MD08G1009600.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
Physical Location & Seq
Reverse (-)
703876 .. 706457
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1009600.v1.1.491

Sequence Viewer

Length: 1329 bp
ATGGAAACCGTAGATTTTGTTGCAGACAAGATACGAGGTTTCACGAAATCGACCCAGGAGATGTTCGACAGCCTCGTTCATGGACGCCCTCGGCCTTCAGCTCGTCGACATCCGATTGAAATATTGAAGCGGTTGCAACGAGAAGCGTTTTCGGATTTGATGAGACTGAGGGATAGACAAGATAAGGTTGAGAGAATGGTTTCCTTGTATGGAACATCCAGGGGAAGTCCATTCCAAGAAGCCAGCACCCTTGTAAGGGGAGAGGTTGATCTCTTGGGGGCTTTCTTATTCGTGCTTAATAGTGAGGATGAGGCTGATCACAGCTCTGATGCTCTTACTCGAGCCGGAATGAGAACTGGGGTCGATTCAAAGTTTGCTTTTGAAACTACTGTTCGGGAGAATGATACGCTTGTTGCAGAATTTGTGGCCGGTCAAAAGCACAAGAGTAGTCTTTCTAATCTTTCAGAATGCCCACTTTCTCTAGCAAAAGTTTCCTATACGGCAAATGTTAGCAACTGGTTATCTGCGATTGCAATCCCAGTGGGAGCTCGGTGCAGGGATGTTGCGGTTCTTACTAGTCCATCTCACCAGGGGAAGGGCCTTACTGATCTTTCATCATTTGGGCCACCTCTTCTAAATCAACACAATGGCAGTGCAATTGGTTTAATGGTGAAAAAATCAAATGTTGTTGCTTCATTGGCTCAGTTTGTTTCCGGACTGGCAACACAAGCAGGTTCAGGTAGAGTTGGGCGCTGCTTGAGCACTTTTGGGCAAATTGTCTATCAACTTCCCGGAGGAACAAAGCTCTCGCTTCTAGGTCTGCACCAAATACCTAAGTTATCTAGTGAACGTGGGGAGCATAGAATTGGAGTTCTTACGATTCCTTTAAGCAGTTTGGTGCGTCGCAAGCCCCCTGAGACAACAGTTGAGGGCAGTTTGACACAGCACACCTCCCCCGAGACAATGGTTGAAGCCTTTGCTCCACCCCTAGGAACAAACTCTGGGTCAACTGGATCTGTTGCTCTGATGTTGGAATCAGAAATTGATGAGTTCACAAAGCTTGGGGGTTGGATTGAGATGAAGCAGTCGAATCCCAAGCATTTAGAATGGGCTGTGACCGTTGCTGATGATTCGGAAGATTCAGTTGGATGGGGAATAGGTTTAAATGGGATACTTGCAGGTCCAAACTTATGGGACCGTTTTCAGGCTGAATCGTACTTCAAGTTTAACTTGGGTAAGAGGTTCAGTGTAAAGCCAGGGGTTGCATATATAAGGGATGGGAATGCGAAAATGACCGCCTTTATGCTGCGGTCAAACTGGTCTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

443

Amino Acids

48.13

Weight (kDa)

8.65

Isoelectric Point (pI)

