Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003287

Physical Location & Seq

Genomic Coordinates Forward (+)

666103 .. 667930

Gene Structure 1828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g00781.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGTTACCACTTTCTTCAACAAGCTCAAAGCTTTGTGGGACGAGAGGGATGCTCTATGTGACCTAACTTCTTGTGATTGTGAAGAAGGAATCAAGATAAGTGACTATGTTAAGAATCAGAAGACAATGCAATTTCTCATGGGGTTGAATGAGAATTTTGCAACGATGCGAGGAACTATAGTGGTCATCGATCCGCTGCCGTCATTGAACACTGCATTTGCTATGGCCTTGTGCACCGAAAAGCAAGCAGAAGCATTTGCTGGCACCAAGCCGGTATCTCAACCTGAAGGAGTCGCATTCTTTGTGCGAAATACCAACCAGGAAAAGGAGCATGTCGAGAATGAGCAGCGATGCGCCAATTGCAACAAGAATAATCATCTTACTAAGAACTGTAAGGCGCACTTAAGATGTAGCTTCTGTGGATTCAAAGGACATGTAGTCGAAACATGTCGGAAGAAGAAAGCAGCAATGGAGGGACTTCAAGCTTATGCTAGAGGCAACAATGCAGCAACGTTTGATGGAGGCAGTGCTAGCAACTTCCCATTCTCAAAGGAAGATTGTCAACAGATCATGGCGGTGTTGAACAAAGACAAAACAGCGTCTGCGAACCATGTTGGTAATACCTCATCCTATGAAAACCTCTCAGGTAAAGCCTTTTGTTTTCGTAATCATGAGAAGTCTAGTGTGTGGATATTGGACAGCGGTGCCACTGATCATATGGTTTGTAACCCTACTCTTCTTACCCATATCAAACCAACACAAAATCGTTTTGTCAAACTTCCTGATGGTAATACAGCTAGGGTCAGTCATATAGGCACAATGGTCTTCTCATCCCAGTTCGTGTTACAAAATGTGTTATATGTCCCAATGTTCTATCTCAATCTCATATCTGTTAGTAAACTAGCGCATGATTCGTTTTGTGTCACCATCTTTCTCAAACAAATTTGTTTTGTACAGGACCTTCGCTCCGGGAAGATGATTGGGACGGGCCATGAGAGGGACAGACTATACTGCCTCGACCAAACCAAGGAAGGAACATGTAATGATGTTAGCAACATTTCAAGTGATCTATGGCATCAACGCCTCGGTCACCCTTCCAGTAGAGTCTCTTCTTTATTTCCTTTTCTTTCAAGTAAAACTTGTGATTCAAACAAGTGTTTAGTATGTCCTTTGGCTAAACAAACCAGGAATCATTTTCCATTAAGTTCTATTTCAAGTGAGTCACCCTTTGTTTTAATTCATGTTGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_3 Retrotrans_gag

Protein Analysis

418

Amino Acids

46.49

Weight (kDa)

8.42

Isoelectric Point (pI)

