Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004161

Physical Location & Seq

Genomic Coordinates Forward (+)

62598583 .. 62601257

Gene Structure 2675 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG447700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGGAAGCCAAAGCTTTCGCAGCAGACAAGTTTAAAGCTCTGACGAAATCCACCCAGGACTTCTTCGACAGTCTCATCCATGGGCCTCCTAAACCTCCACCTCGCCGCAATAATCCGATTGCTATATTGAAGCGGTTGCAACGAGAAGCGTTTTCGGACTTGATGAAATTGAGGGATAGACAGGATAAAGTCGAGAAAATTGTGTCCTTGTATGGGACTTCAGGAGGAAAAGGGAGTCCTTTCCAGGAGGCCAACACCCTTATCAGGGGAGAGTTTGATCACTTGGGGGCGTTATCATTCATGCATAATGATGATGAGTCTCATCAAGAATCCGAGGCTCTTGGTCAGGCAGGAATATTAACTGGGATTAAGTCAAGGTTCAGTGTTGAAACAACTGTTCGAGAAAATGATACGCTTGTGGCGGAGTTTGTGGCCAGAGAAAAACACAAAAATGATCTCTCTGATCTTTCAGAATGCTCGCTTTCTCTAGCAAAAGTGGCATATACAGCAAATGTTAGTGATTGGTTATCTGCAATTGCAATCCCAGTGGGAGCTCAATGCAGGGATGTCGCAGTTCTTACAAATCCTTCTCATCAGGGAAAGGGCCTAACTCATTTTTCATCATTTGGACCACCTCTTTTAAATGAGCGTAATGGTAGTGCAATTGGCTTGATGGTAAAAAAATCAAATGTTGTTGCTTCATTGGCACAGTTTGTTTCTGGACAAGTAGGTTCTAGTAGAGTCGGGCGCTGCTTCAGCACTTTTGGGCAAGTTGTCTGTCAACTCCCTGCAAGAACAAAGCTCTCACTTCTGGGTCTTCACCAAGCGCCTAACTTATCTAGTGAACATGTCAATCATGTAGCTTCTAACTTTGGATTAGGCGATTTGATACAACATCTATCCCCTGAGACAACAGTTGAAGCATATACTCCACCCCTGGGAACAAGCTCACAGGAAAATGTGTCAACTGGATCCATTGCTCTGATGCTGGAATCTGAAATTGATGAGATTACAAAGATTGGAGGTTGGATTGAGATGAAGCAATCGAATCCCAAGAATTTAGAATGGGCTGTTACCGTATCTGATGACTCTGAAGATTCCTTTGGATGGGGAGTGAGTTTAAATGGTGGACTGGGAGTCGAAGGCCCCCAAAGTTGGAACCATTTCCAGGTTGAATCCTACTTGAAACTTAACTTGGGTAAGAGTCTGAGTGTAAAGCCAGGTATCACAACACATCTAGTGGATGGCAAACCCAGAATGACTGCTCTGATGCTTCGATCTAACTGGTTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

431

Amino Acids

46.81

Weight (kDa)

