAC	2 cut(s)	415, 1208
DdeI	CTNAG	6 cut(s)	137, 311, 393, 681, 920, 1250
DpnI	GATC	3 cut(s)	585, 589, 958
DpnII	GATC	3 cut(s)	583, 587, 956
DraI	TTTAAA	2 cut(s)	225, 1107
EaeI	YGGCCR	2 cut(s)	61, 402
EagI	CGGCCG	1 cut(s)	61
Eam1104I	CTCTTC	1 cut(s)	612
EarI	CTCTTC	1 cut(s)	612
Ecl136II	GAGCTC	2 cut(s)	524, 845
EclXI	CGGCCG	1 cut(s)	61
Eco24I	GRGCYC	2 cut(s)	526, 847
Eco31I	GGTCTC	1 cut(s)	986
Eco47I	GGWCC	2 cut(s)	599, 1124
Eco52I	CGGCCG	1 cut(s)	61
Eco53kI	GAGCTC	2 cut(s)	524, 845
Eco57I	CTGAAG	2 cut(s)	116, 921
EcoICRI	GAGCTC	2 cut(s)	524, 845
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	2 cut(s)	574, 1124
EcoRI	GAATTC	1 cut(s)	38
EcoRII	CCWGG	4 cut(s)	153, 859, 1037, 1198
EcoT38I	GRGCYC	2 cut(s)	526, 847
Esp3I	CGTCTC	1 cut(s)	107
FaeI	CATG	1 cut(s)	833
FaqI	GGGAC	4 cut(s)	548, 708, 839, 1110
FatI	CATG	1 cut(s)	829
FokI	GGATG	3 cut(s)	41, 1104, 1126
FriOI	GRGCYC	2 cut(s)	526, 847
FspBI	CTAG	3 cut(s)	345, 458, 698
GsaI	CCCAGC	1 cut(s)	324
HaeIII	GGCC	5 cut(s)	63, 184, 404, 576, 1055
HapII	CCGG	3 cut(s)	76, 405, 771
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	1 cut(s)	833
HpaII	CCGG	3 cut(s)	76, 405, 771
HphI	GGTGA	3 cut(s)	379, 658, 794
Hpy166II	GTNNAC	2 cut(s)	827, 1210
Hpy188I	TCNGA	9 cut(s)	84, 124, 411, 442, 599, 982, 1069, 1149, 1271
Hpy188III	TCNNGA	2 cut(s)	22, 693
Hpy8I	GTNNAC	2 cut(s)	827, 1210
Hpy99I	CGWCG	1 cut(s)	542
HpyAV	CCTTC	2 cut(s)	195, 567
HpyCH4IV	ACGT	2 cut(s)	116, 537
HpyCH4V	TGCA	6 cut(s)	68, 106, 509, 531, 632, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	677
HpyF3I	CTNAG	6 cut(s)	137, 311, 393, 681, 920, 1250
HpySE526I	ACGT	2 cut(s)	116, 537
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	1 cut(s)	833
Kzo9I	GATC	3 cut(s)	583, 587, 956
LmnI	GCTCC	3 cut(s)	521, 842, 916
LweI	GCATC	3 cut(s)	295, 370, 914
MabI	ACCWGGT	1 cut(s)	153
MaeI	CTAG	3 cut(s)	345, 458, 698
MaeII	ACGT	2 cut(s)	116, 537
MaeIII	GTNAC	2 cut(s)	547, 1136
MalI	GATC	3 cut(s)	585, 589, 958
MboI	GATC	3 cut(s)	583, 587, 956
MboII	GAAGA	4 cut(s)	34, 599, 791, 1036
MfeI	CAATTG	3 cut(s)	490, 633, 951
MflI	RGATCY	1 cut(s)	956
MhlI	GDGCHC	4 cut(s)	526, 732, 743, 847
MlyI	GAGTC	3 cut(s)	14, 562, 1067
MmeI	TCCRAC	3 cut(s)	914, 1069, 1099
MnlI	CCTC	7 cut(s)	62, 138, 203, 363, 615, 897, 1115
MseI	TTAA	3 cut(s)	224, 1106, 1170
MslI	CAYNNNNRTG	4 cut(s)	63, 270, 644, 965
MspI	CCGG	3 cut(s)	76, 405, 771
