Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Forward (+)

61310830 .. 61313597

Gene Structure 2768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG434400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGAAGCTTTACAAGGTCTACATGTTGTGGAATTTTCAGATTGCTATATTGAAGCGGTTGCAACGAGAAGCGTTTTCGGACTTGATGAAATTGAGGGATAGACAGGATAAAGTTGAGAAAATTGTGTCCTTGTATGGGACTTCAGGAGGAAAAGGGAGTCCTTTCCAGGAGGCCAACACCCTTATCAGGGGAGAGTTTGATCACTTGGGGGCGTTATCATTCATGCATAATGATGATGAGTCTCATCAAGAATCCGAGGCTCTTAGTCAGGCAGGAATATTAACTGGGATTAAGTCAAGGTTCAGTGTTGAAACAACTGTTCGAGAAAATGATACGCTTGTGGCAGAGTTTGTGGCCAGTGAAAAACACAAAAATGATCTCTCTGATCTTTCAGAATGCTCACTTTCTCTAGCAAAAGTGGCATATACAGCAAATGTTAGTGATTGGTTATCTGCAATTGCAATCCCAGTGGGAGCTCAATGCAGGGATGTCGCAGTTCTTACAAATCCTTCTCATCAGGGAAAGGGCCTAACTCATTTTTCATCATTTGGACCACCTCTTTTAAATGAGCGTAATGGTAGTGCAATTGGCTTGATGGTAAAAAAATCAAATGTTGTTGCTTCATTGGCACAGTTTGTTTCTGGACAAGTAGGTTCTAGTAGAGTCGGGCGCTGCTTCAGCACTTTTGGGCAAGTTGTCTGTCAACTCCCTGCAAGAACAAAGCTCTCACTTCTGGGTCTTCACCAAGCGCCTAAATTATCTAGTGAACATGTCAATCATGTAGCTTCTAACTTTGGATTAGGCGATTTGATACAACATCTATCCCCTGAGACAACAGTTGAAGCATATACTCCACCCCTGGGAACAAGCTCACAGGAAAATGTGTCAACTGGACCAACTGGATCCATTGCTCTGATGCTGGAATCCGAAATTGATGAGATTACAAAGATTGGAGGTTGGATTGAGATGAAGCAATCGAATCCCAAGAATTTAGAATGGGCTGTTACCGTATCTGATGACTCTGAAGATTCCTTTGGATGGGGAGTGAGTTTAAATGGTGGACTGGGAGTCGAAGGCCCCCAAAGTTGGAACCATTTCCAGGTTGAATCCTACTTGAAACTTAACTTGGGTAAGAGACTGAGTGTAAAGCCAGGTATCACAACACATCTAGTGGATGGCAAACCCAGAATGACTGCTCTGATGCTTCGATCTAACCGGTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

408

Amino Acids

44.48

Weight (kDa)

6.47

Isoelectric Point (pI)

