Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Reverse (-)

79287407 .. 79289611

Gene Structure 2205 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ34812

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGAGTCCATACAAGGTTTCACGAAATCGACCCAAGAGTTTTTCGACAACCTCATCCACCGCCGTGCAAATTGCCGGAATCCGATTGAAATACTGAAGCGATTGCAAAGAGAGACGTTTTCAGATTTGATGAGACTGAGGGACAGGCAAGACCAAGTTGAGAGAATGGTGTCCTTGTTTGGGCCTTCTAAAGGAAGCCCATTTCAAGGAGGCAACACCCCTTTAAAGGTAGAAGCTGATTTCTTGGGGGGTTTGTTATGGAAGCATAATAATAATGATGATGATGATGATGGGGGTCATCAATACCCTGATGCTCTTAGTAGAGCTGGGATTAGAACTGGGTTTGATTCTAGGTTGAGTATTGAAATATCTCCCTCACCGCATGATGCTCTTTTGACTGAGTTTGTGGCCGGTCAGAAGTACAGGAATGATGGTTTTGATGTTTCAGAATGTCAGGTTTCTCTAGCTAAAGTGTCTTATATGGCAAATGTGAGCAATTGGTTGTCCGCCATTGCAATTCCAGTGGGAGCTCGGTGCAGGGACTTCGCGGTTGTTACGAGTCCTTCCCATCAGGTGGGAAAGGGCCTAACTGATCGATCATCATTCGGACCACCTCTTCTAAATGAGTATAATGGCAGTGCAATTGGCATAATGGTGAAAAATGCAAATGTGGTTGTTGCTTCATTGGCTCAGTCTGTTTCGGGACTGGGAGTGCCAGTACGTTCTGGTAGAGTTGGGCACTGCTTGAGCACTTTTGGTCAAATTGTCTGCCAACTTCCCGGAAACACCAAACTCTCGCTTCTTGGTCTTCACCAAATGCCTAAATCGTCAGGTGAACATGTCAATCACGGAGCTCTTTCCGTCCCATCAGGCAGTTTAGAACACCATACGTCTCCTCCAACAATGGCTGAAGCATCTGCTCCACCCCCAAGAACAAACTCACAAGGAAACACGTCAGCAACTGGATCCATTGCTGTGATGTTCGAATCTGAAATTGACGAGACCACAAAGATTGGGAGTTGGGTTGAGATGAAGAAATTGAATCCCAGGCATTTAGAATGGGCCGTTTCTGTGTCCGATGACTCTAAAGATTCAGTTGGATGGGGAATAAGTTTAAATGGGATGGTTGGGGGTCCCAATAGCTGTGACCATTTTCAGATGGAATCCTACTTGAAATTTAACTTAAGTGAGAGATTCAGTGTAAAGCCTGGTATTGTACATATAATCGATGGCAATGCCAAAATGACTGCCCTTATGCTTAGGTCTAATTGGTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

426

Amino Acids

46.28

Weight (kDa)

6.54

Isoelectric Point (pI)

