Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Reverse (-)

6640765 .. 6643072

Gene Structure 2308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGGAAGCCAAAGCTTTCGCAGCAGACAAGTTTAAAGCTCTGACGAAATCCACCCAGGACTTCTTCGACAGTCTCATCCATGGGCCTCCTAAACCTCCACCTCGCCGCAATAATCCGATTGCTATATTGAAGCGGTTGCAACGAGAAGCGTTTTCGGACTTGATGAAATTGAGGGATAGACAGGATAAAGTTGAGAAAATTGTGTCCTTGTATGGGACTTCAGGAGGAAAAGCGAGTCCTTTCCAGGAGGCCAACACCCTTATCAGGGGAGAGTTTGATCACATGGGGGCGTTATCATTCATGCATAATGATGATGAGTCTCATCAAGAATCCGAGGCTCTTAGTCAGGCAGGAATATTAACTGGGATTAAGTCAAGGTTCAGTGTTGAAACAACTGTTCGAGAAAATGATACGCTTGTGGCAGAGTTTGTGGCCAGTGAAAAACACAAAAATGATCTCTCTGATCTTTCAGAATGCTCGCTTTCTCTAGCAAAAGTGGCTTATACAGCAAATGTTAGTGATTGGTTATCTGCAATTGCAATCCCAGTGGGAGCTCAGTGCAGGGATGTTGCAGTTCTTACAAATCCTTCTCATCAGGGAAAGGGCCTAACTCATTTTTCATCATTTGGACCACCTCTTTTAAATGAGCGTAATGGTAGTGCAATTGGCTTGATGGTAAAAAAATTAAATGTTGTTGCTTCATTGGCACAGTTTGTTTCTGGACAAGTAGGTTCTAGTAGAGTCGGGCGCTGCTTCAGCACTTTTGGGCAAGTTGTCTGTCAACTCCCTGCAAGAACAAGGCTCTCACTTCTGGGTCTTCATCAAGCGCCTAAATTATCTAGTGAACATGTCAATCATGTAGCTTCTAACTTTGGATTAGGCGATTTGATACAACATCTATCCCCTGAGACAACAGTTGAAGCATATTTTCCACCCCTGGGAACAAGCTCACAGGAAAATGTGTCAACAGGACCAACTGGATCCATTGCTCTGATGCTGGAATCCGAAATTGATGAGATTACAAAGATTGGAGGTTGGATTGAGATGAAGCAATCGAATCCCAAGAATTTAGAATGGGCTGTCACAGTATCCGATGACTCTGAGTCTGAAGATTCCTTTGGATGGGGAGTGAGTTTAAATGGGGGACTGGGAGTGAGTTTAAATGGGGGACTGGGAGTCGAAGGCCCCCAAAGTTGGAACCATTTCCAGGTTGAATCCTACTTGAAACTTAACTTGGGAAAGAGACTGAGTGTAAAGCCAGGTATCACCACACATCTAGTGGATGGCAAACCCAGAATGACTGCTCTGATGCTGCGATCTAACTGGTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

445

Amino Acids

48.16

Weight (kDa)