32.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AciI	CCGC	1 cut(s)	55
AclWI	GGATC	2 cut(s)	897, 910
AcoI	YGGCCR	1 cut(s)	354
AcsI	RAATTY	2 cut(s)	31, 988
AcuI	CTGAAG	3 cut(s)	126, 661, 1044
AfiI	CCNNNNNNNGG	7 cut(s)	135, 186, 187, 860, 1038, 1086, 1099
AflIII	ACRYGT	2 cut(s)	21, 769
AgeI	ACCGGT	1 cut(s)	1215
AgsI	TTSAA	5 cut(s)	52, 311, 842, 1106, 1117
AhdI	GACNNNNNGTC	1 cut(s)	1067
AjnI	CCWGG	4 cut(s)	165, 858, 1098, 1150
AjuI	GAANNNNNNNTTGG	4 cut(s)	1017, 1049, 1109, 1141
AluBI	AGCT	5 cut(s)	7, 476, 724, 785, 870
AluI	AGCT	5 cut(s)	7, 476, 724, 785, 870
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	3 cut(s)	246, 824, 1129
AlwI	GGATC	2 cut(s)	897, 910
AoxI	GGCC	4 cut(s)	171, 354, 526, 1075
ApeKI	GCWGC	1 cut(s)	672
ApoI	RAATTY	2 cut(s)	31, 988
AsiGI	ACCGGT	1 cut(s)	1215
Asp700I	GAANNNNTTC	1 cut(s)	1094
AspLEI	GCGC	2 cut(s)	672, 751
AspS9I	GGNCC	4 cut(s)	526, 551, 893, 1076
AsuHPI	GGTGA	1 cut(s)	734
AvaII	GGWCC	2 cut(s)	551, 893
BaeI	ACNNNNGTAYC	2 cut(s)	324, 357
BalI	TGGCCA	1 cut(s)	356
BamHI	GGATCC	1 cut(s)	902
BanII	GRGCYC	1 cut(s)	478
BbsI	GAAGAC	1 cut(s)	731
Bbv12I	GWGCWC	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	659
BccI	CCATC	3 cut(s)	589, 1032, 1169
BcgI	CGANNNNNNTGC	2 cut(s)	472, 506
BciT130I	CCWGG	4 cut(s)	167, 860, 1100, 1152
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	246, 824, 1129
BfaI	CTAG	4 cut(s)	410, 657, 762, 1169
BfoI	RGCGCY	2 cut(s)	673, 752
BisI	GCNGC	1 cut(s)	673
BlsI	GCNGC	1 cut(s)	674
Bme1390I	CCNGG	4 cut(s)	167, 860, 1100, 1152
Bme18I	GGWCC	2 cut(s)	551, 893
BmeRI	GACNNNNNGTC	1 cut(s)	1067
BmgT120I	GGNCC	4 cut(s)	526, 551, 893, 1076
BmiI	GGNNCC	4 cut(s)	904, 1078, 1091, 1220
BmrFI	CCNGG	4 cut(s)	167, 860, 1100, 1152
BmrI	ACTGGG	3 cut(s)	294, 461, 1073
BmsI	GCATC	2 cut(s)	906, 1191
BmuI	ACTGGG	3 cut(s)	294, 461, 1073
BpiI	GAAGAC	1 cut(s)	731
BsaJI	CCNNGG	3 cut(s)	255, 858, 859
BsaWI	WCCGGW	1 cut(s)	1215
Bsc4I	CCNNNNNNNGG	7 cut(s)	135, 186, 187, 860, 1038, 1086, 1099
Bse118I	RCCGGY	1 cut(s)	1215
Bse1I	ACTGG	6 cut(s)	289, 357, 467, 895, 904, 1068
Bse3DI	GCAATG	1 cut(s)	906
BseBI	CCWGG	4 cut(s)	167, 860, 1100, 1152
BseDI	CCNNGG	3 cut(s)	255, 858, 859
BseGI	GGATG	3 cut(s)	493, 1043, 1180
BseLI	CCNNNNNNNGG	7 cut(s)	135, 186, 187, 860, 1038, 1086, 1099