6.37

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004161)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11320
fragaria_vesca	FvH4_2g38110 FvH4_2g38110 FvH4_3g40530 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670 FvH4_3g40670
malus_domestica	MD08G1009600.v1.1
prunus_persica	Prupe.1G361500_v2.0.a1 Prupe.1G361500_v2.0.a1
pyrus_communis	pycom08g00810
rosa_chinensis	RchiOBHm_Chr5g0073211 RchiOBHm_Chr6g0303441
rosa_laevigata	RLG00000011085 RLG00000036374
rosa_multiflora	Rmu_co8164096.1_g000001 Rmu_ssc0000114.1_g000051
rosa_roxburghii	Rroxscaffold_1G00007980 Rroxscaffold_7G00164760
rosa_rugosa	Rorug05G0422300 Rorug06G0321100 Rorug06G0321200
rosa_samantha	Rh5AG479000 Rh5BG499700 Rh5CG522900 Rh5DG511800 Rh6AG435800 Rh6BG467700 Rh6CG447700 Rh6DG434400
rosa_wichuraiana	Rw5G044530 Rw6G037710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	106, 133, 422
AclWI	GGATC	2 cut(s)	966, 979
AcoI	YGGCCR	1 cut(s)	432
AcsI	RAATTY	1 cut(s)	1057
AcuI	CTGAAG	3 cut(s)	204, 739, 1113
AfiI	CCNNNNNNNGG	7 cut(s)	213, 264, 265, 938, 1107, 1155, 1168
AflIII	ACRYGT	1 cut(s)	847
AgsI	TTSAA	5 cut(s)	130, 389, 920, 1175, 1186
AhdI	GACNNNNNGTC	1 cut(s)	1136
AjnI	CCWGG	5 cut(s)	54, 243, 936, 1167, 1219
AjuI	GAANNNNNNNTTGG	4 cut(s)	1086, 1118, 1178, 1210
AluBI	AGCT	6 cut(s)	14, 38, 554, 802, 863, 948
AluI	AGCT	6 cut(s)	14, 38, 554, 802, 863, 948
Alw21I	GWGCWC	1 cut(s)	556
Alw26I	GTCTC	3 cut(s)	77, 324, 902
AlwI	GGATC	2 cut(s)	966, 979
AoxI	GGCC	5 cut(s)	83, 249, 432, 604, 1144
ApeKI	GCWGC	2 cut(s)	20, 750
ApoI	RAATTY	1 cut(s)	1057
Asp700I	GAANNNNTTC	1 cut(s)	1163
AspLEI	GCGC	2 cut(s)	750, 829
AspS9I	GGNCC	4 cut(s)	83, 604, 629, 1145
AsuHPI	GGTGA	1 cut(s)	812
AvaII	GGWCC	1 cut(s)	629
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BalI	TGGCCA	1 cut(s)	434
BamHI	GGATCC	1 cut(s)	971
BanII	GRGCYC	1 cut(s)	556
BbsI	GAAGAC	1 cut(s)	809
Bbv12I	GWGCWC	1 cut(s)	556
BbvI	GCAGC	2 cut(s)	32, 737
BccI	CCATC	3 cut(s)	667, 1101, 1238
BcgI	CGANNNNNNTGC	2 cut(s)	550, 584
BciT130I	CCWGG	5 cut(s)	56, 245, 938, 1169, 1221
BclI	TGATCA	1 cut(s)	277
BcoDI	GTCTC	3 cut(s)	77, 324, 902
BfaI	CTAG	4 cut(s)	488, 735, 840, 1238
BfoI	RGCGCY	2 cut(s)	751, 830
BisI	GCNGC	3 cut(s)	21, 106, 751
BlsI	GCNGC	3 cut(s)	22, 107, 752
Bme1390I	CCNGG	5 cut(s)	56, 245, 938, 1169, 1221
Bme18I	GGWCC	1 cut(s)	629
BmeRI	GACNNNNNGTC	1 cut(s)	1136
BmgT120I	GGNCC	4 cut(s)	83, 604, 629, 1145
BmiI	GGNNCC	4 cut(s)	973, 1147, 1160, 1289
BmrFI	CCNGG	5 cut(s)	56, 245, 938, 1169, 1221
BmrI	ACTGGG	3 cut(s)	372, 539, 1142