32.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 722, 1169
AccI GTMKAC 1 cut(s) 106
AccIII TCCGGA 1 cut(s) 713
AciI CCGC 4 cut(s) 130, 566, 1296, 1309
AclWI GGATC 1 cut(s) 1021
AcoI YGGCCR 1 cut(s) 426
AcsI RAATTY 1 cut(s) 419
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 85
AfaI GTAC 1 cut(s) 1217
AfiI CCNNNNNNNGG 5 cut(s) 255, 256, 595, 989, 1204
AgsI TTSAA 6 cut(s) 119, 127, 369, 383, 971, 1222
AhlI ACTAGT 1 cut(s) 575
AjnI CCWGG 4 cut(s) 54, 218, 588, 1255
AjuI GAANNNNNNNTTGG 2 cut(s) 1128, 1160
AluBI AGCT 5 cut(s) 101, 324, 548, 805, 1060
AluI AGCT 5 cut(s) 101, 324, 548, 805, 1060
Alw21I GWGCWC 2 cut(s) 550, 764
Alw26I GTCTC 3 cut(s) 157, 911, 953
AlwI GGATC 1 cut(s) 1021
Ama87I CYCGRG 2 cut(s) 339, 956
Aor13HI TCCGGA 1 cut(s) 713
AoxI GGCC 4 cut(s) 92, 426, 598, 623
ApeKI GCWGC 2 cut(s) 753, 1306
ApoI RAATTY 1 cut(s) 419
ArsI GACNNNNNNTTYG 2 cut(s) 989, 1021
Asp700I GAANNNNTTC 1 cut(s) 199
AspA2I CCTAGG 1 cut(s) 988
AspLEI GCGC 1 cut(s) 753
AspS9I GGNCC 4 cut(s) 598, 623, 1181, 1195
AsuC2I CCSGG 1 cut(s) 792
AsuHPI GGTGA 2 cut(s) 578, 682
AvaI CYCGRG 2 cut(s) 339, 956
AvaII GGWCC 2 cut(s) 1181, 1195
AvrII CCTAGG 1 cut(s) 988
BaeI ACNNNNGTAYC 2 cut(s) 396, 429
BanII GRGCYC 1 cut(s) 550
Bbv12I GWGCWC 2 cut(s) 550, 764
BbvI GCAGC 2 cut(s) 740, 1293
BccI CCATC 3 cut(s) 589, 1143, 1271
BceAI ACGGC 1 cut(s) 516
BciT130I CCWGG 4 cut(s) 56, 220, 590, 1257
BciVI GTATCC 1 cut(s) 1164
BclI TGATCA 1 cut(s) 316
BcnI CCSGG 1 cut(s) 792
BcoDI GTCTC 3 cut(s) 157, 911, 953
BcuI ACTAGT 1 cut(s) 575
BfaI CTAG 5 cut(s) 482, 576, 815, 843, 989
BfoI RGCGCY 1 cut(s) 754
BfuAI ACCTGC 2 cut(s) 722, 1169
BfuI GTATCC 1 cut(s) 1164
BisI GCNGC 2 cut(s) 754, 1307
BlnI CCTAGG 1 cut(s) 988
BlsI GCNGC 2 cut(s) 755, 1308
Bme1390I CCNGG 5 cut(s) 56, 220, 590, 792, 1257
Bme18I GGWCC 2 cut(s) 1181, 1195
BmeT110I CYCGRG 2 cut(s) 339, 956
BmgT120I GGNCC 4 cut(s) 598, 623, 1181, 1195
BmiI GGNNCC 1 cut(s) 1196
BmrFI CCNGG 5 cut(s) 56, 220, 590, 792, 1257
BmrI ACTGGG 2 cut(s) 366, 533
BmsI GCATC 1 cut(s) 319
BmuI ACTGGG 2 cut(s) 366, 533
BpuEI CTTGAG 1 cut(s) 778
BpuMI CCSGG 1 cut(s) 792
BsaBI GATNNNNATC 1 cut(s) 533
BsaHI GRCGYC 1 cut(s) 85
BsaJI CCNNGG 6 cut(s) 54, 89, 219, 589, 988, 1256
BsaWI WCCGGW 1 cut(s) 713
Bsc4I CCNNNNNNNGG 5 cut(s) 255, 256, 595, 989, 1204
Bse118I RCCGGY 1 cut(s) 428
Bse1I ACTGG 6 cut(s) 361, 521, 539, 723, 1015, 1322
Bse8I GATNNNNATC 1 cut(s) 533
BseAI TCCGGA 1 cut(s) 713
BseBI CCWGG 4 cut(s) 56, 220, 590, 1257
BseDI CCNNGG 6 cut(s) 54, 89, 219, 589, 988, 1256
BseGI GGATG 6 cut(s) 109, 215, 313, 565, 1154, 1282
