Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8164096.1

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 407

Gene Structure 406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8164096.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 406 bp

atggtcaaaaatgcaaatgtggttgttgcttcattggctcagtctgtttcgggactgggagtgccagtagattctggtagagttgggcactgcttgagcacttttggtcaaattgtctgccaacttcccggaaacaccaaactctcgcttcttggtcttcaccaaatgcctaaatcgtcaggtgaacatgtcaatcacggagctctttctgtcccatcaggcagtttggaacaccatacgtctcctccaacaacggctgaagcatctgctccacccctaagaacaaactcacaaggaaacacgtcagcaactggatccattgctgtgatgttcgaatctgaaattgacgagaccacaaagattgggagttgggttgagatgaagaaattgaatcccaggcatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

135

Amino Acids

14.05

Weight (kDa)

7.06

Isoelectric Point (pI)

30.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	309, 322
AcuI	CTGAAG	1 cut(s)	279
AflIII	ACRYGT	2 cut(s)	187, 300
AgsI	TTSAA	1 cut(s)	391
AjiI	CACGTC	1 cut(s)	303
AjnI	CCWGG	1 cut(s)	395
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
Alw21I	GWGCWC	2 cut(s)	101, 205
Alw26I	GTCTC	2 cut(s)	246, 344
AlwI	GGATC	2 cut(s)	309, 322
AlwNI	CAGNNNCTG	1 cut(s)	311
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	152, 194
AsuII	TTCGAA	1 cut(s)	333
BaeGI	GKGCMC	1 cut(s)	90
BamHI	GGATCC	1 cut(s)	314
BanII	GRGCYC	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	2 cut(s)	101, 205
BccI	CCATC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	1 cut(s)	397
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	246, 344
Bme1390I	CCNGG	2 cut(s)	129, 397
BmgBI	CACGTC	1 cut(s)	303
BmiI	GGNNCC	1 cut(s)	316
BmrFI	CCNGG	2 cut(s)	129, 397
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	1 cut(s)	272
BmuI	ACTGGG	1 cut(s)	65
BpiI	GAAGAC	1 cut(s)	149
Bpu14I	TTCGAA	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	115
BpuMI	CCSGG	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	395
BsaXI	ACNNNNNCTCC	4 cut(s)	51, 81, 229, 259
Bse1I	ACTGG	3 cut(s)	60, 65, 316
Bse3DI	GCAATG	1 cut(s)	318
BseBI	CCWGG	1 cut(s)	397
BseDI	CCNNGG	1 cut(s)	395
BseMI	GCAATG	1 cut(s)	318
BseMII	CTCAG	1 cut(s)	53
BseNI	ACTGG	3 cut(s)	60, 65, 316
BseRI	GAGGAG	1 cut(s)	234
BseSI	GKGCMC	1 cut(s)	90
BsiHKAI	GWGCWC	2 cut(s)	101, 205
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	2 cut(s)	66, 197
BsmAI	GTCTC	2 cut(s)	246, 344
BsmBI	CGTCTC	1 cut(s)	246
BsmFI	GGGAC	2 cut(s)	66, 197
Bso31I	GGTCTC	1 cut(s)	344
Bsp119I	TTCGAA	1 cut(s)	333
Bsp1286I	GDGCHC	3 cut(s)	90, 101, 205
Bsp143I	GATC	1 cut(s)	314
BspCNI	CTCAG	1 cut(s)	52
BspLI	GGNNCC	1 cut(s)	316
BspPI	GGATC	2 cut(s)	309, 322
BspT104I	TTCGAA	1 cut(s)	333
BspTNI	GGTCTC	1 cut(s)	344
BsrDI	GCAATG	1 cut(s)	318
BsrI	ACTGG	3 cut(s)	60, 65, 316
BssECI	CCNNGG	1 cut(s)	395
BssMI	GATC	1 cut(s)	314
Bst2UI	CCWGG	1 cut(s)	397
BstBI	TTCGAA	1 cut(s)	333
BstDEI	CTNAG	2 cut(s)	39, 278
BstKTI	GATC	1 cut(s)	317
BstMAI	GTCTC	2 cut(s)	246, 344
BstMBI	GATC	1 cut(s)	314
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNI	CCWGG	1 cut(s)	397
