Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003765.1

Orthogroup ID

OG0003287

Physical Location & Seq

Genomic Coordinates Reverse (-)

137154 .. 139193

Gene Structure 2040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003765.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

atggtctataactattgcagaagaagaaagagactgatgggagaagggtacaacaatccaaaggccaatcatgttagtgccaccagtgaaggaaaggaagatgcagtgacttttccactctcccagacagagtgtaatcaaatgctggggctgctaagccgtctccaagaagcagggaataaaacaaaggatgagagtcaattgctagagatgatgaacatcaacaaaccatcaacgaccaactttgtaggtaatgtaccaaaccttgaagatatctcaggtaaaatttgtgcactttatcgtcataacaaggatgtagtatggattttggatagcggggctagcgaccatattgacctacgttcggggaggatgattgggacgggagctgagagtgagggactatactgcctcaatatgcctcaggaaggaacgtgcaatgcggtgagcagcaaaaccggctatccaaatggacaaaagggctacaaagtctatcgtctgcatgatgcaaagattttggtctctagagacgtagtattctttgaaactgagtttccttttcagactagggtttcttctagtcttcactccacgacaccaccaaacatgttgtttactactcctactataccttctcatatcgaagatgatcttgtgcataccccaaatctctctgatcctaccatatcttctcctcaatcaccacatcactcggattctaccatatctccctcttctgcttcaccagatgatgagctgttttcttcttccactataccaccaccaaatccggatgttacttctccagatactatccctattcaggtctctacttcccaacctttgctccgacgttctacatgtgcaacaaagcctcctaccgctttgcaagacttccacattgagatggccttgccttcacgctctgtttccccatcttccatgagcaatgcagtgtcaggtacgccatatcctatctctgaggttatttcatatgacagactctctcccaagcatcgagcatttactgttaatctctcacacacgagaacctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

351

Amino Acids

38.54

Weight (kDa)

6.17

Isoelectric Point (pI)