MspR9I	CCNGG	5 cut(s)	155, 771, 861, 1039, 1200
MunI	CAATTG	3 cut(s)	490, 633, 951
MvaI	CCWGG	4 cut(s)	155, 861, 1039, 1200
MvnI	CGCG	1 cut(s)	542
MwoI	GCNNNNNNNGC	1 cut(s)	677
NciI	CCSGG	1 cut(s)	771
NdeII	GATC	3 cut(s)	583, 587, 956
NlaIII	CATG	1 cut(s)	833
NlaIV	GGNNCC	2 cut(s)	958, 1126
NmuCI	GTSAC	1 cut(s)	1136
NspI	RCATGY	1 cut(s)	833
NspV	TTCGAA	1 cut(s)	975
OliI	CACNNNNGTG	1 cut(s)	63
PciI	ACATGT	1 cut(s)	829
PfeI	GAWTC	7 cut(s)	79, 341, 977, 1033, 1082, 1154, 1185
PfoI	TCCNGGA	1 cut(s)	769
PleI	GAGTC	3 cut(s)	13, 561, 1067
PpsI	GAGTC	3 cut(s)	13, 561, 1067
PpuMI	RGGWCCY	1 cut(s)	1124
PscI	ACATGT	1 cut(s)	829
Psp124BI	GAGCTC	2 cut(s)	526, 847
Psp5II	RGGWCCY	1 cut(s)	1124
Psp6I	CCWGG	4 cut(s)	153, 859, 1037, 1198
PspFI	CCCAGC	1 cut(s)	320
PspGI	CCWGG	4 cut(s)	153, 859, 1037, 1198
PspN4I	GGNNCC	2 cut(s)	958, 1126
PspPI	GGNCC	5 cut(s)	182, 574, 599, 1053, 1124
PspPPI	RGGWCCY	1 cut(s)	1124
PsuI	RGATCY	1 cut(s)	956
RsaI	GTAC	2 cut(s)	416, 1209
RsaNI	GTAC	2 cut(s)	415, 1208
RseI	CAYNNNNRTG	4 cut(s)	63, 270, 644, 965
SacI	GAGCTC	2 cut(s)	526, 847
SaqAI	TTAA	3 cut(s)	224, 1106, 1170
Sau3AI	GATC	3 cut(s)	583, 587, 956
Sau96I	GGNCC	5 cut(s)	182, 574, 599, 1053, 1124
SchI	GAGTC	3 cut(s)	14, 562, 1067
ScrFI	CCNGG	5 cut(s)	155, 771, 861, 1039, 1200
SduI	GDGCHC	4 cut(s)	526, 732, 743, 847
SexAI	ACCWGGT	1 cut(s)	153
SfaNI	GCATC	3 cut(s)	295, 370, 914
SfuI	TTCGAA	1 cut(s)	975
SinI	GGWCC	2 cut(s)	599, 1124
SmiMI	CAYNNNNRTG	4 cut(s)	63, 270, 644, 965
SmlI	CTYRAG	2 cut(s)	736, 1174
SmoI	CTYRAG	2 cut(s)	736, 1174
SsiI	CCGC	2 cut(s)	365, 542
SspMI	CTAG	3 cut(s)	345, 458, 698
SstI	GAGCTC	2 cut(s)	526, 847
StyD4I	CCNGG	5 cut(s)	153, 769, 859, 1037, 1198
TaiI	ACGT	2 cut(s)	119, 540
TaqI	TCGA	5 cut(s)	29, 45, 586, 975, 1218
TatI	WGTACW	2 cut(s)	414, 1207
TfiI	GAWTC	7 cut(s)	79, 341, 977, 1033, 1082, 1154, 1185
Tru1I	TTAA	3 cut(s)	224, 1106, 1170
Tru9I	TTAA	3 cut(s)	224, 1106, 1170
TscAI	CASTG	4 cut(s)	522, 634, 737, 1195
TseFI	GTSAC	1 cut(s)	1136
Tsp45I	GTSAC	1 cut(s)	1136
TspDTI	ATGAA	2 cut(s)	663, 1037
TspGWI	ACGGA	2 cut(s)	841, 855
TspRI	CASTG	4 cut(s)	522, 634, 737, 1195
VpaK11BI	GGWCC	2 cut(s)	599, 1124
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	2 cut(s)	38, 1166
XceI	RCATGY	1 cut(s)	833
XspI	CTAG	3 cut(s)	345, 458, 698
ZraI	GACGTC	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.