6.37

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	106, 133
AclWI	GGATC	2 cut(s)	975, 988
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	1066
AcuI	CTGAAG	3 cut(s)	204, 739, 1128
AfiI	CCNNNNNNNGG	7 cut(s)	213, 264, 265, 938, 1122, 1194, 1207
AflIII	ACRYGT	1 cut(s)	847
AgsI	TTSAA	5 cut(s)	130, 389, 920, 1214, 1225
AhdI	GACNNNNNGTC	2 cut(s)	1102, 1175
AjnI	CCWGG	5 cut(s)	54, 243, 936, 1206, 1258
AjuI	GAANNNNNNNTTGG	4 cut(s)	1101, 1133, 1217, 1249
AluBI	AGCT	5 cut(s)	14, 38, 554, 863, 948
AluI	AGCT	5 cut(s)	14, 38, 554, 863, 948
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	4 cut(s)	77, 324, 902, 1237
AlwI	GGATC	2 cut(s)	975, 988
AoxI	GGCC	5 cut(s)	83, 249, 432, 604, 1183
ApeKI	GCWGC	3 cut(s)	20, 750, 1312
ApoI	RAATTY	1 cut(s)	1066
Asp700I	GAANNNNTTC	1 cut(s)	1202
AspLEI	GCGC	2 cut(s)	750, 829
AspS9I	GGNCC	5 cut(s)	83, 604, 629, 971, 1184
AsuHPI	GGTGA	1 cut(s)	1258
AvaII	GGWCC	2 cut(s)	629, 971
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BalI	TGGCCA	1 cut(s)	434
BamHI	GGATCC	1 cut(s)	980
BanII	GRGCYC	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	809
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	3 cut(s)	32, 737, 1299
BccI	CCATC	3 cut(s)	667, 1116, 1277
BciT130I	CCWGG	5 cut(s)	56, 245, 938, 1208, 1260
BciVI	GTATCC	1 cut(s)	1099
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	4 cut(s)	77, 324, 902, 1237
BfaI	CTAG	4 cut(s)	488, 735, 840, 1277
BfoI	RGCGCY	2 cut(s)	751, 830
BfuI	GTATCC	1 cut(s)	1099
BisI	GCNGC	4 cut(s)	21, 106, 751, 1313
BlsI	GCNGC	4 cut(s)	22, 107, 752, 1314
Bme1390I	CCNGG	5 cut(s)	56, 245, 938, 1208, 1260
Bme18I	GGWCC	2 cut(s)	629, 971
BmeRI	GACNNNNNGTC	2 cut(s)	1102, 1175
BmgT120I	GGNCC	5 cut(s)	83, 604, 629, 971, 1184
BmiI	GGNNCC	4 cut(s)	982, 1186, 1199, 1328
BmrFI	CCNGG	5 cut(s)	56, 245, 938, 1208, 1260
BmrI	ACTGGG	4 cut(s)	372, 539, 1157, 1181
BmsI	GCATC	2 cut(s)	984, 1299
BmuI	ACTGGG	4 cut(s)	372, 539, 1157, 1181
BpiI	GAAGAC	1 cut(s)	809
BsaJI	CCNNGG	5 cut(s)	54, 79, 333, 936, 937
Bsc4I	CCNNNNNNNGG	7 cut(s)	213, 264, 265, 938, 1122, 1194, 1207
Bse1I	ACTGG	7 cut(s)	367, 435, 545, 982, 1152, 1176, 1328
Bse3DI	GCAATG	1 cut(s)	984
BseBI	CCWGG	5 cut(s)	56, 245, 938, 1208, 1260
BseDI	CCNNGG	5 cut(s)	54, 79, 333, 936, 937
BseGI	GGATG	4 cut(s)	75, 571, 1127, 1288
BseLI	CCNNNNNNNGG	7 cut(s)	213, 264, 265, 938, 1122, 1194, 1207
BseMI	GCAATG	1 cut(s)	984
BseMII	CTCAG	4 cut(s)	569, 897, 1092, 1238
BseNI	ACTGG	7 cut(s)	367, 435, 545, 982, 1152, 1176, 1328
BseXI	GCAGC	3 cut(s)	32, 737, 1299
BsgI	GTGCAG	1 cut(s)	580
BshFI	GGCC	5 cut(s)	85, 251, 434, 606, 1185
BsiHKAI	GWGCWC	1 cut(s)	556
BslFI	GGGAC	3 cut(s)	229, 1158, 1182
BslI	CCNNNNNNNGG	7 cut(s)	213, 264, 265, 938, 1122, 1194, 1207
BsmAI	GTCTC	4 cut(s)	77, 324, 902, 1237
BsmFI	GGGAC	3 cut(s)	229, 1158, 1182
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	5 cut(s)	85, 251, 434, 606, 1185
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	5 cut(s)	277, 454, 463, 980, 1316
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	2 cut(s)	106, 133
BspANI	GGCC	5 cut(s)	85, 251, 434, 606, 1185
BspCNI	CTCAG	4 cut(s)	568, 898, 1093, 1239
BspLI	GGNNCC	4 cut(s)	982, 1186, 1199, 1328
BspPI	GGATC	2 cut(s)	975, 988
BsrDI	GCAATG	1 cut(s)	984
BsrI	ACTGG	7 cut(s)	367, 435, 545, 982, 1152, 1176, 1328
BssECI	CCNNGG	5 cut(s)	54, 79, 333, 936, 937
BssMI	GATC	5 cut(s)	277, 454, 463, 980, 1316