64.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11591
fragaria_vesca	FvH4_2g20411 FvH4_2g29931 FvH4_3g14181 FvH4_4g00781 FvH4_4g12541 FvH4_5g22143 FvH4_7g24581
pyrus_communis	pycom04g03170 pycom05g18080 pycom12g05030 pycom13g18540
rosa_chinensis	RchiOBHm_Chr1g0313681 RchiOBHm_Chr1g0344501 RchiOBHm_Chr2g0157511
rosa_laevigata	RLG00000008144 RLG00000008360
rosa_multiflora	Rmu_sc0003765.1_g000035 Rmu_sc0004343.1_g000026 Rmu_sc0006087.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038680 Rroxscaffold_3G00247490 Rroxscaffold_4G00315330 Rroxscaffold_5G00355970 Rroxscaffold_7G00214090
rosa_rugosa	Rorug04G0109300 Rorug04G0109400
rosa_samantha	Rh1AG403200 Rh4AG167500 Rh4BG164600 Rh4CG179400 Rh4DG162300
rosa_wichuraiana	Rw4G013620 Rw4G013850 Rw4G013950 Rw6G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	790
AciI	CCGC	3 cut(s)	336, 443, 882
AclWI	GGATC	1 cut(s)	671
AcsI	RAATTY	1 cut(s)	285
AfaI	GTAC	3 cut(s)	50, 258, 964
AfiI	CCNNNNNNNGG	3 cut(s)	364, 428, 823
AflIII	ACRYGT	2 cut(s)	606, 860
AgsI	TTSAA	2 cut(s)	269, 545
AluBI	AGCT	2 cut(s)	389, 757
AluI	AGCT	2 cut(s)	389, 757
Alw21I	GWGCWC	1 cut(s)	295
Alw26I	GTCTC	5 cut(s)	25, 167, 522, 526, 832
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	671
Aor13HI	TCCGGA	1 cut(s)	790
AoxI	GGCC	2 cut(s)	63, 909
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	2 cut(s)	151, 450
ApoI	RAATTY	1 cut(s)	285
AsuHPI	GGTGA	3 cut(s)	457, 693, 735
AsuNHI	GCTAGC	1 cut(s)	341
AxyI	CCTNAGG	1 cut(s)	423
BaeGI	GKGCMC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	1045
BbsI	GAAGAC	1 cut(s)	575
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	138, 462
BccI	CCATC	4 cut(s)	31, 238, 901, 943
BceAI	ACGGC	1 cut(s)	144
BcoDI	GTCTC	5 cut(s)	25, 167, 522, 526, 832
BfaI	CTAG	5 cut(s)	206, 342, 525, 567, 579
BisI	GCNGC	2 cut(s)	152, 451
BlpI	GCTNAGC	1 cut(s)	155
BlsI	GCNGC	2 cut(s)	153, 452
BmsI	GCATC	3 cut(s)	91, 496, 1024
BmtI	GCTAGC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	575
BpmI	CTGGAG	1 cut(s)	789
Bpu1102I	GCTNAGC	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	218
BsaI	GGTCTC	2 cut(s)	526, 832
BsaWI	WCCGGW	1 cut(s)	790
BsaXI	ACNNNNNCTCC	6 cut(s)	712, 742, 831, 859, 861, 889
Bsc4I	CCNNNNNNNGG	3 cut(s)	364, 428, 823
Bse118I	RCCGGY	1 cut(s)	458
Bse1I	ACTGG	1 cut(s)	84
Bse21I	CCTNAGG	1 cut(s)	423
Bse3DI	GCAATG	2 cut(s)	445, 955
Bse8I	GATNNNNATC	1 cut(s)	218
BseAI	TCCGGA	1 cut(s)	790
BseGI	GGATG	4 cut(s)	196, 319, 378, 799
BseJI	GATNNNNATC	1 cut(s)	218
BseLI	CCNNNNNNNGG	3 cut(s)	364, 428, 823
BseMI	GCAATG	2 cut(s)	445, 955
BseMII	CTCAG	5 cut(s)	291, 381, 437, 540, 972
BseNI	ACTGG	1 cut(s)	84
BseRI	GAGGAG	1 cut(s)	684
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	2 cut(s)	138, 462