38.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pol_BBD	PF22936	230 - 303	4.4e-17	Pol polyprotein, beta-barrel domain
gag_pre-integrs	PF13976	335 - 394	2e-07	GAG-pre-integrase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11591
fragaria_vesca	FvH4_2g20411 FvH4_2g29931 FvH4_3g14181 FvH4_4g00781 FvH4_4g12541 FvH4_5g22143 FvH4_7g24581
pyrus_communis	pycom04g03170 pycom05g18080 pycom12g05030 pycom13g18540
rosa_chinensis	RchiOBHm_Chr1g0313681 RchiOBHm_Chr1g0344501 RchiOBHm_Chr2g0157511
rosa_laevigata	RLG00000008144 RLG00000008360
rosa_multiflora	Rmu_sc0003765.1_g000035 Rmu_sc0004343.1_g000026 Rmu_sc0006087.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038680 Rroxscaffold_3G00247490 Rroxscaffold_4G00315330 Rroxscaffold_5G00355970 Rroxscaffold_7G00214090
rosa_rugosa	Rorug04G0109300 Rorug04G0109400
rosa_samantha	Rh1AG403200 Rh4AG167500 Rh4BG164600 Rh4CG179400 Rh4DG162300
rosa_wichuraiana	Rw4G013620 Rw4G013850 Rw4G013950 Rw6G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	263, 704
AciI	CCGC	3 cut(s)	194, 575, 702
AclI	AACGTT	1 cut(s)	512
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	2 cut(s)	154, 942
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	1 cut(s)	954
AfiI	CCNNNNNNNGG	3 cut(s)	325, 997, 1027
AflII	CTTAAG	1 cut(s)	403
AflIII	ACRYGT	3 cut(s)	433, 446, 1037
AhdI	GACNNNNNGTC	1 cut(s)	437
AjnI	CCWGG	2 cut(s)	318, 1184
AluBI	AGCT	5 cut(s)	25, 32, 414, 485, 797
AluI	AGCT	5 cut(s)	25, 32, 414, 485, 797
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	1111
Alw44I	GTGCAC	1 cut(s)	232
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	602
AoxI	GGCC	2 cut(s)	225, 988
ApaLI	GTGCAC	1 cut(s)	232
ApeKI	GCWGC	4 cut(s)	196, 346, 464, 506
ApoI	RAATTY	2 cut(s)	154, 942
AspLEI	GCGC	3 cut(s)	356, 400, 907
AspS9I	GGNCC	2 cut(s)	958, 988
AsuC2I	CCSGG	1 cut(s)	970
AsuHPI	GGTGA	3 cut(s)	916, 1082, 1215
AsuNHI	GCTAGC	1 cut(s)	530
AvaII	GGWCC	1 cut(s)	958
BaeGI	GKGCMC	1 cut(s)	236
BanI	GGYRCC	2 cut(s)	263, 704
BarI	GAAGNNNNNNTAC	4 cut(s)	945, 977, 1093, 1125
BbsI	GAAGAC	2 cut(s)	128, 817
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	4 cut(s)	183, 358, 476, 518
BccI	CCATC	3 cut(s)	512, 779, 935
BceAI	ACGGC	1 cut(s)	184
BcgI	CGANNNNNNTGC	2 cut(s)	32, 66
BciT130I	CCWGG	2 cut(s)	320, 1186
BclI	TGATCA	1 cut(s)	712
BcnI	CCSGG	1 cut(s)	970
BcoDI	GTCTC	1 cut(s)	1111
BfaI	CTAG	5 cut(s)	492, 531, 681, 798, 902
BfmI	CTRYAG	1 cut(s)	177
BfrI	CTTAAG	1 cut(s)	403
BisI	GCNGC	4 cut(s)	197, 347, 465, 507
BlsI	GCNGC	4 cut(s)	198, 348, 466, 508
Bme1390I	CCNGG	3 cut(s)	320, 970, 1186
Bme18I	GGWCC	1 cut(s)	958
BmeRI	GACNNNNNGTC	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	958, 988
BmiI	GGNNCC	2 cut(s)	265, 706
BmrFI	CCNGG	3 cut(s)	320, 970, 1186
BmrI	ACTGGG	1 cut(s)	829
BmsI	GCATC	4 cut(s)	40, 156, 341, 1084
BmtI	GCTAGC	1 cut(s)	534
BmuI	ACTGGG	1 cut(s)	829
