Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003287

Physical Location & Seq

Genomic Coordinates Forward (+)

3895130 .. 3896019

Gene Structure 890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11591.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAAAGAGTTGGAAAAAGCTTCAAGGATTCAGGGAATGGAGGTTAACAGAGATAAAGCTAAGGGAGTTCTAGCTCTGTTACAAGAAAGTCAGGAAAAGGAAGCTAAAACTTTCAAAATGAATGAAGCTACAGTAGTTGAAGGGAAGGAATCGGGAACCGAACTTATGGACACAAGATTTCAGATCATCACAGATTTGGTATCCAAAGGAGATGTTGTCCTAAACAAGATACTAAAAACAATTGAACCAACAGATGTTATGACTCAAGCAATAGATGGAGAGGACTTTCATGCTTGCTACGATCTCCTCAACATCGTAAGGAGGACGACACAGCTCCAGGCGCCTGGAAATACGGTGAGGAGACTTATATTCCAGGTGGAGCTGCAGATTCTGATTCCATGTGGAGTTTCTGTGATGAAGATTCAAGAAATCCGAGTTAGGATTTCAGCGGCTCAAAGGGGAAAAAGAATCAGCAGCAAGAGAGGAGATGATTCATGGTTAAGAGAGTACCTGAAGTCATCAAGGAGAAAAAGAACACCAGTTCATCAAAGGAGCTGCTGTGAAAATTCAAAGTTAGAATGTTATGTAATCTATGAAAATCGAAAGAGACCTAATGAAGGAAGATCAGGACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

24.14

Weight (kDa)

9.4

Isoelectric Point (pI)