BseJI GATNNNNATC 1 cut(s) 533
BseLI CCNNNNNNNGG 5 cut(s) 255, 256, 595, 989, 1204
BseMII CTCAG 3 cut(s) 158, 716, 906
BseNI ACTGG 6 cut(s) 361, 521, 539, 723, 1015, 1322
BseXI GCAGC 2 cut(s) 740, 1293
BsgI GTGCAG 2 cut(s) 574, 806
BshFI GGCC 4 cut(s) 94, 428, 600, 625
BsiHKAI GWGCWC 2 cut(s) 550, 764
BsiHKCI CYCGRG 2 cut(s) 339, 956
BsiSI CCGG 4 cut(s) 345, 429, 714, 792
BslFI GGGAC 1 cut(s) 1208
BslI CCNNNNNNNGG 5 cut(s) 255, 256, 595, 989, 1204
BsmAI GTCTC 3 cut(s) 157, 911, 953
BsmFI GGGAC 1 cut(s) 1208
BsmI GAATGC 2 cut(s) 473, 1288
BsnI GGCC 4 cut(s) 94, 428, 600, 625
BsoBI CYCGRG 2 cut(s) 339, 956
Bsp1286I GDGCHC 2 cut(s) 550, 764
Bsp13I TCCGGA 1 cut(s) 713
Bsp143I GATC 4 cut(s) 268, 316, 607, 1013
BspACI CCGC 4 cut(s) 130, 566, 1296, 1309
BspANI GGCC 4 cut(s) 94, 428, 600, 625
BspCNI CTCAG 3 cut(s) 159, 715, 907
BspEI TCCGGA 1 cut(s) 713
BspLI GGNNCC 1 cut(s) 1196
BspMI ACCTGC 2 cut(s) 722, 1169
BspPI GGATC 1 cut(s) 1021
BsrFI RCCGGY 1 cut(s) 428
BsrI ACTGG 6 cut(s) 361, 521, 539, 723, 1015, 1322
BssAI RCCGGY 1 cut(s) 428
BssECI CCNNGG 6 cut(s) 54, 89, 219, 589, 988, 1256
BssMI GATC 4 cut(s) 268, 316, 607, 1013
BssNI GRCGYC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 988
Bst2UI CCWGG 4 cut(s) 56, 220, 590, 1257
Bst4CI ACNGT 5 cut(s) 10, 391, 925, 1120, 1199
Bst6I CTCTTC 1 cut(s) 636
BstACI GRCGYC 1 cut(s) 85
BstC8I GCNNGC 2 cut(s) 244, 908
BstDEI CTNAG 4 cut(s) 167, 702, 834, 915
BstF5I GGATG 6 cut(s) 109, 215, 313, 565, 1154, 1282
BstH2I RGCGCY 1 cut(s) 754
BstHHI GCGC 1 cut(s) 753
BstKTI GATC 4 cut(s) 271, 319, 610, 1016
BstMAI GTCTC 3 cut(s) 157, 911, 953
BstMBI GATC 4 cut(s) 268, 316, 607, 1013
BstMWI GCNNNNNNNGC 4 cut(s) 698, 728, 759, 907
BstNI CCWGG 4 cut(s) 56, 220, 590, 1257
BstSCI CCNGG 5 cut(s) 54, 218, 588, 790, 1255
BstV1I GCAGC 2 cut(s) 740, 1293
BstX2I RGATCY 1 cut(s) 1013
BstXI CCANNNNNNTGG 1 cut(s) 1191
BstYI RGATCY 1 cut(s) 1013
BsuI GTATCC 1 cut(s) 1164
BsuRI GGCC 4 cut(s) 94, 428, 600, 625
BtsCI GGATG 6 cut(s) 109, 215, 313, 565, 1154, 1282
BtsI GCAGTG 1 cut(s) 658
BtsIMutI CAGTG 3 cut(s) 546, 658, 1252
BveI ACCTGC 2 cut(s) 722, 1169
Cac8I GCNNGC 2 cut(s) 244, 908
CfoI GCGC 1 cut(s) 753
Cfr10I RCCGGY 1 cut(s) 428
Cfr13I GGNCC 4 cut(s) 598, 623, 1181, 1195
CseI GACGC 2 cut(s) 93, 890
Csp6I GTAC 1 cut(s) 1216
CspCI CAANNNNNGTGG 2 cut(s) 522, 557
CviAII CATG 1 cut(s) 80
CviQI GTAC 1 cut(s) 1216
DdeI CTNAG 4 cut(s) 167, 702, 834, 915
DpnI GATC 4 cut(s) 270, 318, 609, 1015
DpnII GATC 4 cut(s) 268, 316, 607, 1013
DraI TTTAAA 1 cut(s) 1164
EaeI YGGCCR 1 cut(s) 426