BseMI	GCAATG	1 cut(s)	906
BseMII	CTCAG	2 cut(s)	819, 1130
BseNI	ACTGG	6 cut(s)	289, 357, 467, 895, 904, 1068
BseXI	GCAGC	1 cut(s)	659
BshFI	GGCC	4 cut(s)	173, 356, 528, 1077
BshTI	ACCGGT	1 cut(s)	1215
BsiHKAI	GWGCWC	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	1216
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	7 cut(s)	135, 186, 187, 860, 1038, 1086, 1099
BsmAI	GTCTC	3 cut(s)	246, 824, 1129
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	4 cut(s)	173, 356, 528, 1077
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	5 cut(s)	199, 376, 385, 902, 1208
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	4 cut(s)	173, 356, 528, 1077
BspCNI	CTCAG	2 cut(s)	820, 1131
BspLI	GGNNCC	4 cut(s)	904, 1078, 1091, 1220
BspPI	GGATC	2 cut(s)	897, 910
BsrDI	GCAATG	1 cut(s)	906
BsrFI	RCCGGY	1 cut(s)	1215
BsrI	ACTGG	6 cut(s)	289, 357, 467, 895, 904, 1068
BssAI	RCCGGY	1 cut(s)	1215
BssECI	CCNNGG	3 cut(s)	255, 858, 859
BssMI	GATC	5 cut(s)	199, 376, 385, 902, 1208
Bst2UI	CCWGG	4 cut(s)	167, 860, 1100, 1152
Bst4CI	ACNGT	4 cut(s)	319, 633, 838, 1009
BstDEI	CTNAG	3 cut(s)	263, 828, 1139
BstF5I	GGATG	3 cut(s)	493, 1043, 1180
BstH2I	RGCGCY	2 cut(s)	673, 752
BstHHI	GCGC	2 cut(s)	672, 751
BstKTI	GATC	5 cut(s)	202, 379, 388, 905, 1211
BstMAI	GTCTC	3 cut(s)	246, 824, 1129
BstMBI	GATC	5 cut(s)	199, 376, 385, 902, 1208
BstMWI	GCNNNNNNNGC	4 cut(s)	419, 428, 626, 678
BstNI	CCWGG	4 cut(s)	167, 860, 1100, 1152
BstNSI	RCATGY	2 cut(s)	25, 773
BstSCI	CCNGG	4 cut(s)	165, 858, 1098, 1150
BstV1I	GCAGC	1 cut(s)	659
BstV2I	GAAGAC	1 cut(s)	731
BstX2I	RGATCY	1 cut(s)	902
BstYI	RGATCY	1 cut(s)	902
BsuRI	GGCC	4 cut(s)	173, 356, 528, 1077
BtsCI	GGATG	3 cut(s)	493, 1043, 1180
BtsIMutI	CAGTG	3 cut(s)	310, 364, 474
CfoI	GCGC	2 cut(s)	672, 751
Cfr10I	RCCGGY	1 cut(s)	1215
Cfr13I	GGNCC	4 cut(s)	526, 551, 893, 1076
CspAI	ACCGGT	1 cut(s)	1215
CspCI	CAANNNNNGTGG	2 cut(s)	450, 485
CviAII	CATG	4 cut(s)	22, 223, 770, 779
DdeI	CTNAG	3 cut(s)	263, 828, 1139
DpnI	GATC	5 cut(s)	201, 378, 387, 904, 1210
DpnII	GATC	5 cut(s)	199, 376, 385, 902, 1208
DraI	TTTAAA	2 cut(s)	564, 1053
DriI	GACNNNNNGTC	1 cut(s)	1067
EaeI	YGGCCR	1 cut(s)	354
Eam1105I	GACNNNNNGTC	1 cut(s)	1067
Ecl136II	GAGCTC	1 cut(s)	476
Eco24I	GRGCYC	1 cut(s)	478
Eco47I	GGWCC	2 cut(s)	551, 893
Eco53kI	GAGCTC	1 cut(s)	476