56.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11591
fragaria_vesca	FvH4_2g20411 FvH4_2g29931 FvH4_3g14181 FvH4_4g00781 FvH4_4g12541 FvH4_5g22143 FvH4_7g24581
pyrus_communis	pycom04g03170 pycom05g18080 pycom12g05030 pycom13g18540
rosa_chinensis	RchiOBHm_Chr1g0313681 RchiOBHm_Chr1g0344501 RchiOBHm_Chr2g0157511
rosa_laevigata	RLG00000008144 RLG00000008360
rosa_multiflora	Rmu_sc0003765.1_g000035 Rmu_sc0004343.1_g000026 Rmu_sc0006087.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038680 Rroxscaffold_3G00247490 Rroxscaffold_4G00315330 Rroxscaffold_5G00355970 Rroxscaffold_7G00214090
rosa_rugosa	Rorug04G0109300 Rorug04G0109400
rosa_samantha	Rh1AG403200 Rh4AG167500 Rh4BG164600 Rh4CG179400 Rh4DG162300
rosa_wichuraiana	Rw4G013620 Rw4G013850 Rw4G013950 Rw6G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	340
AciI	CCGC	1 cut(s)	449
AcsI	RAATTY	1 cut(s)	565
AcuI	CTGAAG	1 cut(s)	533
AcyI	GRCGYC	1 cut(s)	341
AfaI	GTAC	1 cut(s)	509
AfiI	CCNNNNNNNGG	1 cut(s)	617
AgsI	TTSAA	6 cut(s)	24, 115, 140, 245, 425, 570
AjnI	CCWGG	3 cut(s)	336, 343, 372
AluBI	AGCT	8 cut(s)	20, 59, 74, 104, 128, 334, 382, 555
AluI	AGCT	8 cut(s)	20, 59, 74, 104, 128, 334, 382, 555
Alw26I	GTCTC	2 cut(s)	355, 601
AlwNI	CAGNNNCTG	1 cut(s)	391
ApeKI	GCWGC	3 cut(s)	382, 474, 555
ApoI	RAATTY	1 cut(s)	565
AspLEI	GCGC	1 cut(s)	343
AsuHPI	GGTGA	1 cut(s)	367
BanI	GGYRCC	1 cut(s)	340
BbvI	GCAGC	3 cut(s)	369, 486, 542
BccI	CCATC	1 cut(s)	269
BciT130I	CCWGG	3 cut(s)	338, 345, 374
BciVI	GTATCC	1 cut(s)	211
BcoDI	GTCTC	2 cut(s)	355, 601
BfaI	CTAG	1 cut(s)	71
BfmI	CTRYAG	2 cut(s)	129, 383
BfoI	RGCGCY	1 cut(s)	344
BfuI	GTATCC	1 cut(s)	211
BisI	GCNGC	4 cut(s)	383, 450, 475, 556
BlsI	GCNGC	4 cut(s)	384, 451, 476, 557
Bme1390I	CCNGG	3 cut(s)	338, 345, 374
BmiI	GGNNCC	2 cut(s)	157, 342
BmrFI	CCNGG	3 cut(s)	338, 345, 374
BpmI	CTGGAG	1 cut(s)	320
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	341
BsaI	GGTCTC	1 cut(s)	601
BsaXI	ACNNNNNCTCC	6 cut(s)	201, 231, 396, 426, 544, 574
Bsc4I	CCNNNNNNNGG	1 cut(s)	617
Bse1I	ACTGG	1 cut(s)	539
BseBI	CCWGG	3 cut(s)	338, 345, 374
BseLI	CCNNNNNNNGG	1 cut(s)	617
BseNI	ACTGG	1 cut(s)	539
BseRI	GAGGAG	3 cut(s)	296, 373, 498
BseXI	GCAGC	3 cut(s)	369, 486, 542
BshNI	GGYRCC	1 cut(s)	340
BslI	CCNNNNNNNGG	1 cut(s)	617
BsmAI	GTCTC	2 cut(s)	355, 601
Bso31I	GGTCTC	1 cut(s)	601
Bsp143I	GATC	3 cut(s)	183, 301, 623
BspACI	CCGC	1 cut(s)	449
BspLI	GGNNCC	2 cut(s)	157, 342
BspMAI	CTGCAG	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	340
BspTNI	GGTCTC	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	539
BssMI	GATC	3 cut(s)	183, 301, 623
BssNI	GRCGYC	1 cut(s)	341
Bst2UI	CCWGG	3 cut(s)	338, 345, 374
Bst4CI	ACNGT	3 cut(s)	133, 355, 633
BstACI	GRCGYC	1 cut(s)	341
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	60
BstENI	CCTNNNNNAGG	1 cut(s)	615
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	3 cut(s)	186, 304, 626
BstMAI	GTCTC	2 cut(s)	355, 601
BstMBI	GATC	3 cut(s)	183, 301, 623
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	3 cut(s)	338, 345, 374
BstSCI	CCNGG	3 cut(s)	336, 343, 372
BstSFI	CTRYAG	2 cut(s)	129, 383
BstV1I	GCAGC	3 cut(s)	369, 486, 542
BstXI	CCANNNNNNTGG	1 cut(s)	344
BsuI	GTATCC	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	295
CaiI	CAGNNNCTG	1 cut(s)	391
CfoI	GCGC	1 cut(s)	343
Csp6I	GTAC	1 cut(s)	508
CviAII	CATG	3 cut(s)	290, 399, 495
CviJI	RGCY	9 cut(s)	20, 59, 74, 104, 128, 334, 382, 452, 555
CviKI_1	RGCY	9 cut(s)	20, 59, 74, 104, 128, 334, 382, 452, 555
CviQI	GTAC	1 cut(s)	508