40.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	574
AccII	CGCG	1 cut(s)	548
AciI	CCGC	4 cut(s)	61, 380, 507, 548
AclWI	GGATC	2 cut(s)	960, 973
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	1175
AcuI	CTGAAG	2 cut(s)	116, 930
AfaI	GTAC	3 cut(s)	422, 720, 1218
AfiI	CCNNNNNNNGG	5 cut(s)	180, 191, 206, 226, 574
AflII	CTTAAG	1 cut(s)	1183
AflIII	ACRYGT	2 cut(s)	838, 951
AgsI	TTSAA	5 cut(s)	89, 206, 365, 1042, 1174
AjiI	CACGTC	1 cut(s)	954
AjnI	CCWGG	2 cut(s)	1046, 1207
AleI	CACNNNNGTG	1 cut(s)	63
AluBI	AGCT	6 cut(s)	236, 326, 467, 530, 854, 1143
AluI	AGCT	6 cut(s)	236, 326, 467, 530, 854, 1143
Alw21I	GWGCWC	3 cut(s)	532, 752, 856
Alw26I	GTCTC	4 cut(s)	107, 127, 897, 995
AlwI	GGATC	2 cut(s)	960, 973
AlwNI	CAGNNNCTG	1 cut(s)	962
AoxI	GGCC	4 cut(s)	182, 408, 583, 1062
ApoI	RAATTY	1 cut(s)	1175
AspS9I	GGNCC	5 cut(s)	182, 583, 608, 1062, 1133
AsuC2I	CCSGG	1 cut(s)	780
AsuHPI	GGTGA	4 cut(s)	369, 667, 803, 845
AsuII	TTCGAA	1 cut(s)	984
AvaII	GGWCC	2 cut(s)	608, 1133
BaeGI	GKGCMC	1 cut(s)	741
BamHI	GGATCC	1 cut(s)	965
BanII	GRGCYC	2 cut(s)	532, 856
BbsI	GAAGAC	1 cut(s)	800
Bbv12I	GWGCWC	3 cut(s)	532, 752, 856
BccI	CCATC	8 cut(s)	284, 425, 576, 874, 1095, 1117, 1153, 1223
BceAI	ACGGC	2 cut(s)	48, 1049
BcgI	CGANNNNNNTGC	4 cut(s)	526, 560, 1217, 1251
BciT130I	CCWGG	2 cut(s)	1048, 1209
BcnI	CCSGG	1 cut(s)	780
BcoDI	GTCTC	4 cut(s)	107, 127, 897, 995
BfaI	CTAG	2 cut(s)	351, 464
BfrI	CTTAAG	1 cut(s)	1183
Bme1390I	CCNGG	3 cut(s)	780, 1048, 1209
Bme18I	GGWCC	2 cut(s)	608, 1133
BmgBI	CACGTC	1 cut(s)	954
BmgT120I	GGNCC	5 cut(s)	182, 583, 608, 1062, 1133
BmiI	GGNNCC	3 cut(s)	967, 1134, 1135
BmrFI	CCNGG	3 cut(s)	780, 1048, 1209
BmrI	ACTGGG	2 cut(s)	348, 716
BmsI	GCATC	3 cut(s)	301, 376, 923
BmuI	ACTGGG	2 cut(s)	348, 716
BpiI	GAAGAC	1 cut(s)	800
Bpu10I	CCTNAGC	1 cut(s)	1259
Bpu14I	TTCGAA	1 cut(s)	984
BpuEI	CTTGAG	1 cut(s)	766
BpuMI	CCSGG	1 cut(s)	780
Bsa29I	ATCGAT	2 cut(s)	595, 1227
BsaI	GGTCTC	1 cut(s)	995
BsaJI	CCNNGG	1 cut(s)	1046
BsaXI	ACNNNNNCTCC	4 cut(s)	702, 732, 880, 910
Bsc4I	CCNNNNNNNGG	5 cut(s)	180, 191, 206, 226, 574
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	5 cut(s)	343, 521, 711, 716, 967
Bse3DI	GCAATG	3 cut(s)	510, 969, 1240
BseBI	CCWGG	2 cut(s)	1048, 1209
BseCI	ATCGAT	2 cut(s)	595, 1227
BseDI	CCNNGG	1 cut(s)	1046
BseGI	GGATG	3 cut(s)	54, 1106, 1128
BseLI	CCNNNNNNNGG	5 cut(s)	180, 191, 206, 226, 574
BseMI	GCAATG	3 cut(s)	510, 969, 1240
BseMII	CTCAG	3 cut(s)	128, 390, 704
