Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Reverse (-)

79771956 .. 79774333

Gene Structure 2378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036374

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGAGACTGAGAGAGAGGCAAGACCAGGTTGAGAGAATGGTGTCCTTGTTTGGGCCTTCTAAAGGAAGCCCATGTCAAGGAGGCAACACCCCTTTAAAGGTAGAAGTTGATTTCTTGGGGGGTTTGTTATGGAAGCATAATAATGATAATGATGGGGGTCATCAATACCCTGATGCTCTTAGTAGAGCTGGGATTAGAACTGGGTTTGATTCTAGGTTGAGTATTGAAATAGCGGTGAGGGAGAATGATGCTCTTTTGACTGAGTTTGTGGCCGGTCAGAAGTACAGGAATGATGGTTTTGATGTTTCAGAATGTCAGGTTTCTCTAGCTAAAGTGTCTTATATGGCAAATGTGAGCAATTGGTTGTCTGCCATTGCAATTCCAGTGGGAGCTCGGTGCAGGGACGTCGCGGTTGTTACGAGTCCTTCCCATCAGGGAAAGGGCCTAACTGATCGATCATCATTCGGACCACCTCTTCTAAATGAGTATAATGGCAGTGCAATTGGCATAATGGTGAAAAATGCAAATGTGGTTGTTGCTTCATTGGCTCAGTCTGTTTCGGGACTGGGAGTGCCAGTAGGTTCTGGTAGAGTTGGGCACTGCTTGAGCACTTTTGGTCAAATTGTCTGCCAACTTCCTGGAAACACCAAACTCTCGCTTCTTGGTCTTCACCAAATGCCTAAATCATCAAGTGAACATGTCAATCACGGAGCTCTTTCGGTCCCATCAGGCAGTTTGGAACACCATACATCTCCTCCAACAACGGCTGAAGCGTCTGCTCCACCCCTAAGAACAAACTCACAAGGAAACACGTCAGCGACTGGATCCATTGCTGTGATGTTCGAATCTGAAATTGACAAGACCACAAAGATTGGGAGTTGGGTTGAGATGAAGAAATTGAATCCCAGGCAATTAGAATGGGCCGTGTCTGTGTCCGATGACCCTAAAGATTCAGTTGGATGGGGAATAAGTTTAAATGGGATGGTTGGAGGTCCCAATAGCTGTGACCATTTTCAGATGGAATCCTACTTGAAATTTAACGTAAGTGAGAGATTCAGTGTAAACCCTGGTATTGTACATATAATCGATGGCAATGCCAAAATGACTGCCCTTATGCTTAGGTCTAATTGGTCTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

380

Amino Acids

40.57

Weight (kDa)

6.83

Isoelectric Point (pI)