Eco57I	CTGAAG	3 cut(s)	126, 661, 1044
EcoICRI	GAGCTC	1 cut(s)	476
EcoO109I	RGGNCCY	2 cut(s)	526, 1076
EcoRII	CCWGG	4 cut(s)	165, 858, 1098, 1150
EcoT22I	ATGCAT	1 cut(s)	228
EcoT38I	GRGCYC	1 cut(s)	478
FaeI	CATG	4 cut(s)	25, 226, 773, 782
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	4 cut(s)	21, 222, 769, 778
FbaI	TGATCA	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	673
FokI	GGATG	3 cut(s)	500, 1050, 1187
FriOI	GRGCYC	1 cut(s)	478
Fsp4HI	GCNGC	1 cut(s)	673
FspBI	CTAG	4 cut(s)	410, 657, 762, 1169
GlaI	GCGC	2 cut(s)	671, 750
GluI	GCNGC	1 cut(s)	673
HaeII	RGCGCY	2 cut(s)	673, 752
HaeIII	GGCC	4 cut(s)	173, 356, 528, 1077
HapII	CCGG	1 cut(s)	1216
HhaI	GCGC	2 cut(s)	672, 751
Hin1II	CATG	4 cut(s)	25, 226, 773, 782
Hin6I	GCGC	2 cut(s)	670, 749
HinP1I	GCGC	2 cut(s)	670, 749
HincII	GTYRAC	2 cut(s)	704, 888
HindII	GTYRAC	2 cut(s)	704, 888
HindIII	AAGCTT	1 cut(s)	5
HpaII	CCGG	1 cut(s)	1216
HphI	GGTGA	1 cut(s)	734
Hpy166II	GTNNAC	5 cut(s)	19, 704, 767, 888, 1061
Hpy188III	TCNNGA	4 cut(s)	144, 248, 323, 642
Hpy8I	GTNNAC	5 cut(s)	19, 704, 767, 888, 1061
HpyAV	CCTTC	2 cut(s)	519, 1067
HpyCH4III	ACNGT	4 cut(s)	319, 633, 838, 1009
HpyCH4V	TGCA	7 cut(s)	61, 226, 455, 461, 483, 584, 713
HpyF10VI	GCNNNNNNNGC	4 cut(s)	419, 428, 626, 678
HpyF3I	CTNAG	3 cut(s)	263, 828, 1139
Hsp92II	CATG	4 cut(s)	25, 226, 773, 782
HspAI	GCGC	2 cut(s)	670, 749
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	199, 376, 385, 902, 1208
LmnI	GCTCC	1 cut(s)	473
Lsp1109I	GCAGC	1 cut(s)	659
LweI	GCATC	2 cut(s)	906, 1191
MaeI	CTAG	4 cut(s)	410, 657, 762, 1169
MaeIII	GTNAC	1 cut(s)	1003
MalI	GATC	5 cut(s)	201, 378, 387, 904, 1210
MboI	GATC	5 cut(s)	199, 376, 385, 902, 1208
MboII	GAAGA	2 cut(s)	731, 1037
MfeI	CAATTG	2 cut(s)	456, 585
MflI	RGATCY	1 cut(s)	902
MhlI	GDGCHC	1 cut(s)	478
MlsI	TGGCCA	1 cut(s)	356
MluCI	AATT	8 cut(s)	31, 89, 120, 456, 585, 755, 930, 988
MluNI	TGGCCA	1 cut(s)	356
MlyI	GAGTC	5 cut(s)	166, 248, 672, 1013, 1077
MmeI	TCCRAC	2 cut(s)	938, 1067
MnlI	CCTC	6 cut(s)	87, 140, 163, 250, 567, 947
Mox20I	TGGCCA	1 cut(s)	356
Mph1103I	ATGCAT	1 cut(s)	228
MroXI	GAANNNNTTC	1 cut(s)	1094
MscI	TGGCCA	1 cut(s)	356
MseI	TTAA	5 cut(s)	281, 291, 563, 1052, 1122
MslI	CAYNNNNRTG	2 cut(s)	231, 372
Msp20I	TGGCCA	1 cut(s)	356
MspI	CCGG	1 cut(s)	1216