BstNSI	RCATGY	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	127, 395
BstSLI	GKGCMC	1 cut(s)	90
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BtrI	CACGTC	1 cut(s)	303
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	88
CaiI	CAGNNNCTG	1 cut(s)	311
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	3 cut(s)	38, 203, 257
CviKI_1	RGCY	3 cut(s)	38, 203, 257
DdeI	CTNAG	2 cut(s)	39, 278
DpnI	GATC	1 cut(s)	316
DpnII	GATC	1 cut(s)	314
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco31I	GGTCTC	1 cut(s)	344
Eco53kI	GAGCTC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	279
EcoICRI	GAGCTC	1 cut(s)	203
EcoRII	CCWGG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	205
Esp3I	CGTCTC	1 cut(s)	246
FaeI	CATG	1 cut(s)	191
FaiI	YATR	2 cut(s)	189, 237
FaqI	GGGAC	2 cut(s)	66, 197
FatI	CATG	1 cut(s)	187
FriOI	GRGCYC	1 cut(s)	205
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	1 cut(s)	191
HinfI	GANTC	3 cut(s)	71, 335, 391
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	152, 194
Hpy166II	GTNNAC	1 cut(s)	185
Hpy188I	TCNGA	1 cut(s)	340
Hpy188III	TCNNGA	1 cut(s)	51
Hpy8I	GTNNAC	1 cut(s)	185
HpyCH4IV	ACGT	2 cut(s)	239, 302
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	2 cut(s)	39, 278
HpySE526I	ACGT	2 cut(s)	239, 302
Hsp92II	CATG	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	314
LmnI	GCTCC	2 cut(s)	200, 274
LpnPI	CCDG	8 cut(s)	41, 60, 78, 142, 165, 204, 297, 382
LweI	GCATC	1 cut(s)	272
MaeII	ACGT	2 cut(s)	239, 302
MalI	GATC	1 cut(s)	316
MboI	GATC	1 cut(s)	314
MboII	GAAGA	2 cut(s)	149, 394
MflI	RGATCY	1 cut(s)	314
MhlI	GDGCHC	3 cut(s)	90, 101, 205
MluCI	AATT	3 cut(s)	111, 342, 386
MmeI	TCCRAC	1 cut(s)	272
MnlI	CCTC	1 cut(s)	255
MslI	CAYNNNNRTG	1 cut(s)	323
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	129, 397
MvaI	CCWGG	1 cut(s)	397
MwoI	GCNNNNNNNGC	1 cut(s)	35
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	1 cut(s)	314
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	1 cut(s)	316
NspI	RCATGY	1 cut(s)	191
NspV	TTCGAA	1 cut(s)	333
PciI	ACATGT	1 cut(s)	187
PfeI	GAWTC	3 cut(s)	71, 335, 391
PfoI	TCCNGGA	1 cut(s)	127
PscI	ACATGT	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	205
Psp6I	CCWGG	1 cut(s)	395
PspGI	CCWGG	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	323
SacI	GAGCTC	1 cut(s)	205
Sau3AI	GATC	1 cut(s)	314
ScrFI	CCNGG	2 cut(s)	129, 397
SduI	GDGCHC	3 cut(s)	90, 101, 205
SetI	ASST	4 cut(s)	184, 205, 242, 305
SfaNI	GCATC	1 cut(s)	272
SfuI	TTCGAA	1 cut(s)	333
SmiMI	CAYNNNNRTG	1 cut(s)	323
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
Sse9I	AATT	3 cut(s)	111, 342, 386
SstI	GAGCTC	1 cut(s)	205
StyD4I	CCNGG	2 cut(s)	127, 395
TaiI	ACGT	2 cut(s)	242, 305
TaqI	TCGA	1 cut(s)	333
TasI	AATT	3 cut(s)	111, 342, 386
TfiI	GAWTC	3 cut(s)	71, 335, 391
TscAI	CASTG	1 cut(s)	95
TspDTI	ATGAA	2 cut(s)	21, 395
TspGWI	ACGGA	1 cut(s)	213
TspRI	CASTG	1 cut(s)	95
XceI	RCATGY	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.