BseNI	ACTGG	5 cut(s)	343, 521, 711, 716, 967
BseRI	GAGGAG	1 cut(s)	885
BseSI	GKGCMC	1 cut(s)	741
BseYI	CCCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	556
Bsh1236I	CGCG	1 cut(s)	548
BshFI	GGCC	4 cut(s)	184, 410, 585, 1064
BshVI	ATCGAT	2 cut(s)	595, 1227
BsiHKAI	GWGCWC	3 cut(s)	532, 752, 856
BsiSI	CCGG	3 cut(s)	76, 411, 780
BslFI	GGGAC	5 cut(s)	155, 554, 717, 848, 1119
BslI	CCNNNNNNNGG	5 cut(s)	180, 191, 206, 226, 574
BsmAI	GTCTC	4 cut(s)	107, 127, 897, 995
BsmBI	CGTCTC	2 cut(s)	107, 897
BsmFI	GGGAC	5 cut(s)	155, 554, 717, 848, 1119
BsnI	GGCC	4 cut(s)	184, 410, 585, 1064
Bso31I	GGTCTC	1 cut(s)	995
Bsp119I	TTCGAA	1 cut(s)	984
Bsp1286I	GDGCHC	4 cut(s)	532, 741, 752, 856
Bsp1407I	TGTACA	1 cut(s)	1216
Bsp143I	GATC	3 cut(s)	592, 596, 965
BspACI	CCGC	4 cut(s)	61, 380, 507, 548
BspANI	GGCC	4 cut(s)	184, 410, 585, 1064
BspCNI	CTCAG	3 cut(s)	129, 391, 703
BspDI	ATCGAT	2 cut(s)	595, 1227
BspFNI	CGCG	1 cut(s)	548
BspLI	GGNNCC	3 cut(s)	967, 1134, 1135
BspPI	GGATC	2 cut(s)	960, 973
BspT104I	TTCGAA	1 cut(s)	984
BspTI	CTTAAG	1 cut(s)	1183
BspTNI	GGTCTC	1 cut(s)	995
BsrDI	GCAATG	3 cut(s)	510, 969, 1240
BsrFI	RCCGGY	1 cut(s)	410
BsrGI	TGTACA	1 cut(s)	1216
BsrI	ACTGG	5 cut(s)	343, 521, 711, 716, 967
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	1 cut(s)	1046
BssMI	GATC	3 cut(s)	592, 596, 965
Bst2UI	CCWGG	2 cut(s)	1048, 1209
Bst6I	CTCTTC	1 cut(s)	621
BstAFI	CTTAAG	1 cut(s)	1183
BstAUI	TGTACA	1 cut(s)	1216
BstBI	TTCGAA	1 cut(s)	984
BstDEI	CTNAG	5 cut(s)	137, 317, 399, 690, 1259
BstENI	CCTNNNNNAGG	1 cut(s)	189
BstF5I	GGATG	3 cut(s)	54, 1106, 1128
BstFNI	CGCG	1 cut(s)	548
BstKTI	GATC	3 cut(s)	595, 599, 968
BstMAI	GTCTC	4 cut(s)	107, 127, 897, 995
BstMBI	GATC	3 cut(s)	592, 596, 965
BstMWI	GCNNNNNNNGC	1 cut(s)	686
BstNI	CCWGG	2 cut(s)	1048, 1209
BstNSI	RCATGY	1 cut(s)	842
BstSCI	CCNGG	3 cut(s)	778, 1046, 1207
BstSLI	GKGCMC	1 cut(s)	741
BstUI	CGCG	1 cut(s)	548
BstV2I	GAAGAC	1 cut(s)	800
BstX2I	RGATCY	1 cut(s)	965
BstYI	RGATCY	1 cut(s)	965
Bsu15I	ATCGAT	2 cut(s)	595, 1227
BsuRI	GGCC	4 cut(s)	184, 410, 585, 1064
BsuTUI	ATCGAT	2 cut(s)	595, 1227
BtrI	CACGTC	1 cut(s)	954
BtsCI	GGATG	3 cut(s)	54, 1106, 1128
BtsI	GCAGTG	2 cut(s)	643, 739
BtsIMutI	CAGTG	4 cut(s)	528, 643, 739, 1204
CaiI	CAGNNNCTG	1 cut(s)	962
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	5 cut(s)	182, 583, 608, 1062, 1133
ClaI	ATCGAT	2 cut(s)	595, 1227
Csp6I	GTAC	3 cut(s)	421, 719, 1217