33.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	408
AccII	CGCG	1 cut(s)	410
AciI	CCGC	2 cut(s)	233, 410
AclWI	GGATC	2 cut(s)	819, 832
AcoI	YGGCCR	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	1034
AcuI	CTGAAG	1 cut(s)	789
AcyI	GRCGYC	1 cut(s)	405
AfaI	GTAC	2 cut(s)	284, 1077
AfiI	CCNNNNNNNGG	4 cut(s)	51, 62, 77, 97
AflIII	ACRYGT	2 cut(s)	697, 810
AgsI	TTSAA	3 cut(s)	227, 901, 1033
AjiI	CACGTC	1 cut(s)	813
AjnI	CCWGG	4 cut(s)	24, 637, 905, 1066
AluBI	AGCT	5 cut(s)	188, 329, 392, 713, 1002
AluI	AGCT	5 cut(s)	188, 329, 392, 713, 1002
Alw21I	GWGCWC	3 cut(s)	394, 611, 715
AlwI	GGATC	2 cut(s)	819, 832
AlwNI	CAGNNNCTG	1 cut(s)	821
AoxI	GGCC	4 cut(s)	53, 270, 442, 921
ApoI	RAATTY	1 cut(s)	1034
AspS9I	GGNCC	6 cut(s)	53, 442, 467, 721, 921, 992
AsuHPI	GGTGA	3 cut(s)	247, 526, 662
AsuII	TTCGAA	1 cut(s)	843
AvaII	GGWCC	3 cut(s)	467, 721, 992
BaeGI	GKGCMC	1 cut(s)	600
BamHI	GGATCC	1 cut(s)	824
BanII	GRGCYC	2 cut(s)	394, 715
BbsI	GAAGAC	1 cut(s)	659
Bbv12I	GWGCWC	3 cut(s)	394, 611, 715
BccI	CCATC	8 cut(s)	146, 287, 438, 733, 954, 976, 1012, 1082
BceAI	ACGGC	2 cut(s)	780, 908
BcgI	CGANNNNNNTGC	4 cut(s)	388, 422, 1076, 1110
BciT130I	CCWGG	4 cut(s)	26, 639, 907, 1068
BfaI	CTAG	2 cut(s)	213, 326
Bme1390I	CCNGG	4 cut(s)	26, 639, 907, 1068
Bme18I	GGWCC	3 cut(s)	467, 721, 992
BmgBI	CACGTC	1 cut(s)	813
BmgT120I	GGNCC	6 cut(s)	53, 442, 467, 721, 921, 992
BmiI	GGNNCC	3 cut(s)	723, 826, 994
BmrFI	CCNGG	4 cut(s)	26, 639, 907, 1068
BmrI	ACTGGG	2 cut(s)	210, 575
BmsI	GCATC	2 cut(s)	163, 238
BmuI	ACTGGG	2 cut(s)	210, 575
BpiI	GAAGAC	1 cut(s)	659
Bpu10I	CCTNAGC	1 cut(s)	1118
Bpu14I	TTCGAA	1 cut(s)	843
BpuEI	CTTGAG	1 cut(s)	625
Bsa29I	ATCGAT	2 cut(s)	454, 1086
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	2 cut(s)	905, 1066
BsaXI	ACNNNNNCTCC	4 cut(s)	561, 591, 739, 769
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 62, 77, 97
Bse118I	RCCGGY	1 cut(s)	272
Bse1I	ACTGG	5 cut(s)	205, 383, 570, 575, 826
Bse3DI	GCAATG	3 cut(s)	372, 828, 1099
BseBI	CCWGG	4 cut(s)	26, 639, 907, 1068
BseCI	ATCGAT	2 cut(s)	454, 1086
BseDI	CCNNGG	2 cut(s)	905, 1066
BseGI	GGATG	2 cut(s)	965, 987
BseLI	CCNNNNNNNGG	4 cut(s)	51, 62, 77, 97
BseMI	GCAATG	3 cut(s)	372, 828, 1099
BseMII	CTCAG	2 cut(s)	252, 563
BseNI	ACTGG	5 cut(s)	205, 383, 570, 575, 826
BseRI	GAGGAG	1 cut(s)	744
BseSI	GKGCMC	1 cut(s)	600