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	5 cut(s)	56, 245, 938, 1208, 1260
Bst4CI	ACNGT	5 cut(s)	71, 397, 711, 916, 1087
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	5 cut(s)	341, 555, 906, 1101, 1247
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	4 cut(s)	75, 571, 1127, 1288
BstH2I	RGCGCY	2 cut(s)	751, 830
BstHHI	GCGC	2 cut(s)	750, 829
BstKTI	GATC	5 cut(s)	280, 457, 466, 983, 1319
BstMAI	GTCTC	4 cut(s)	77, 324, 902, 1237
BstMBI	GATC	5 cut(s)	277, 454, 463, 980, 1316
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 497, 506, 704, 756
BstNI	CCWGG	5 cut(s)	56, 245, 938, 1208, 1260
BstNSI	RCATGY	1 cut(s)	851
BstSCI	CCNGG	5 cut(s)	54, 243, 936, 1206, 1258
BstV1I	GCAGC	3 cut(s)	32, 737, 1299
BstV2I	GAAGAC	1 cut(s)	809
BstX2I	RGATCY	1 cut(s)	980
BstYI	RGATCY	1 cut(s)	980
BsuI	GTATCC	1 cut(s)	1099
BsuRI	GGCC	5 cut(s)	85, 251, 434, 606, 1185
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	4 cut(s)	75, 571, 1127, 1288
BtsIMutI	CAGTG	4 cut(s)	388, 442, 552, 563
Cac8I	GCNNGC	1 cut(s)	479
CfoI	GCGC	2 cut(s)	750, 829
Cfr13I	GGNCC	5 cut(s)	83, 604, 629, 971, 1184
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviAII	CATG	5 cut(s)	80, 283, 301, 848, 857
DdeI	CTNAG	5 cut(s)	341, 555, 906, 1101, 1247
DpnI	GATC	5 cut(s)	279, 456, 465, 982, 1318
DpnII	GATC	5 cut(s)	277, 454, 463, 980, 1316
DraI	TTTAAA	4 cut(s)	34, 642, 1137, 1161
DriI	GACNNNNNGTC	2 cut(s)	1102, 1175
EaeI	YGGCCR	1 cut(s)	432
Eam1105I	GACNNNNNGTC	2 cut(s)	1102, 1175
Ecl136II	GAGCTC	1 cut(s)	554
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	556
Eco47I	GGWCC	2 cut(s)	629, 971
Eco53kI	GAGCTC	1 cut(s)	554
Eco57I	CTGAAG	3 cut(s)	204, 739, 1128
EcoICRI	GAGCTC	1 cut(s)	554
EcoO109I	RGGNCCY	2 cut(s)	604, 1184
EcoRII	CCWGG	5 cut(s)	54, 243, 936, 1206, 1258
EcoT14I	CCWWGG	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	5 cut(s)	83, 286, 304, 851, 860
FaqI	GGGAC	3 cut(s)	229, 1158, 1182
FatI	CATG	5 cut(s)	79, 282, 300, 847, 856
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	21, 106, 751, 1313
FokI	GGATG	4 cut(s)	62, 578, 1134, 1295
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	4 cut(s)	21, 106, 751, 1313
FspBI	CTAG	4 cut(s)	488, 735, 840, 1277
GlaI	GCGC	2 cut(s)	749, 828
GluI	GCNGC	4 cut(s)	21, 106, 751, 1313
HaeII	RGCGCY	2 cut(s)	751, 830
HaeIII	GGCC	5 cut(s)	85, 251, 434, 606, 1185
HhaI	GCGC	2 cut(s)	750, 829
Hin1II	CATG	5 cut(s)	83, 286, 304, 851, 860
Hin6I	GCGC	2 cut(s)	748, 827
HinP1I	GCGC	2 cut(s)	748, 827
HincII	GTYRAC	2 cut(s)	782, 966
HindII	GTYRAC	2 cut(s)	782, 966
HindIII	AAGCTT	1 cut(s)	12
HphI	GGTGA	1 cut(s)	1258
Hpy166II	GTNNAC	3 cut(s)	782, 845, 966
Hpy188III	TCNNGA	4 cut(s)	222, 326, 401, 720
Hpy8I	GTNNAC	3 cut(s)	782, 845, 966
HpyAV	CCTTC	2 cut(s)	597, 1175
HpyCH4III	ACNGT	5 cut(s)	71, 397, 711, 916, 1087
HpyCH4V	TGCA	8 cut(s)	139, 304, 533, 539, 561, 572, 662, 791
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 497, 506, 704, 756
HpyF3I	CTNAG	5 cut(s)	341, 555, 906, 1101, 1247
Hsp92II	CATG	5 cut(s)	83, 286, 304, 851, 860
HspAI	GCGC	2 cut(s)	748, 827
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	277, 454, 463, 980, 1316
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	3 cut(s)	32, 737, 1299
LweI	GCATC	2 cut(s)	984, 1299
MaeI	CTAG	4 cut(s)	488, 735, 840, 1277
MaeIII	GTNAC	1 cut(s)	1081
MalI	GATC	5 cut(s)	279, 456, 465, 982, 1318
MboI	GATC	5 cut(s)	277, 454, 463, 980, 1316
