Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003287

Physical Location & Seq

Genomic Coordinates Reverse (-)

13490394 .. 13491101

Gene Structure 708 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22143.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGTCTTCTCCATATATTCAGCTTTTTGGTTCTCCTCCAGATCTTTCCCATTTGAAGGGTGTCTTTTGTTACAGTATTTCCAAGAATAAGTTGTGGTTGTCTCGTCATGTTGTTCATGATGAGTCTCTATTTCCTTTTCTTCATGTGGTCTCTCCCAAACCTGCTCCTATATCTTCCTCTTCCTTTAGCTTTTCTAAATCTTCTTCCATTCCTCTTTCACCAGAACAATTTGCTGCTCTTTATCCATCTTCTCCTGGCATCCATACTGCATCTGAAGGGGGGAATTTGAGAGGTGAAATAGGAGGTGAAAATGTTGGTGTGAGTAATGATACAGGAAGGAATAATGGAGATAATGCAATTTTTAGTGAAAATATTGCAGGAGGTCAAAACGCAGGTGTTGGTGGTAATGTTGGAGGAAGGGATAATGCAAATGATGTTGGTGATTTTTCTTTGAATCGTGATGTTAATGGTGGGAGTGTTGGTGAAAATATTGCTGGAAGTGAAAACATTGCTGAAGTTGCAAATGTTGTTGCAGGTGATAATGCTGCAGATAATAATACCGTTGGTGGTAATAATATTGATGCTGATGATATTTTTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

201

Amino Acids

20.63

Weight (kDa)