BseYI	CCCAGC	1 cut(s)	188
BsgI	GTGCAG	1 cut(s)	418
Bsh1236I	CGCG	1 cut(s)	410
BshFI	GGCC	4 cut(s)	55, 272, 444, 923
BshVI	ATCGAT	2 cut(s)	454, 1086
BsiHKAI	GWGCWC	3 cut(s)	394, 611, 715
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	4 cut(s)	416, 576, 707, 978
BslI	CCNNNNNNNGG	4 cut(s)	51, 62, 77, 97
BsmFI	GGGAC	4 cut(s)	416, 576, 707, 978
BsnI	GGCC	4 cut(s)	55, 272, 444, 923
Bsp119I	TTCGAA	1 cut(s)	843
Bsp1286I	GDGCHC	4 cut(s)	394, 600, 611, 715
Bsp1407I	TGTACA	1 cut(s)	1075
Bsp143I	GATC	3 cut(s)	451, 455, 824
BspACI	CCGC	2 cut(s)	233, 410
BspANI	GGCC	4 cut(s)	55, 272, 444, 923
BspCNI	CTCAG	2 cut(s)	253, 562
BspDI	ATCGAT	2 cut(s)	454, 1086
BspFNI	CGCG	1 cut(s)	410
BspLI	GGNNCC	3 cut(s)	723, 826, 994
BspPI	GGATC	2 cut(s)	819, 832
BspT104I	TTCGAA	1 cut(s)	843
BsrDI	GCAATG	3 cut(s)	372, 828, 1099
BsrFI	RCCGGY	1 cut(s)	272
BsrGI	TGTACA	1 cut(s)	1075
BsrI	ACTGG	5 cut(s)	205, 383, 570, 575, 826
BssAI	RCCGGY	1 cut(s)	272
BssECI	CCNNGG	2 cut(s)	905, 1066
BssMI	GATC	3 cut(s)	451, 455, 824
BssNI	GRCGYC	1 cut(s)	405
Bst2UI	CCWGG	4 cut(s)	26, 639, 907, 1068
Bst6I	CTCTTC	1 cut(s)	480
BstACI	GRCGYC	1 cut(s)	405
BstAUI	TGTACA	1 cut(s)	1075
BstBI	TTCGAA	1 cut(s)	843
BstDEI	CTNAG	6 cut(s)	8, 179, 261, 549, 788, 1118
BstENI	CCTNNNNNAGG	1 cut(s)	60
BstF5I	GGATG	2 cut(s)	965, 987
BstFNI	CGCG	1 cut(s)	410
BstKTI	GATC	3 cut(s)	454, 458, 827
BstMBI	GATC	3 cut(s)	451, 455, 824
BstMWI	GCNNNNNNNGC	1 cut(s)	545
BstNI	CCWGG	4 cut(s)	26, 639, 907, 1068
BstNSI	RCATGY	1 cut(s)	701
BstSCI	CCNGG	4 cut(s)	24, 637, 905, 1066
BstSLI	GKGCMC	1 cut(s)	600
BstUI	CGCG	1 cut(s)	410
BstV2I	GAAGAC	1 cut(s)	659
BstX2I	RGATCY	1 cut(s)	824
BstXI	CCANNNNNNTGG	1 cut(s)	638
BstYI	RGATCY	1 cut(s)	824
Bsu15I	ATCGAT	2 cut(s)	454, 1086
BsuRI	GGCC	4 cut(s)	55, 272, 444, 923
BsuTUI	ATCGAT	2 cut(s)	454, 1086
BtrI	CACGTC	1 cut(s)	813
BtsCI	GGATG	2 cut(s)	965, 987
BtsI	GCAGTG	2 cut(s)	502, 598
BtsIMutI	CAGTG	4 cut(s)	390, 502, 598, 1063
CaiI	CAGNNNCTG	1 cut(s)	821
Cfr10I	RCCGGY	1 cut(s)	272
Cfr13I	GGNCC	6 cut(s)	53, 442, 467, 721, 921, 992
ClaI	ATCGAT	2 cut(s)	454, 1086
CseI	GACGC	1 cut(s)	762
CsiI	ACCWGGT	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	283, 1076
CspCI	CAANNNNNGTGG	4 cut(s)	366, 401, 853, 888
CviAII	CATG	2 cut(s)	72, 698
CviQI	GTAC	2 cut(s)	283, 1076
DdeI	CTNAG	6 cut(s)	8, 179, 261, 549, 788, 1118