CspCI	CAANNNNNGTGG	4 cut(s)	504, 539, 994, 1029
CviAII	CATG	2 cut(s)	383, 839
CviQI	GTAC	3 cut(s)	421, 719, 1217
DdeI	CTNAG	5 cut(s)	137, 317, 399, 690, 1259
DpnI	GATC	3 cut(s)	594, 598, 967
DpnII	GATC	3 cut(s)	592, 596, 965
DraI	TTTAAA	2 cut(s)	225, 1116
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	621
EarI	CTCTTC	1 cut(s)	621
EciI	GGCGGA	1 cut(s)	496
Ecl136II	GAGCTC	2 cut(s)	530, 854
Eco24I	GRGCYC	2 cut(s)	532, 856
Eco31I	GGTCTC	1 cut(s)	995
Eco47I	GGWCC	2 cut(s)	608, 1133
Eco53kI	GAGCTC	2 cut(s)	530, 854
Eco57I	CTGAAG	2 cut(s)	116, 930
EcoICRI	GAGCTC	2 cut(s)	530, 854
EcoNI	CCTNNNNNAGG	1 cut(s)	189
EcoO109I	RGGNCCY	2 cut(s)	583, 1133
EcoRII	CCWGG	2 cut(s)	1046, 1207
EcoT38I	GRGCYC	2 cut(s)	532, 856
Esp3I	CGTCTC	2 cut(s)	107, 897
FaeI	CATG	2 cut(s)	386, 842
FaqI	GGGAC	5 cut(s)	155, 554, 717, 848, 1119
FatI	CATG	2 cut(s)	382, 838
FokI	GGATG	3 cut(s)	41, 1113, 1135
FriOI	GRGCYC	2 cut(s)	532, 856
FspBI	CTAG	2 cut(s)	351, 464
GsaI	CCCAGC	1 cut(s)	330
HaeIII	GGCC	4 cut(s)	184, 410, 585, 1064
HapII	CCGG	3 cut(s)	76, 411, 780
Hin1II	CATG	2 cut(s)	386, 842
HpaII	CCGG	3 cut(s)	76, 411, 780
HphI	GGTGA	4 cut(s)	369, 667, 803, 845
Hpy166II	GTNNAC	1 cut(s)	836
Hpy188I	TCNGA	9 cut(s)	84, 124, 417, 448, 608, 991, 1078, 1158, 1280
Hpy188III	TCNNGA	2 cut(s)	22, 702
Hpy8I	GTNNAC	1 cut(s)	836
HpyAV	CCTTC	2 cut(s)	195, 573
HpyCH4IV	ACGT	4 cut(s)	116, 721, 890, 953
HpyCH4V	TGCA	6 cut(s)	68, 106, 515, 537, 641, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	686
HpyF3I	CTNAG	5 cut(s)	137, 317, 399, 690, 1259
HpySE526I	ACGT	4 cut(s)	116, 721, 890, 953
Hsp92II	CATG	2 cut(s)	386, 842
KflI	GGGWCCC	1 cut(s)	1133
Kzo9I	GATC	3 cut(s)	592, 596, 965
LmnI	GCTCC	3 cut(s)	527, 851, 925
LweI	GCATC	3 cut(s)	301, 376, 923
MaeI	CTAG	2 cut(s)	351, 464
MaeII	ACGT	4 cut(s)	116, 721, 890, 953
MaeIII	GTNAC	2 cut(s)	553, 1145
MalI	GATC	3 cut(s)	594, 598, 967
MboI	GATC	3 cut(s)	592, 596, 965
MboII	GAAGA	3 cut(s)	608, 800, 1045
MfeI	CAATTG	2 cut(s)	496, 642
MflI	RGATCY	1 cut(s)	965
MhlI	GDGCHC	4 cut(s)	532, 741, 752, 856
MluCI	AATT	9 cut(s)	70, 496, 516, 642, 762, 993, 1037, 1175, 1267
MlyI	GAGTC	3 cut(s)	14, 568, 1076
MmeI	TCCRAC	2 cut(s)	923, 1078
MnlI	CCTC	6 cut(s)	62, 132, 203, 385, 624, 906
MseI	TTAA	4 cut(s)	224, 1115, 1179, 1184
MslI	CAYNNNNRTG	3 cut(s)	63, 653, 974
MspCI	CTTAAG	1 cut(s)	1183
MspI	CCGG	3 cut(s)	76, 411, 780
MspR9I	CCNGG	3 cut(s)	780, 1048, 1209
MunI	CAATTG	2 cut(s)	496, 642