4.55

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11591
fragaria_vesca	FvH4_2g20411 FvH4_2g29931 FvH4_3g14181 FvH4_4g00781 FvH4_4g12541 FvH4_5g22143 FvH4_7g24581
pyrus_communis	pycom04g03170 pycom05g18080 pycom12g05030 pycom13g18540
rosa_chinensis	RchiOBHm_Chr1g0313681 RchiOBHm_Chr1g0344501 RchiOBHm_Chr2g0157511
rosa_laevigata	RLG00000008144 RLG00000008360
rosa_multiflora	Rmu_sc0003765.1_g000035 Rmu_sc0004343.1_g000026 Rmu_sc0006087.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038680 Rroxscaffold_3G00247490 Rroxscaffold_4G00315330 Rroxscaffold_5G00355970 Rroxscaffold_7G00214090
rosa_rugosa	Rorug04G0109300 Rorug04G0109400
rosa_samantha	Rh1AG403200 Rh4AG167500 Rh4BG164600 Rh4CG179400 Rh4DG162300
rosa_wichuraiana	Rw4G013620 Rw4G013850 Rw4G013950 Rw6G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	383, 524
Acc36I	ACCTGC	3 cut(s)	169, 383, 524
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	2 cut(s)	294, 534
AfiI	CCNNNNNNNGG	1 cut(s)	55
AgsI	TTSAA	2 cut(s)	55, 454
AjnI	CCWGG	1 cut(s)	253
AluBI	AGCT	2 cut(s)	22, 189
AluI	AGCT	2 cut(s)	22, 189
Alw26I	GTCTC	3 cut(s)	105, 129, 154
ApeKI	GCWGC	2 cut(s)	233, 545
ApoI	RAATTY	1 cut(s)	283
AsuHPI	GGTGA	6 cut(s)	210, 305, 317, 452, 494, 548
BbvI	GCAGC	2 cut(s)	220, 532
BccI	CCATC	1 cut(s)	253
BciT130I	CCWGG	1 cut(s)	255
BcoDI	GTCTC	3 cut(s)	105, 129, 154
BfmI	CTRYAG	2 cut(s)	546, 599
BfuAI	ACCTGC	3 cut(s)	169, 383, 524
BglII	AGATCT	1 cut(s)	40
BisI	GCNGC	2 cut(s)	234, 546
BlsI	GCNGC	2 cut(s)	235, 547
Bme1390I	CCNGG	1 cut(s)	255
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	3 cut(s)	267, 278, 571
BpmI	CTGGAG	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	154
BsaXI	ACNNNNNCTCC	2 cut(s)	466, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	507
BseBI	CCWGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	55
BseMI	GCAATG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	220, 532
BslI	CCNNNNNNNGG	1 cut(s)	55
BsmAI	GTCTC	3 cut(s)	105, 129, 154
Bso31I	GGTCTC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	115
BspMAI	CTGCAG	1 cut(s)	550
BspMI	ACCTGC	3 cut(s)	169, 383, 524
BspTNI	GGTCTC	1 cut(s)	154
BsrDI	GCAATG	1 cut(s)	507
BssMI	GATC	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	255
Bst4CI	ACNGT	2 cut(s)	74, 562
Bst6I	CTCTTC	1 cut(s)	184
BstF5I	GGATG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	43
BstMAI	GTCTC	3 cut(s)	105, 129, 154
BstMBI	GATC	1 cut(s)	40
BstMWI	GCNNNNNNNGC	1 cut(s)	518
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	2 cut(s)	546, 599
BstV1I	GCAGC	2 cut(s)	220, 532
BstX2I	RGATCY	1 cut(s)	40
BstYI	RGATCY	1 cut(s)	40
BtsCI	GGATG	1 cut(s)	258
BveI	ACCTGC	3 cut(s)	169, 383, 524
CciI	TCATGA	1 cut(s)	115
CviAII	CATG	3 cut(s)	107, 116, 143
CviJI	RGCY	2 cut(s)	22, 189
CviKI_1	RGCY	2 cut(s)	22, 189
DpnI	GATC	1 cut(s)	42
DpnII	GATC	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	154
Eco57I	CTGAAG	2 cut(s)	294, 534
EcoRII	CCWGG	1 cut(s)	253
FaeI	CATG	3 cut(s)	110, 119, 146
FaiI	YATR	7 cut(s)	13, 15, 108, 117, 144, 170, 264
FalI	AAGNNNNNCTT	2 cut(s)	47, 79
FatI	CATG	3 cut(s)	106, 115, 142
Fnu4HI	GCNGC	2 cut(s)	234, 546
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	2 cut(s)	234, 546
GluI	GCNGC	2 cut(s)	234, 546
GsuI	CTGGAG	1 cut(s)	21
Hin1II	CATG	3 cut(s)	110, 119, 146
HinfI	GANTC	2 cut(s)	122, 454
HphI	GGTGA	6 cut(s)	210, 305, 317, 452, 494, 548
Hpy188I	TCNGA	1 cut(s)	274
Hpy188III	TCNNGA	3 cut(s)	38, 116, 458
HpyAV	CCTTC	4 cut(s)	49, 269, 330, 411
HpyCH4III	ACNGT	2 cut(s)	74, 562
HpyCH4V	TGCA	7 cut(s)	269, 356, 377, 428, 521, 533, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	518
Hsp92II	CATG	3 cut(s)	110, 119, 146
Kzo9I	GATC	1 cut(s)	40
LmnI	GCTCC	1 cut(s)	169
Lsp1109I	GCAGC	2 cut(s)	220, 532
LweI	GCATC	3 cut(s)	267, 278, 571
MaeIII	GTNAC	1 cut(s)	68
MalI	GATC	1 cut(s)	42
MboI	GATC	1 cut(s)	40
MboII	GAAGA	6 cut(s)	131, 165, 171, 192, 195, 240
MflI	RGATCY	1 cut(s)	40
MluCI	AATT	3 cut(s)	227, 283, 357
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	391
MnlI	CCTC	7 cut(s)	45, 187, 222, 284, 296, 374, 407
MseI	TTAA	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	518
NdeII	GATC	1 cut(s)	40
NlaIII	CATG	3 cut(s)	110, 119, 146
PagI	TCATGA	1 cut(s)	115
PaqCI	CACCTGC	2 cut(s)	383, 524
PfeI	GAWTC	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	235, 547
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PstI	CTGCAG	1 cut(s)	550
PsuI	RGATCY	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	2 cut(s)	234, 546
Sau3AI	GATC	1 cut(s)	40
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	8 cut(s)	24, 163, 191, 295, 307, 385, 397, 538
SfaNI	GCATC	3 cut(s)	267, 278, 571
SfcI	CTRYAG	2 cut(s)	546, 599
Sse9I	AATT	3 cut(s)	227, 283, 357
SspI	AATATT	3 cut(s)	373, 490, 577
StyD4I	CCNGG	1 cut(s)	253
TaaI	ACNGT	2 cut(s)	74, 562
TasI	AATT	3 cut(s)	227, 283, 357
TfiI	GAWTC	1 cut(s)	454
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TseI	GCWGC	2 cut(s)	233, 545
TspDTI	ATGAA	2 cut(s)	104, 131
XapI	RAATTY	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.