Rroxscaffold_4G00315330
RLK Family

cysteine-rich RLK (RECEPTOR-like protein kinase) 8

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0003287
Physical Location & Seq
Reverse (-)
39586256 .. 39587913
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315330.1

Sequence Viewer

Length: 369 bp
ATGTCTTCTCCTTATATTGAGTTGTTTGGTACTGCACCTGATTTGTCTTTTCTCAAGATTTTTGGGACTGCTTGTTATCCCTACCTTCGACCTTATACTCATGATAAACTTGAGCCTCGCACTTCTCTCTGTGTGTTTCTTGGCTATGCTTTGGGGTATAAAGGCGTGTTTTGTTACAACATTGAGCATAATAAGCTATGGATGTGTAGGCATGTTGTCCATGATGAAACCATTTTCCCATATCATATCTTTGCTTCTTCCTCATCCGCCACAAACTCACGAGTTCCTTCTTCCTCCTCATATCCGTTTTCTATGTCTAGTCCTTCTTCCTCTCGTTGCTTCTCCATCTTCATCCTTGTTGCCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

122

Amino Acids

13.85

Weight (kDa)

8.29

Isoelectric Point (pI)

80.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SH3_retrovirus PF25597 24 - 82 1.1e-15 Retroviral polymerase SH3-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 267
AfaI GTAC 1 cut(s) 31
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
BauI CACGAG 1 cut(s) 279
BccI CCATC 1 cut(s) 353
BfaI CTAG 1 cut(s) 318
BpuEI CTTGAG 2 cut(s) 38, 131
BseGI GGATG 3 cut(s) 207, 263, 351
BseRI GAGGAG 1 cut(s) 286
BsgI GTGCAG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 79
BsmFI GGGAC 1 cut(s) 79
BspACI CCGC 1 cut(s) 267
BspHI TCATGA 1 cut(s) 100
BssSI CACGAG 1 cut(s) 279
Bst2BI CACGAG 1 cut(s) 279
BstF5I GGATG 3 cut(s) 207, 263, 351
BstMWI GCNNNNNNNGC 1 cut(s) 193
BstNSI RCATGY 1 cut(s) 215
BtsCI GGATG 3 cut(s) 207, 263, 351
CciI TCATGA 1 cut(s) 100
Csp6I GTAC 1 cut(s) 30
CviAII CATG 3 cut(s) 101, 212, 221
CviJI RGCY 3 cut(s) 115, 144, 196
CviKI_1 RGCY 3 cut(s) 115, 144, 196
CviQI GTAC 1 cut(s) 30
EciI GGCGGA 1 cut(s) 256
FaeI CATG 3 cut(s) 104, 215, 224
FaqI GGGAC 1 cut(s) 79
FatI CATG 3 cut(s) 100, 211, 220
FokI GGATG 3 cut(s) 214, 250, 338
FspBI CTAG 1 cut(s) 318
Hin1II CATG 3 cut(s) 104, 215, 224
Hpy188III TCNNGA 3 cut(s) 55, 101, 279
HpyAV CCTTC 3 cut(s) 95, 297, 333
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 1 cut(s) 193
Hsp92II CATG 3 cut(s) 104, 215, 224
LpnPI CCDG 1 cut(s) 51
MaeI CTAG 1 cut(s) 318
MaeIII GTNAC 1 cut(s) 173
MboII GAAGA 4 cut(s) 249, 282, 318, 340
MnlI CCTC 5 cut(s) 126, 271, 304, 307, 340
MwoI GCNNNNNNNGC 1 cut(s) 193
NlaIII CATG 3 cut(s) 104, 215, 224
NspI RCATGY 1 cut(s) 215
PagI TCATGA 1 cut(s) 100
RsaI GTAC 1 cut(s) 31
RsaNI GTAC 1 cut(s) 30
SetI ASST 4 cut(s) 40, 87, 94, 198
SmlI CTYRAG 2 cut(s) 53, 110
SmoI CTYRAG 2 cut(s) 53, 110
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 318
TaqI TCGA 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 240, 340
TspGWI ACGGA 1 cut(s) 294
XceI RCATGY 1 cut(s) 215
XspI CTAG 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.