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Ecl136II GAGCTC 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 988
Eco24I GRGCYC 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 1181, 1195
Eco53kI GAGCTC 1 cut(s) 548
Eco57I CTGAAG 1 cut(s) 81
Eco88I CYCGRG 2 cut(s) 339, 956
EcoICRI GAGCTC 1 cut(s) 548
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 4 cut(s) 54, 218, 588, 1255
EcoT14I CCWWGG 1 cut(s) 988
EcoT38I GRGCYC 1 cut(s) 550
ErhI CCWWGG 1 cut(s) 988
FaeI CATG 1 cut(s) 83
FaiI YATR 9 cut(s) 81, 210, 498, 861, 1192, 1267, 1269, 1271, 1304
FalI AAGNNNNNCTT 2 cut(s) 1214, 1246
FaqI GGGAC 1 cut(s) 1208
FatI CATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 316
FblI GTMKAC 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 754, 1307
FokI GGATG 6 cut(s) 96, 202, 320, 572, 1161, 1289
FriOI GRGCYC 1 cut(s) 550
Fsp4HI GCNGC 2 cut(s) 754, 1307
FspBI CTAG 5 cut(s) 482, 576, 815, 843, 989
GlaI GCGC 1 cut(s) 752
GluI GCNGC 2 cut(s) 754, 1307
HaeII RGCGCY 1 cut(s) 754
HaeIII GGCC 4 cut(s) 94, 428, 600, 625
HapII CCGG 4 cut(s) 345, 429, 714, 792
HgaI GACGC 2 cut(s) 93, 890
HhaI GCGC 1 cut(s) 753
Hin1I GRCGYC 1 cut(s) 85
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 1 cut(s) 751
HinP1I GCGC 1 cut(s) 751
HincII GTYRAC 2 cut(s) 107, 1008
HindII GTYRAC 2 cut(s) 107, 1008
HindIII AAGCTT 1 cut(s) 1058
HinfI GANTC 7 cut(s) 365, 880, 1034, 1090, 1130, 1139, 1211
HpaII CCGG 4 cut(s) 345, 429, 714, 792
HphI GGTGA 2 cut(s) 578, 682
Hpy166II GTNNAC 4 cut(s) 107, 848, 1008, 1053
Hpy188I TCNGA 7 cut(s) 114, 154, 328, 466, 1026, 1039, 1135
Hpy188III TCNNGA 3 cut(s) 43, 395, 714
Hpy8I GTNNAC 4 cut(s) 107, 848, 1008, 1053
Hpy99I CGWCG 2 cut(s) 108, 906
HpyAV CCTTC 2 cut(s) 105, 589
HpyCH4III ACNGT 5 cut(s) 10, 391, 925, 1120, 1199
HpyCH4IV ACGT 1 cut(s) 850
HpyCH4V TGCA 9 cut(s) 23, 136, 416, 533, 555, 656, 823, 1178, 1265
HpyF10VI GCNNNNNNNGC 4 cut(s) 698, 728, 759, 907
HpyF3I CTNAG 4 cut(s) 167, 702, 834, 915
HpySE526I ACGT 1 cut(s) 850
Hsp92I GRCGYC 1 cut(s) 85
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 1 cut(s) 751
Kpn2I TCCGGA 1 cut(s) 713
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 4 cut(s) 268, 316, 607, 1013
LmnI GCTCC 3 cut(s) 545, 856, 985
Lsp1109I GCAGC 2 cut(s) 740, 1293
LweI GCATC 1 cut(s) 319
MaeI CTAG 5 cut(s) 482, 576, 815, 843, 989
MaeII ACGT 1 cut(s) 850
MaeIII GTNAC 1 cut(s) 1114
MalI GATC 4 cut(s) 270, 318, 609, 1015
MboI GATC 4 cut(s) 268, 316, 607, 1013
MboII GAAGA 2 cut(s) 623, 1148
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 1 cut(s) 1013
MhlI GDGCHC 2 cut(s) 550, 764
MluCI AATT 5 cut(s) 419, 657, 774, 864, 1041