BmsI	GCATC	2 cut(s)	975, 1260
BmuI	ACTGGG	3 cut(s)	372, 539, 1142
BpiI	GAAGAC	1 cut(s)	809
BsaJI	CCNNGG	5 cut(s)	54, 79, 333, 936, 937
Bsc4I	CCNNNNNNNGG	7 cut(s)	213, 264, 265, 938, 1107, 1155, 1168
Bse1I	ACTGG	5 cut(s)	367, 545, 973, 1137, 1289
Bse3DI	GCAATG	1 cut(s)	975
BseBI	CCWGG	5 cut(s)	56, 245, 938, 1169, 1221
BseDI	CCNNGG	5 cut(s)	54, 79, 333, 936, 937
BseGI	GGATG	4 cut(s)	75, 571, 1112, 1249
BseLI	CCNNNNNNNGG	7 cut(s)	213, 264, 265, 938, 1107, 1155, 1168
BseMI	GCAATG	1 cut(s)	975
BseMII	CTCAG	2 cut(s)	897, 1199
BseNI	ACTGG	5 cut(s)	367, 545, 973, 1137, 1289
BseXI	GCAGC	2 cut(s)	32, 737
BshFI	GGCC	5 cut(s)	85, 251, 434, 606, 1146
BsiHKAI	GWGCWC	1 cut(s)	556
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	7 cut(s)	213, 264, 265, 938, 1107, 1155, 1168
BsmAI	GTCTC	3 cut(s)	77, 324, 902
BsmFI	GGGAC	1 cut(s)	229
BsmI	GAATGC	1 cut(s)	479
BsnI	GGCC	5 cut(s)	85, 251, 434, 606, 1146
Bsp1286I	GDGCHC	1 cut(s)	556
Bsp143I	GATC	5 cut(s)	277, 454, 463, 971, 1277
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	3 cut(s)	106, 133, 422
BspANI	GGCC	5 cut(s)	85, 251, 434, 606, 1146
BspCNI	CTCAG	2 cut(s)	898, 1200
BspLI	GGNNCC	4 cut(s)	973, 1147, 1160, 1289
BspPI	GGATC	2 cut(s)	966, 979
BsrDI	GCAATG	1 cut(s)	975
BsrI	ACTGG	5 cut(s)	367, 545, 973, 1137, 1289
BssECI	CCNNGG	5 cut(s)	54, 79, 333, 936, 937
BssMI	GATC	5 cut(s)	277, 454, 463, 971, 1277
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	5 cut(s)	56, 245, 938, 1169, 1221
Bst4CI	ACNGT	5 cut(s)	71, 397, 711, 916, 1078
BstC8I	GCNNGC	1 cut(s)	479
BstDEI	CTNAG	2 cut(s)	906, 1208
BstDSI	CCRYGG	1 cut(s)	79
BstF5I	GGATG	4 cut(s)	75, 571, 1112, 1249
BstH2I	RGCGCY	2 cut(s)	751, 830
BstHHI	GCGC	2 cut(s)	750, 829
BstKTI	GATC	5 cut(s)	280, 457, 466, 974, 1280
BstMAI	GTCTC	3 cut(s)	77, 324, 902
BstMBI	GATC	5 cut(s)	277, 454, 463, 971, 1277
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 497, 506, 704, 756
BstNI	CCWGG	5 cut(s)	56, 245, 938, 1169, 1221
BstNSI	RCATGY	1 cut(s)	851
BstSCI	CCNGG	5 cut(s)	54, 243, 936, 1167, 1219
BstV1I	GCAGC	2 cut(s)	32, 737
BstV2I	GAAGAC	1 cut(s)	809
BstX2I	RGATCY	1 cut(s)	971
BstYI	RGATCY	1 cut(s)	971
BsuRI	GGCC	5 cut(s)	85, 251, 434, 606, 1146
BtgI	CCRYGG	1 cut(s)	79
BtsCI	GGATG	4 cut(s)	75, 571, 1112, 1249
BtsIMutI	CAGTG	2 cut(s)	388, 552
Cac8I	GCNNGC	1 cut(s)	479
CfoI	GCGC	2 cut(s)	750, 829
Cfr13I	GGNCC	4 cut(s)	83, 604, 629, 1145
CspCI	CAANNNNNGTGG	2 cut(s)	528, 563
CviAII	CATG	4 cut(s)	80, 301, 848, 857
DdeI	CTNAG	2 cut(s)	906, 1208
DpnI	GATC	5 cut(s)	279, 456, 465, 973, 1279