DpnI	GATC	3 cut(s)	453, 457, 826
DpnII	GATC	3 cut(s)	451, 455, 824
DraI	TTTAAA	2 cut(s)	96, 975
EaeI	YGGCCR	1 cut(s)	270
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Ecl136II	GAGCTC	2 cut(s)	392, 713
Eco24I	GRGCYC	2 cut(s)	394, 715
Eco47I	GGWCC	3 cut(s)	467, 721, 992
Eco53kI	GAGCTC	2 cut(s)	392, 713
Eco57I	CTGAAG	1 cut(s)	789
EcoICRI	GAGCTC	2 cut(s)	392, 713
EcoNI	CCTNNNNNAGG	1 cut(s)	60
EcoO109I	RGGNCCY	2 cut(s)	442, 992
EcoRII	CCWGG	4 cut(s)	24, 637, 905, 1066
EcoT38I	GRGCYC	2 cut(s)	394, 715
FaeI	CATG	2 cut(s)	75, 701
FaqI	GGGAC	4 cut(s)	416, 576, 707, 978
FatI	CATG	2 cut(s)	71, 697
FokI	GGATG	2 cut(s)	972, 994
FriOI	GRGCYC	2 cut(s)	394, 715
FspBI	CTAG	2 cut(s)	213, 326
GsaI	CCCAGC	1 cut(s)	192
HaeIII	GGCC	4 cut(s)	55, 272, 444, 923
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	1 cut(s)	762
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	2 cut(s)	75, 701
HinfI	GANTC	7 cut(s)	209, 421, 845, 901, 950, 1022, 1053
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	3 cut(s)	247, 526, 662
Hpy166II	GTNNAC	2 cut(s)	695, 1063
Hpy188I	TCNGA	7 cut(s)	279, 310, 467, 850, 937, 1017, 1139
Hpy188III	TCNNGA	1 cut(s)	561
Hpy8I	GTNNAC	2 cut(s)	695, 1063
Hpy99I	CGWCG	1 cut(s)	410
HpyAV	CCTTC	2 cut(s)	66, 435
HpyCH4IV	ACGT	3 cut(s)	405, 812, 1041
HpyCH4V	TGCA	4 cut(s)	377, 399, 500, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	545
HpyF3I	CTNAG	6 cut(s)	8, 179, 261, 549, 788, 1118
HpySE526I	ACGT	3 cut(s)	405, 812, 1041
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	2 cut(s)	75, 701
Kzo9I	GATC	3 cut(s)	451, 455, 824
LmnI	GCTCC	3 cut(s)	389, 710, 784
LweI	GCATC	2 cut(s)	163, 238
MabI	ACCWGGT	1 cut(s)	24
MaeI	CTAG	2 cut(s)	213, 326
MaeII	ACGT	3 cut(s)	405, 812, 1041
MaeIII	GTNAC	2 cut(s)	415, 1004
MalI	GATC	3 cut(s)	453, 457, 826
MboI	GATC	3 cut(s)	451, 455, 824
MboII	GAAGA	3 cut(s)	467, 659, 904
MfeI	CAATTG	2 cut(s)	358, 501
MflI	RGATCY	1 cut(s)	824
MhlI	GDGCHC	4 cut(s)	394, 600, 611, 715
MluCI	AATT	9 cut(s)	358, 378, 501, 621, 852, 896, 911, 1034, 1126
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	3 cut(s)	782, 937, 967
MnlI	CCTC	6 cut(s)	9, 74, 231, 483, 765, 983
MseI	TTAA	3 cut(s)	95, 974, 1038
MslI	CAYNNNNRTG	3 cut(s)	141, 512, 833
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	4 cut(s)	26, 639, 907, 1068
MunI	CAATTG	2 cut(s)	358, 501