BseYI	CCCAGC	1 cut(s)	145
BshFI	GGCC	2 cut(s)	65, 911
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	2 cut(s)	459, 791
BslFI	GGGAC	2 cut(s)	394, 414
BslI	CCNNNNNNNGG	3 cut(s)	364, 428, 823
BsmAI	GTCTC	5 cut(s)	25, 167, 522, 526, 832
BsmBI	CGTCTC	2 cut(s)	167, 522
BsmFI	GGGAC	2 cut(s)	394, 414
BsnI	GGCC	2 cut(s)	65, 911
Bso31I	GGTCTC	2 cut(s)	526, 832
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp13I	TCCGGA	1 cut(s)	790
Bsp143I	GATC	2 cut(s)	649, 676
Bsp1720I	GCTNAGC	1 cut(s)	155
BspACI	CCGC	3 cut(s)	336, 443, 882
BspANI	GGCC	2 cut(s)	65, 911
BspCNI	CTCAG	5 cut(s)	290, 382, 436, 541, 973
BspEI	TCCGGA	1 cut(s)	790
BspOI	GCTAGC	1 cut(s)	345
BspPI	GGATC	1 cut(s)	671
BspTNI	GGTCTC	2 cut(s)	526, 832
BsrDI	GCAATG	2 cut(s)	445, 955
BsrFI	RCCGGY	1 cut(s)	458
BsrI	ACTGG	1 cut(s)	84
BssAI	RCCGGY	1 cut(s)	458
BssMI	GATC	2 cut(s)	649, 676
BssSI	CACGAG	1 cut(s)	1045
Bst2BI	CACGAG	1 cut(s)	1045
Bst4CI	ACNGT	1 cut(s)	1030
Bst6I	CTCTTC	1 cut(s)	739
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	6 cut(s)	155, 277, 390, 423, 549, 981
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstF5I	GGATG	4 cut(s)	196, 319, 378, 799
BstKTI	GATC	2 cut(s)	652, 679
BstMAI	GTCTC	5 cut(s)	25, 167, 522, 526, 832
BstMBI	GATC	2 cut(s)	649, 676
BstMWI	GCNNNNNNNGC	3 cut(s)	151, 342, 459
BstNSI	RCATGY	2 cut(s)	610, 864
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	138, 462
BstV2I	GAAGAC	1 cut(s)	575
Bsu36I	CCTNAGG	1 cut(s)	423
BsuRI	GGCC	2 cut(s)	65, 911
BtsCI	GGATG	4 cut(s)	196, 319, 378, 799
BtsI	GCAGTG	2 cut(s)	111, 960
BtsIMutI	CAGTG	3 cut(s)	91, 111, 960
Cac8I	GCNNGC	1 cut(s)	343
Cfr10I	RCCGGY	1 cut(s)	458
Csp6I	GTAC	3 cut(s)	49, 257, 963
CviAII	CATG	5 cut(s)	71, 503, 607, 861, 943
CviQI	GTAC	3 cut(s)	49, 257, 963
DdeI	CTNAG	6 cut(s)	155, 277, 390, 423, 549, 981
DpnI	GATC	2 cut(s)	651, 678
DpnII	GATC	2 cut(s)	649, 676
Eam1104I	CTCTTC	1 cut(s)	739
EarI	CTCTTC	1 cut(s)	739
Eco31I	GGTCTC	2 cut(s)	526, 832
Eco32I	GATATC	1 cut(s)	274
Eco81I	CCTNAGG	1 cut(s)	423
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoRV	GATATC	1 cut(s)	274
Esp3I	CGTCTC	2 cut(s)	167, 522
FaeI	CATG	5 cut(s)	74, 506, 610, 864, 946
FalI	AAGNNNNNCTT	2 cut(s)	636, 668
FaqI	GGGAC	2 cut(s)	394, 414
FatI	CATG	5 cut(s)	70, 502, 606, 860, 942
FauI	CCCGC	1 cut(s)	329
FauNDI	CATATG	1 cut(s)	994
Fnu4HI	GCNGC	2 cut(s)	152, 451
FokI	GGATG	4 cut(s)	203, 326, 385, 806
Fsp4HI	GCNGC	2 cut(s)	152, 451
FspBI	CTAG	5 cut(s)	206, 342, 525, 567, 579
GluI	GCNGC	2 cut(s)	152, 451
GsaI	CCCAGC	1 cut(s)	149
GsuI	CTGGAG	1 cut(s)	789
HaeIII	GGCC	2 cut(s)	65, 911
HapII	CCGG	2 cut(s)	459, 791
Hin1II	CATG	5 cut(s)	74, 506, 610, 864, 946
HinfI	GANTC	3 cut(s)	196, 716, 1002