DpnII	GATC	5 cut(s)	277, 454, 463, 971, 1277
DraI	TTTAAA	3 cut(s)	34, 642, 1122
DriI	GACNNNNNGTC	1 cut(s)	1136
EaeI	YGGCCR	1 cut(s)	432
Eam1105I	GACNNNNNGTC	1 cut(s)	1136
EciI	GGCGGA	1 cut(s)	437
Ecl136II	GAGCTC	1 cut(s)	554
Eco130I	CCWWGG	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	556
Eco47I	GGWCC	1 cut(s)	629
Eco53kI	GAGCTC	1 cut(s)	554
Eco57I	CTGAAG	3 cut(s)	204, 739, 1113
EcoICRI	GAGCTC	1 cut(s)	554
EcoO109I	RGGNCCY	2 cut(s)	604, 1145
EcoRII	CCWGG	5 cut(s)	54, 243, 936, 1167, 1219
EcoT14I	CCWWGG	1 cut(s)	79
EcoT22I	ATGCAT	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	4 cut(s)	83, 304, 851, 860
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	4 cut(s)	79, 300, 847, 856
FbaI	TGATCA	1 cut(s)	277
Fnu4HI	GCNGC	3 cut(s)	21, 106, 751
FokI	GGATG	4 cut(s)	62, 578, 1119, 1256
FriOI	GRGCYC	1 cut(s)	556
Fsp4HI	GCNGC	3 cut(s)	21, 106, 751
FspBI	CTAG	4 cut(s)	488, 735, 840, 1238
GlaI	GCGC	2 cut(s)	749, 828
GluI	GCNGC	3 cut(s)	21, 106, 751
HaeII	RGCGCY	2 cut(s)	751, 830
HaeIII	GGCC	5 cut(s)	85, 251, 434, 606, 1146
HhaI	GCGC	2 cut(s)	750, 829
Hin1II	CATG	4 cut(s)	83, 304, 851, 860
Hin6I	GCGC	2 cut(s)	748, 827
HinP1I	GCGC	2 cut(s)	748, 827
HincII	GTYRAC	2 cut(s)	782, 966
HindII	GTYRAC	2 cut(s)	782, 966
HindIII	AAGCTT	1 cut(s)	12
HphI	GGTGA	1 cut(s)	812
Hpy166II	GTNNAC	4 cut(s)	782, 845, 966, 1130
Hpy188III	TCNNGA	5 cut(s)	193, 222, 326, 401, 720
Hpy8I	GTNNAC	4 cut(s)	782, 845, 966, 1130
HpyAV	CCTTC	2 cut(s)	597, 1136
HpyCH4III	ACNGT	5 cut(s)	71, 397, 711, 916, 1078
HpyCH4V	TGCA	7 cut(s)	139, 304, 533, 539, 561, 662, 791
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 497, 506, 704, 756
HpyF3I	CTNAG	2 cut(s)	906, 1208
Hsp92II	CATG	4 cut(s)	83, 304, 851, 860
HspAI	GCGC	2 cut(s)	748, 827
Ksp22I	TGATCA	1 cut(s)	277
Kzo9I	GATC	5 cut(s)	277, 454, 463, 971, 1277
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	2 cut(s)	32, 737
LweI	GCATC	2 cut(s)	975, 1260
MaeI	CTAG	4 cut(s)	488, 735, 840, 1238
MaeIII	GTNAC	1 cut(s)	1072
MalI	GATC	5 cut(s)	279, 456, 465, 973, 1279
MboI	GATC	5 cut(s)	277, 454, 463, 971, 1277
MboII	GAAGA	3 cut(s)	55, 809, 1106
MfeI	CAATTG	2 cut(s)	534, 663
MflI	RGATCY	1 cut(s)	971
MhlI	GDGCHC	1 cut(s)	556
MlsI	TGGCCA	1 cut(s)	434
MluCI	AATT	6 cut(s)	167, 198, 534, 663, 999, 1057
MluNI	TGGCCA	1 cut(s)	434
MlyI	GAGTC	6 cut(s)	244, 326, 750, 1082, 1146, 1213
MmeI	TCCRAC	2 cut(s)	1007, 1136
MnlI	CCTC	9 cut(s)	96, 105, 111, 165, 218, 241, 328, 645, 1016
Mox20I	TGGCCA	1 cut(s)	434
Mph1103I	ATGCAT	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	1163