MvaI	CCWGG	2 cut(s)	1048, 1209
MvnI	CGCG	1 cut(s)	548
MwoI	GCNNNNNNNGC	1 cut(s)	686
NciI	CCSGG	1 cut(s)	780
NdeII	GATC	3 cut(s)	592, 596, 965
NlaIII	CATG	2 cut(s)	386, 842
NlaIV	GGNNCC	3 cut(s)	967, 1134, 1135
NmuCI	GTSAC	1 cut(s)	1145
NspI	RCATGY	1 cut(s)	842
NspV	TTCGAA	1 cut(s)	984
OliI	CACNNNNGTG	1 cut(s)	63
PciI	ACATGT	1 cut(s)	838
PfeI	GAWTC	7 cut(s)	79, 347, 986, 1042, 1091, 1163, 1194
PflMI	CCANNNNNTGG	1 cut(s)	574
PfoI	TCCNGGA	1 cut(s)	778
PleI	GAGTC	3 cut(s)	13, 567, 1076
PpsI	GAGTC	3 cut(s)	13, 567, 1076
PpuMI	RGGWCCY	1 cut(s)	1133
PscI	ACATGT	1 cut(s)	838
Psp124BI	GAGCTC	2 cut(s)	532, 856
Psp5II	RGGWCCY	1 cut(s)	1133
Psp6I	CCWGG	2 cut(s)	1046, 1207
PspFI	CCCAGC	1 cut(s)	326
PspGI	CCWGG	2 cut(s)	1046, 1207
PspN4I	GGNNCC	3 cut(s)	967, 1134, 1135
PspPI	GGNCC	5 cut(s)	182, 583, 608, 1062, 1133
PspPPI	RGGWCCY	1 cut(s)	1133
PstNI	CAGNNNCTG	1 cut(s)	962
PsuI	RGATCY	1 cut(s)	965
RsaI	GTAC	3 cut(s)	422, 720, 1218
RsaNI	GTAC	3 cut(s)	421, 719, 1217
RseI	CAYNNNNRTG	3 cut(s)	63, 653, 974
SacI	GAGCTC	2 cut(s)	532, 856
SaqAI	TTAA	4 cut(s)	224, 1115, 1179, 1184
Sau3AI	GATC	3 cut(s)	592, 596, 965
Sau96I	GGNCC	5 cut(s)	182, 583, 608, 1062, 1133
SchI	GAGTC	3 cut(s)	14, 568, 1076
ScrFI	CCNGG	3 cut(s)	780, 1048, 1209
SduI	GDGCHC	4 cut(s)	532, 741, 752, 856
SfaNI	GCATC	3 cut(s)	301, 376, 923
SfuI	TTCGAA	1 cut(s)	984
SinI	GGWCC	2 cut(s)	608, 1133
SmiMI	CAYNNNNRTG	3 cut(s)	63, 653, 974
SmlI	CTYRAG	2 cut(s)	745, 1183
SmoI	CTYRAG	2 cut(s)	745, 1183
Sse9I	AATT	9 cut(s)	70, 496, 516, 642, 762, 993, 1037, 1175, 1267
SsiI	CCGC	4 cut(s)	61, 380, 507, 548
SspMI	CTAG	2 cut(s)	351, 464
SstI	GAGCTC	2 cut(s)	532, 856
StyD4I	CCNGG	3 cut(s)	778, 1046, 1207
TaiI	ACGT	4 cut(s)	119, 724, 893, 956
TaqI	TCGA	5 cut(s)	29, 45, 595, 984, 1227
TasI	AATT	9 cut(s)	70, 496, 516, 642, 762, 993, 1037, 1175, 1267
TatI	WGTACW	2 cut(s)	420, 1216
TfiI	GAWTC	7 cut(s)	79, 347, 986, 1042, 1091, 1163, 1194
Tru1I	TTAA	4 cut(s)	224, 1115, 1179, 1184
Tru9I	TTAA	4 cut(s)	224, 1115, 1179, 1184
TscAI	CASTG	4 cut(s)	528, 643, 746, 1204
TseFI	GTSAC	1 cut(s)	1145
Tsp45I	GTSAC	1 cut(s)	1145
TspDTI	ATGAA	2 cut(s)	672, 1046
TspGWI	ACGGA	2 cut(s)	850, 864
TspRI	CASTG	4 cut(s)	528, 643, 746, 1204
Van91I	CCANNNNNTGG	1 cut(s)	574
Vha464I	CTTAAG	1 cut(s)	1183
VpaK11BI	GGWCC	2 cut(s)	608, 1133
XagI	CCTNNNNNAGG	1 cut(s)	189
XapI	RAATTY	1 cut(s)	1175
XceI	RCATGY	1 cut(s)	842
XspI	CTAG	2 cut(s)	351, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.