DdeI	CTNAG	1 cut(s)	60
DinI	GGCGCC	1 cut(s)	342
DpnI	GATC	3 cut(s)	185, 303, 625
DpnII	GATC	3 cut(s)	183, 301, 623
Eco31I	GGTCTC	1 cut(s)	601
Eco57I	CTGAAG	1 cut(s)	533
EcoNI	CCTNNNNNAGG	1 cut(s)	615
EcoRII	CCWGG	3 cut(s)	336, 343, 372
EgeI	GGCGCC	1 cut(s)	342
EheI	GGCGCC	1 cut(s)	342
FaeI	CATG	3 cut(s)	293, 402, 498
FaiI	YATR	8 cut(s)	167, 260, 291, 368, 400, 496, 585, 594
FatI	CATG	3 cut(s)	289, 398, 494
Fnu4HI	GCNGC	4 cut(s)	383, 450, 475, 556
Fsp4HI	GCNGC	4 cut(s)	383, 450, 475, 556
FspBI	CTAG	1 cut(s)	71
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	4 cut(s)	383, 450, 475, 556
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	1 cut(s)	344
HhaI	GCGC	1 cut(s)	343
Hin1I	GRCGYC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	293, 402, 498
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HincII	GTYRAC	1 cut(s)	46
HindII	GTYRAC	1 cut(s)	46
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	8 cut(s)	28, 149, 262, 388, 394, 421, 468, 491
HpaI	GTTAAC	1 cut(s)	46
HphI	GGTGA	1 cut(s)	367
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	3 cut(s)	183, 393, 434
Hpy188III	TCNNGA	4 cut(s)	92, 153, 425, 627
Hpy8I	GTNNAC	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	134, 139, 611
HpyCH4III	ACNGT	3 cut(s)	133, 355, 633
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
HpyF3I	CTNAG	1 cut(s)	60
Hsp92I	GRCGYC	1 cut(s)	341
Hsp92II	CATG	3 cut(s)	293, 402, 498
HspAI	GCGC	1 cut(s)	341
KasI	GGCGCC	1 cut(s)	340
KspAI	GTTAAC	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	183, 301, 623
LmnI	GCTCC	3 cut(s)	339, 379, 552
Lsp1109I	GCAGC	3 cut(s)	369, 486, 542
MaeI	CTAG	1 cut(s)	71
MaeIII	GTNAC	1 cut(s)	78
MalI	GATC	3 cut(s)	185, 303, 625
MboI	GATC	3 cut(s)	183, 301, 623
MboII	GAAGA	2 cut(s)	430, 633
MfeI	CAATTG	1 cut(s)	240
MluCI	AATT	2 cut(s)	240, 565
Mly113I	GGCGCC	1 cut(s)	341
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	6 cut(s)	34, 274, 315, 317, 351, 476
MseI	TTAA	2 cut(s)	45, 500
MspA1I	CMGCKG	1 cut(s)	449
MspR9I	CCNGG	3 cut(s)	338, 345, 374
MunI	CAATTG	1 cut(s)	240
MvaI	CCWGG	3 cut(s)	338, 345, 374
MwoI	GCNNNNNNNGC	1 cut(s)	340
NarI	GGCGCC	1 cut(s)	341
NdeII	GATC	3 cut(s)	183, 301, 623
NlaIII	CATG	3 cut(s)	293, 402, 498
NlaIV	GGNNCC	2 cut(s)	157, 342
PfeI	GAWTC	7 cut(s)	28, 149, 388, 394, 421, 468, 491
PkrI	GCNGC	4 cut(s)	384, 451, 476, 557
PleI	GAGTC	1 cut(s)	256
PluTI	GGCGCC	1 cut(s)	344
PpsI	GAGTC	1 cut(s)	256
Psp6I	CCWGG	3 cut(s)	336, 343, 372
PspGI	CCWGG	3 cut(s)	336, 343, 372
PspN4I	GGNNCC	2 cut(s)	157, 342
PstI	CTGCAG	1 cut(s)	387
PstNI	CAGNNNCTG	1 cut(s)	391
RsaI	GTAC	1 cut(s)	509
RsaNI	GTAC	1 cut(s)	508
SaqAI	TTAA	2 cut(s)	45, 500
SatI	GCNGC	4 cut(s)	383, 450, 475, 556
Sau3AI	GATC	3 cut(s)	183, 301, 623
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	3 cut(s)	338, 345, 374
SfcI	CTRYAG	2 cut(s)	129, 383
SfoI	GGCGCC	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	264
SmoI	CTYRAG	1 cut(s)	264
Sse9I	AATT	2 cut(s)	240, 565
SsiI	CCGC	1 cut(s)	449
SspDI	GGCGCC	1 cut(s)	340
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	3 cut(s)	336, 343, 372
TaaI	ACNGT	3 cut(s)	133, 355, 633
TaqI	TCGA	1 cut(s)	601
TasI	AATT	2 cut(s)	240, 565
TauI	GCSGC	1 cut(s)	452
TfiI	GAWTC	7 cut(s)	28, 149, 388, 394, 421, 468, 491
Tru1I	TTAA	2 cut(s)	45, 500
Tru9I	TTAA	2 cut(s)	45, 500
TseI	GCWGC	3 cut(s)	382, 474, 555
TspDTI	ATGAA	9 cut(s)	17, 134, 138, 278, 431, 483, 533, 609, 630
XagI	CCTNNNNNAGG	1 cut(s)	615
XapI	RAATTY	1 cut(s)	565
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.