HpaII	CCGG	2 cut(s)	459, 791
HphI	GGTGA	3 cut(s)	457, 693, 735
Hpy166II	GTNNAC	2 cut(s)	293, 615
Hpy188I	TCNGA	5 cut(s)	564, 676, 715, 851, 982
Hpy188III	TCNNGA	4 cut(s)	425, 525, 791, 806
Hpy8I	GTNNAC	2 cut(s)	293, 615
Hpy99I	CGWCG	1 cut(s)	855
HpyAV	CCTTC	5 cut(s)	38, 83, 422, 642, 927
HpyCH4III	ACNGT	1 cut(s)	1030
HpyCH4IV	ACGT	4 cut(s)	361, 434, 531, 853
HpyF10VI	GCNNNNNNNGC	3 cut(s)	151, 342, 459
HpyF3I	CTNAG	6 cut(s)	155, 277, 390, 423, 549, 981
HpySE526I	ACGT	4 cut(s)	361, 434, 531, 853
Hsp92II	CATG	5 cut(s)	74, 506, 610, 864, 946
Kpn2I	TCCGGA	1 cut(s)	790
Kzo9I	GATC	2 cut(s)	649, 676
LmnI	GCTCC	2 cut(s)	386, 852
Lsp1109I	GCAGC	2 cut(s)	138, 462
LweI	GCATC	3 cut(s)	91, 496, 1024
MaeI	CTAG	5 cut(s)	206, 342, 525, 567, 579
MaeII	ACGT	4 cut(s)	361, 434, 531, 853
MaeIII	GTNAC	2 cut(s)	106, 796
MalI	GATC	2 cut(s)	651, 678
MboI	GATC	2 cut(s)	649, 676
MfeI	CAATTG	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	2 cut(s)	200, 285
MlyI	GAGTC	2 cut(s)	205, 996
MmeI	TCCRAC	1 cut(s)	874
MnlI	CCTC	8 cut(s)	363, 391, 422, 432, 705, 742, 885, 976
MroI	TCCGGA	1 cut(s)	790
MseI	TTAA	1 cut(s)	1032
MslI	CAYNNNNRTG	2 cut(s)	75, 905
MspI	CCGG	2 cut(s)	459, 791
MunI	CAATTG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	151, 342, 459
NdeI	CATATG	1 cut(s)	994
NdeII	GATC	2 cut(s)	649, 676
NheI	GCTAGC	1 cut(s)	341
NlaIII	CATG	5 cut(s)	74, 506, 610, 864, 946
NmuCI	GTSAC	1 cut(s)	106
NspI	RCATGY	2 cut(s)	610, 864
PciI	ACATGT	2 cut(s)	606, 860
PfeI	GAWTC	1 cut(s)	716
PkrI	GCNGC	2 cut(s)	153, 452
PleI	GAGTC	2 cut(s)	204, 996
PpsI	GAGTC	2 cut(s)	204, 996
PscI	ACATGT	2 cut(s)	606, 860
PspFI	CCCAGC	1 cut(s)	145
RsaI	GTAC	3 cut(s)	50, 258, 964
RsaNI	GTAC	3 cut(s)	49, 257, 963
RseI	CAYNNNNRTG	2 cut(s)	75, 905
SaqAI	TTAA	1 cut(s)	1032
SatI	GCNGC	2 cut(s)	152, 451
Sau3AI	GATC	2 cut(s)	649, 676
SchI	GAGTC	2 cut(s)	205, 996
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	3 cut(s)	91, 496, 1024
SmiMI	CAYNNNNRTG	2 cut(s)	75, 905
Sse9I	AATT	2 cut(s)	200, 285
SsiI	CCGC	3 cut(s)	336, 443, 882
SspMI	CTAG	5 cut(s)	206, 342, 525, 567, 579
TaaI	ACNGT	1 cut(s)	1030
TaiI	ACGT	4 cut(s)	364, 437, 534, 856
TaqI	TCGA	2 cut(s)	642, 1018
TasI	AATT	2 cut(s)	200, 285
TfiI	GAWTC	1 cut(s)	716
Tru1I	TTAA	1 cut(s)	1032
Tru9I	TTAA	1 cut(s)	1032
TscAI	CASTG	3 cut(s)	91, 111, 960
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	2 cut(s)	151, 450
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	2 cut(s)	230, 981
TspRI	CASTG	3 cut(s)	91, 111, 960
VneI	GTGCAC	1 cut(s)	291
XagI	CCTNNNNNAGG	1 cut(s)	426
XapI	RAATTY	1 cut(s)	285
XbaI	TCTAGA	1 cut(s)	524
XceI	RCATGY	2 cut(s)	610, 864
XspI	CTAG	5 cut(s)	206, 342, 525, 567, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.