MboII	GAAGA	3 cut(s)	55, 809, 1121
MfeI	CAATTG	2 cut(s)	534, 663
MflI	RGATCY	1 cut(s)	980
MhlI	GDGCHC	1 cut(s)	556
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	8 cut(s)	167, 198, 534, 663, 683, 833, 1008, 1066
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	6 cut(s)	244, 326, 750, 1091, 1112, 1185
MmeI	TCCRAC	2 cut(s)	1016, 1175
MnlI	CCTC	9 cut(s)	96, 105, 111, 165, 218, 241, 328, 645, 1025
Mox20I	TGGCCA	1 cut(s)	434
Mph1103I	ATGCAT	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	1202
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	8 cut(s)	33, 359, 369, 641, 686, 1136, 1160, 1230
MslI	CAYNNNNRTG	2 cut(s)	309, 450
Msp20I	TGGCCA	1 cut(s)	434
MspR9I	CCNGG	5 cut(s)	56, 245, 938, 1208, 1260
MunI	CAATTG	2 cut(s)	534, 663
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	5 cut(s)	56, 245, 938, 1208, 1260
MwoI	GCNNNNNNNGC	5 cut(s)	20, 497, 506, 704, 756
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	5 cut(s)	277, 454, 463, 980, 1316
NlaIII	CATG	5 cut(s)	83, 286, 304, 851, 860
NlaIV	GGNNCC	4 cut(s)	982, 1186, 1199, 1328
NmuCI	GTSAC	1 cut(s)	1081
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	851
PasI	CCCWGGG	1 cut(s)	937
PciI	ACATGT	1 cut(s)	847
PctI	GAATGC	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	1202
PfeI	GAWTC	5 cut(s)	329, 1001, 1057, 1112, 1214
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	4 cut(s)	22, 107, 752, 1314
PleI	GAGTC	6 cut(s)	243, 325, 749, 1091, 1111, 1184
PpsI	GAGTC	6 cut(s)	243, 325, 749, 1091, 1111, 1184
PscI	ACATGT	1 cut(s)	847
Psp124BI	GAGCTC	1 cut(s)	556
Psp6I	CCWGG	5 cut(s)	54, 243, 936, 1206, 1258
PspGI	CCWGG	5 cut(s)	54, 243, 936, 1206, 1258
PspN4I	GGNNCC	4 cut(s)	982, 1186, 1199, 1328
PspPI	GGNCC	5 cut(s)	83, 604, 629, 971, 1184
PsuI	RGATCY	1 cut(s)	980
RseI	CAYNNNNRTG	2 cut(s)	309, 450
SacI	GAGCTC	1 cut(s)	556
SaqAI	TTAA	8 cut(s)	33, 359, 369, 641, 686, 1136, 1160, 1230
SatI	GCNGC	4 cut(s)	21, 106, 751, 1313
Sau3AI	GATC	5 cut(s)	277, 454, 463, 980, 1316
Sau96I	GGNCC	5 cut(s)	83, 604, 629, 971, 1184
SchI	GAGTC	6 cut(s)	244, 326, 750, 1091, 1112, 1185
ScrFI	CCNGG	5 cut(s)	56, 245, 938, 1208, 1260
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	2 cut(s)	984, 1299
SinI	GGWCC	2 cut(s)	629, 971
SmiMI	CAYNNNNRTG	2 cut(s)	309, 450
Sse9I	AATT	8 cut(s)	167, 198, 534, 663, 683, 833, 1008, 1066
SsiI	CCGC	2 cut(s)	106, 133
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	4 cut(s)	488, 735, 840, 1277
SstI	GAGCTC	1 cut(s)	556
StyD4I	CCNGG	5 cut(s)	54, 243, 936, 1206, 1258
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	5 cut(s)	71, 397, 711, 916, 1087
TaqI	TCGA	4 cut(s)	66, 400, 1055, 1179
TasI	AATT	8 cut(s)	167, 198, 534, 663, 683, 833, 1008, 1066
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	5 cut(s)	329, 1001, 1057, 1112, 1214
Tru1I	TTAA	8 cut(s)	33, 359, 369, 641, 686, 1136, 1160, 1230
Tru9I	TTAA	8 cut(s)	33, 359, 369, 641, 686, 1136, 1160, 1230
TscAI	CASTG	4 cut(s)	388, 442, 552, 563
TseFI	GTSAC	1 cut(s)	1081
TseI	GCWGC	3 cut(s)	20, 750, 1312
Tsp45I	GTSAC	1 cut(s)	1081
TspDTI	ATGAA	6 cut(s)	179, 289, 609, 690, 809, 1061
TspRI	CASTG	4 cut(s)	388, 442, 552, 563
VpaK11BI	GGWCC	2 cut(s)	629, 971
XapI	RAATTY	1 cut(s)	1066
XceI	RCATGY	1 cut(s)	851
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1276
XmnI	GAANNNNTTC	1 cut(s)	1202
XspI	CTAG	4 cut(s)	488, 735, 840, 1277
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.