MmeI TCCRAC 3 cut(s) 1011, 1049, 1126
MroI TCCGGA 1 cut(s) 713
MroXI GAANNNNTTC 1 cut(s) 199
MseI TTAA 5 cut(s) 297, 665, 887, 1163, 1227
MspI CCGG 4 cut(s) 345, 429, 714, 792
MspR9I CCNGG 5 cut(s) 56, 220, 590, 792, 1257
MunI CAATTG 1 cut(s) 657
Mva1269I GAATGC 2 cut(s) 473, 1288
MvaI CCWGG 4 cut(s) 56, 220, 590, 1257
MwoI GCNNNNNNNGC 4 cut(s) 698, 728, 759, 907
NciI CCSGG 1 cut(s) 792
NdeII GATC 4 cut(s) 268, 316, 607, 1013
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 1196
NmeAIII GCCGAG 1 cut(s) 70
NmuCI GTSAC 1 cut(s) 1114
PaeR7I CTCGAG 1 cut(s) 339
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 2 cut(s) 473, 1288
PdmI GAANNNNTTC 1 cut(s) 199
PfeI GAWTC 7 cut(s) 365, 880, 1034, 1090, 1130, 1139, 1211
PfoI TCCNGGA 1 cut(s) 790
PkrI GCNGC 2 cut(s) 755, 1308
Psp124BI GAGCTC 1 cut(s) 550
Psp6I CCWGG 4 cut(s) 54, 218, 588, 1255
PspGI CCWGG 4 cut(s) 54, 218, 588, 1255
PspN4I GGNNCC 1 cut(s) 1196
PspPI GGNCC 4 cut(s) 598, 623, 1181, 1195
PspXI VCTCGAGB 1 cut(s) 339
PsuI RGATCY 1 cut(s) 1013
RsaI GTAC 1 cut(s) 1217
RsaNI GTAC 1 cut(s) 1216
SacI GAGCTC 1 cut(s) 550
SalI GTCGAC 1 cut(s) 105
SaqAI TTAA 5 cut(s) 297, 665, 887, 1163, 1227
SatI GCNGC 2 cut(s) 754, 1307
Sau3AI GATC 4 cut(s) 268, 316, 607, 1013
Sau96I GGNCC 4 cut(s) 598, 623, 1181, 1195
ScrFI CCNGG 5 cut(s) 56, 220, 590, 792, 1257
SduI GDGCHC 2 cut(s) 550, 764
SfaNI GCATC 1 cut(s) 319
Sfr274I CTCGAG 1 cut(s) 339
SinI GGWCC 2 cut(s) 1181, 1195
SlaI CTCGAG 1 cut(s) 339
SmlI CTYRAG 2 cut(s) 339, 757
SmoI CTYRAG 2 cut(s) 339, 757
SpeI ACTAGT 1 cut(s) 575
Sse9I AATT 5 cut(s) 419, 657, 774, 864, 1041
SsiI CCGC 4 cut(s) 130, 566, 1296, 1309
SspI AATATT 1 cut(s) 123
SspMI CTAG 5 cut(s) 482, 576, 815, 843, 989
SstI GAGCTC 1 cut(s) 550
StyD4I CCNGG 5 cut(s) 54, 218, 588, 790, 1255
StyI CCWWGG 1 cut(s) 988
TaaI ACNGT 5 cut(s) 10, 391, 925, 1120, 1199
TaiI ACGT 1 cut(s) 853
TaqI TCGA 6 cut(s) 50, 66, 106, 340, 363, 1088
TasI AATT 5 cut(s) 419, 657, 774, 864, 1041
TfiI GAWTC 7 cut(s) 365, 880, 1034, 1090, 1130, 1139, 1211
Tru1I TTAA 5 cut(s) 297, 665, 887, 1163, 1227
Tru9I TTAA 5 cut(s) 297, 665, 887, 1163, 1227
TscAI CASTG 3 cut(s) 546, 658, 1252
TseFI GTSAC 1 cut(s) 1114
TseI GCWGC 2 cut(s) 753, 1306
Tsp45I GTSAC 1 cut(s) 1114
TspDTI ATGAA 4 cut(s) 68, 603, 684, 1094
TspRI CASTG 3 cut(s) 546, 658, 1252
VpaK11BI GGWCC 2 cut(s) 1181, 1195
XapI RAATTY 1 cut(s) 419
XhoI CTCGAG 1 cut(s) 339
XmaJI CCTAGG 1 cut(s) 988
XmiI GTMKAC 1 cut(s) 106
XmnI GAANNNNTTC 1 cut(s) 199
XspI CTAG 5 cut(s) 482, 576, 815, 843, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.