MvaI	CCWGG	4 cut(s)	26, 639, 907, 1068
MvnI	CGCG	1 cut(s)	410
MwoI	GCNNNNNNNGC	1 cut(s)	545
NdeII	GATC	3 cut(s)	451, 455, 824
NlaIII	CATG	2 cut(s)	75, 701
NlaIV	GGNNCC	3 cut(s)	723, 826, 994
NmuCI	GTSAC	1 cut(s)	1004
NspI	RCATGY	1 cut(s)	701
NspV	TTCGAA	1 cut(s)	843
PciI	ACATGT	1 cut(s)	697
PcsI	WCGNNNNNNNCGW	1 cut(s)	770
PfeI	GAWTC	6 cut(s)	209, 845, 901, 950, 1022, 1053
PfoI	TCCNGGA	1 cut(s)	637
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PpuMI	RGGWCCY	1 cut(s)	992
PscI	ACATGT	1 cut(s)	697
Psp124BI	GAGCTC	2 cut(s)	394, 715
Psp5II	RGGWCCY	1 cut(s)	992
Psp6I	CCWGG	4 cut(s)	24, 637, 905, 1066
PspFI	CCCAGC	1 cut(s)	188
PspGI	CCWGG	4 cut(s)	24, 637, 905, 1066
PspN4I	GGNNCC	3 cut(s)	723, 826, 994
PspPI	GGNCC	6 cut(s)	53, 442, 467, 721, 921, 992
PspPPI	RGGWCCY	1 cut(s)	992
PstNI	CAGNNNCTG	1 cut(s)	821
PsuI	RGATCY	1 cut(s)	824
RsaI	GTAC	2 cut(s)	284, 1077
RsaNI	GTAC	2 cut(s)	283, 1076
RseI	CAYNNNNRTG	3 cut(s)	141, 512, 833
SacI	GAGCTC	2 cut(s)	394, 715
SaqAI	TTAA	3 cut(s)	95, 974, 1038
Sau3AI	GATC	3 cut(s)	451, 455, 824
Sau96I	GGNCC	6 cut(s)	53, 442, 467, 721, 921, 992
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	4 cut(s)	26, 639, 907, 1068
SduI	GDGCHC	4 cut(s)	394, 600, 611, 715
SexAI	ACCWGGT	1 cut(s)	24
SfaNI	GCATC	2 cut(s)	163, 238
SfuI	TTCGAA	1 cut(s)	843
SinI	GGWCC	3 cut(s)	467, 721, 992
SmiMI	CAYNNNNRTG	3 cut(s)	141, 512, 833
SmlI	CTYRAG	1 cut(s)	604
SmoI	CTYRAG	1 cut(s)	604
Sse9I	AATT	9 cut(s)	358, 378, 501, 621, 852, 896, 911, 1034, 1126
SsiI	CCGC	2 cut(s)	233, 410
SspMI	CTAG	2 cut(s)	213, 326
SstI	GAGCTC	2 cut(s)	394, 715
StyD4I	CCNGG	4 cut(s)	24, 637, 905, 1066
TaiI	ACGT	3 cut(s)	408, 815, 1044
TaqI	TCGA	3 cut(s)	454, 843, 1086
TaqII	GACCGA	1 cut(s)	709
TasI	AATT	9 cut(s)	358, 378, 501, 621, 852, 896, 911, 1034, 1126
TatI	WGTACW	2 cut(s)	282, 1075
TfiI	GAWTC	6 cut(s)	209, 845, 901, 950, 1022, 1053
Tru1I	TTAA	3 cut(s)	95, 974, 1038
Tru9I	TTAA	3 cut(s)	95, 974, 1038
TscAI	CASTG	4 cut(s)	390, 502, 605, 1063
TseFI	GTSAC	1 cut(s)	1004
Tsp45I	GTSAC	1 cut(s)	1004
TspDTI	ATGAA	2 cut(s)	531, 905
TspGWI	ACGGA	1 cut(s)	723
TspRI	CASTG	4 cut(s)	390, 502, 605, 1063
VpaK11BI	GGWCC	3 cut(s)	467, 721, 992
XagI	CCTNNNNNAGG	1 cut(s)	60
XapI	RAATTY	1 cut(s)	1034
XceI	RCATGY	1 cut(s)	701
XspI	CTAG	2 cut(s)	213, 326
ZraI	GACGTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.