MscI	TGGCCA	1 cut(s)	434
MseI	TTAA	6 cut(s)	33, 359, 369, 641, 1121, 1191
MslI	CAYNNNNRTG	2 cut(s)	309, 450
Msp20I	TGGCCA	1 cut(s)	434
MspR9I	CCNGG	5 cut(s)	56, 245, 938, 1169, 1221
MunI	CAATTG	2 cut(s)	534, 663
Mva1269I	GAATGC	1 cut(s)	479
MvaI	CCWGG	5 cut(s)	56, 245, 938, 1169, 1221
MwoI	GCNNNNNNNGC	5 cut(s)	20, 497, 506, 704, 756
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	5 cut(s)	277, 454, 463, 971, 1277
NlaIII	CATG	4 cut(s)	83, 304, 851, 860
NlaIV	GGNNCC	4 cut(s)	973, 1147, 1160, 1289
NsiI	ATGCAT	1 cut(s)	306
NspI	RCATGY	1 cut(s)	851
PasI	CCCWGGG	1 cut(s)	937
PciI	ACATGT	1 cut(s)	847
PctI	GAATGC	1 cut(s)	479
PdmI	GAANNNNTTC	1 cut(s)	1163
PfeI	GAWTC	5 cut(s)	329, 992, 1048, 1097, 1175
PfoI	TCCNGGA	1 cut(s)	243
PkrI	GCNGC	3 cut(s)	22, 107, 752
PleI	GAGTC	6 cut(s)	243, 325, 749, 1082, 1145, 1212
PpsI	GAGTC	6 cut(s)	243, 325, 749, 1082, 1145, 1212
PscI	ACATGT	1 cut(s)	847
Psp124BI	GAGCTC	1 cut(s)	556
Psp6I	CCWGG	5 cut(s)	54, 243, 936, 1167, 1219
PspGI	CCWGG	5 cut(s)	54, 243, 936, 1167, 1219
PspN4I	GGNNCC	4 cut(s)	973, 1147, 1160, 1289
PspPI	GGNCC	4 cut(s)	83, 604, 629, 1145
PsuI	RGATCY	1 cut(s)	971
RseI	CAYNNNNRTG	2 cut(s)	309, 450
SacI	GAGCTC	1 cut(s)	556
SaqAI	TTAA	6 cut(s)	33, 359, 369, 641, 1121, 1191
SatI	GCNGC	3 cut(s)	21, 106, 751
Sau3AI	GATC	5 cut(s)	277, 454, 463, 971, 1277
Sau96I	GGNCC	4 cut(s)	83, 604, 629, 1145
SchI	GAGTC	6 cut(s)	244, 326, 750, 1082, 1146, 1213
ScrFI	CCNGG	5 cut(s)	56, 245, 938, 1169, 1221
SduI	GDGCHC	1 cut(s)	556
SfaNI	GCATC	2 cut(s)	975, 1260
SinI	GGWCC	1 cut(s)	629
SmiMI	CAYNNNNRTG	2 cut(s)	309, 450
Sse9I	AATT	6 cut(s)	167, 198, 534, 663, 999, 1057
SsiI	CCGC	3 cut(s)	106, 133, 422
SspI	AATATT	1 cut(s)	357
SspMI	CTAG	4 cut(s)	488, 735, 840, 1238
SstI	GAGCTC	1 cut(s)	556
StyD4I	CCNGG	5 cut(s)	54, 243, 936, 1167, 1219
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	5 cut(s)	71, 397, 711, 916, 1078
TaqI	TCGA	6 cut(s)	66, 192, 400, 1046, 1140, 1276
TasI	AATT	6 cut(s)	167, 198, 534, 663, 999, 1057
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	5 cut(s)	329, 992, 1048, 1097, 1175
Tru1I	TTAA	6 cut(s)	33, 359, 369, 641, 1121, 1191
Tru9I	TTAA	6 cut(s)	33, 359, 369, 641, 1121, 1191
TscAI	CASTG	2 cut(s)	388, 552
TseI	GCWGC	2 cut(s)	20, 750
TspDTI	ATGAA	5 cut(s)	179, 289, 609, 690, 1052
TspRI	CASTG	2 cut(s)	388, 552
VpaK11BI	GGWCC	1 cut(s)	629
XapI	RAATTY	1 cut(s)	1057
XceI	RCATGY	1 cut(s)	851
XmnI	GAANNNNTTC	1 cut(s)	1163
XspI	CTAG	4 cut(s)	488, 735, 840, 1238
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.