MspR9I	CCNGG	4 cut(s)	167, 860, 1100, 1152
MunI	CAATTG	2 cut(s)	456, 585
Mva1269I	GAATGC	1 cut(s)	401
MvaI	CCWGG	4 cut(s)	167, 860, 1100, 1152
MwoI	GCNNNNNNNGC	4 cut(s)	419, 428, 626, 678
NdeII	GATC	5 cut(s)	199, 376, 385, 902, 1208
NlaIII	CATG	4 cut(s)	25, 226, 773, 782
NlaIV	GGNNCC	4 cut(s)	904, 1078, 1091, 1220
NsiI	ATGCAT	1 cut(s)	228
NspI	RCATGY	2 cut(s)	25, 773
PasI	CCCWGGG	1 cut(s)	859
PciI	ACATGT	2 cut(s)	21, 769
PctI	GAATGC	1 cut(s)	401
PdmI	GAANNNNTTC	1 cut(s)	1094
PfeI	GAWTC	5 cut(s)	251, 923, 979, 1028, 1106
PfoI	TCCNGGA	1 cut(s)	165
PinAI	ACCGGT	1 cut(s)	1215
PkrI	GCNGC	1 cut(s)	674
PleI	GAGTC	5 cut(s)	165, 247, 671, 1013, 1076
PpsI	GAGTC	5 cut(s)	165, 247, 671, 1013, 1076
PscI	ACATGT	2 cut(s)	21, 769
Psp124BI	GAGCTC	1 cut(s)	478
Psp6I	CCWGG	4 cut(s)	165, 858, 1098, 1150
PspGI	CCWGG	4 cut(s)	165, 858, 1098, 1150
PspN4I	GGNNCC	4 cut(s)	904, 1078, 1091, 1220
PspPI	GGNCC	4 cut(s)	526, 551, 893, 1076
PsuI	RGATCY	1 cut(s)	902
RseI	CAYNNNNRTG	2 cut(s)	231, 372
SacI	GAGCTC	1 cut(s)	478
SaqAI	TTAA	5 cut(s)	281, 291, 563, 1052, 1122
SatI	GCNGC	1 cut(s)	673
Sau3AI	GATC	5 cut(s)	199, 376, 385, 902, 1208
Sau96I	GGNCC	4 cut(s)	526, 551, 893, 1076
SchI	GAGTC	5 cut(s)	166, 248, 672, 1013, 1077
ScrFI	CCNGG	4 cut(s)	167, 860, 1100, 1152
SduI	GDGCHC	1 cut(s)	478
SfaNI	GCATC	2 cut(s)	906, 1191
SinI	GGWCC	2 cut(s)	551, 893
SmiMI	CAYNNNNRTG	2 cut(s)	231, 372
Sse9I	AATT	8 cut(s)	31, 89, 120, 456, 585, 755, 930, 988
SsiI	CCGC	1 cut(s)	55
SspI	AATATT	1 cut(s)	279
SspMI	CTAG	4 cut(s)	410, 657, 762, 1169
SstI	GAGCTC	1 cut(s)	478
StyD4I	CCNGG	4 cut(s)	165, 858, 1098, 1150
TaaI	ACNGT	4 cut(s)	319, 633, 838, 1009
TaqI	TCGA	4 cut(s)	322, 977, 1071, 1207
TasI	AATT	8 cut(s)	31, 89, 120, 456, 585, 755, 930, 988
TfiI	GAWTC	5 cut(s)	251, 923, 979, 1028, 1106
Tru1I	TTAA	5 cut(s)	281, 291, 563, 1052, 1122
Tru9I	TTAA	5 cut(s)	281, 291, 563, 1052, 1122
TscAI	CASTG	3 cut(s)	310, 364, 474
TseI	GCWGC	1 cut(s)	672
TspDTI	ATGAA	6 cut(s)	17, 101, 211, 531, 612, 983
TspRI	CASTG	3 cut(s)	310, 364, 474
VpaK11BI	GGWCC	2 cut(s)	551, 893
XapI	RAATTY	2 cut(s)	31, 988
XceI	RCATGY	2 cut(s)	25, 773
XmiI	GTMKAC	1 cut(s)	18
XmnI	GAANNNNTTC	1 cut(s)	1094
XspI	CTAG	4 cut(s)	410, 657, 762, 1169
Zsp2I	ATGCAT	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.