BpiI	GAAGAC	2 cut(s)	128, 817
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpuMI	CCSGG	1 cut(s)	970
Bsa29I	ATCGAT	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	1026, 1084
BsaXI	ACNNNNNCTCC	2 cut(s)	950, 980
Bsc4I	CCNNNNNNNGG	3 cut(s)	325, 997, 1027
Bse118I	RCCGGY	1 cut(s)	271
Bse1I	ACTGG	2 cut(s)	835, 1098
Bse3DI	GCAATG	1 cut(s)	474
BseBI	CCWGG	2 cut(s)	320, 1186
BseCI	ATCGAT	1 cut(s)	189
BseDI	CCNNGG	2 cut(s)	1026, 1084
BseGI	GGATG	3 cut(s)	55, 626, 830
BseLI	CCNNNNNNNGG	3 cut(s)	325, 997, 1027
BseMI	GCAATG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	657
BseNI	ACTGG	2 cut(s)	835, 1098
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	4 cut(s)	183, 358, 476, 518
BshFI	GGCC	2 cut(s)	227, 990
BshNI	GGYRCC	2 cut(s)	263, 704
BshVI	ATCGAT	1 cut(s)	189
BsiHKAI	GWGCWC	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	272, 969
BslFI	GGGAC	5 cut(s)	53, 489, 848, 997, 1013
BslI	CCNNNNNNNGG	3 cut(s)	325, 997, 1027
BsmAI	GTCTC	1 cut(s)	1111
BsmFI	GGGAC	5 cut(s)	53, 489, 848, 997, 1013
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	2 cut(s)	227, 990
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp1407I	TGTACA	1 cut(s)	952
Bsp143I	GATC	4 cut(s)	190, 567, 712, 1066
BspACI	CCGC	3 cut(s)	194, 575, 702
BspANI	GGCC	2 cut(s)	227, 990
BspCNI	CTCAG	1 cut(s)	656
BspDI	ATCGAT	1 cut(s)	189
BspHI	TCATGA	1 cut(s)	670
BspLI	GGNNCC	2 cut(s)	265, 706
BspOI	GCTAGC	1 cut(s)	534
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	2 cut(s)	263, 704
BspTI	CTTAAG	1 cut(s)	403
BsrDI	GCAATG	1 cut(s)	474
BsrFI	RCCGGY	1 cut(s)	271
BsrGI	TGTACA	1 cut(s)	952
BsrI	ACTGG	2 cut(s)	835, 1098
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	2 cut(s)	1026, 1084
BssMI	GATC	4 cut(s)	190, 567, 712, 1066
BssT1I	CCWWGG	1 cut(s)	1026
Bst2UI	CCWGG	2 cut(s)	320, 1186
Bst4CI	ACNGT	1 cut(s)	392
Bst6I	CTCTTC	2 cut(s)	741, 1114
BstAFI	CTTAAG	1 cut(s)	403
BstAUI	TGTACA	1 cut(s)	952
BstC8I	GCNNGC	3 cut(s)	246, 262, 532
BstDEI	CTNAG	2 cut(s)	384, 643
BstEII	GGTNACC	2 cut(s)	4, 1088
BstF5I	GGATG	3 cut(s)	55, 626, 830
BstHHI	GCGC	3 cut(s)	356, 400, 907
BstKTI	GATC	4 cut(s)	193, 570, 715, 1069
BstMAI	GTCTC	1 cut(s)	1111
BstMBI	GATC	4 cut(s)	190, 567, 712, 1066
BstMWI	GCNNNNNNNGC	2 cut(s)	360, 531
BstNI	CCWGG	2 cut(s)	320, 1186
BstNSI	RCATGY	4 cut(s)	335, 437, 450, 1041
BstPI	GGTNACC	2 cut(s)	4, 1088
BstSCI	CCNGG	3 cut(s)	318, 968, 1184
BstSFI	CTRYAG	1 cut(s)	177
BstSLI	GKGCMC	1 cut(s)	236
BstV1I	GCAGC	4 cut(s)	183, 358, 476, 518
BstV2I	GAAGAC	2 cut(s)	128, 817
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	227, 990
BsuTUI	ATCGAT	1 cut(s)	189
BtgZI	GCGATG	1 cut(s)	364
BtsCI	GGATG	3 cut(s)	55, 626, 830
BtsI	GCAGTG	2 cut(s)	210, 532
BtsIMutI	CAGTG	3 cut(s)	210, 532, 708
Cac8I	GCNNGC	3 cut(s)	246, 262, 532
CaiI	CAGNNNCTG	1 cut(s)	602
CciI	TCATGA	1 cut(s)	670
CfoI	GCGC	3 cut(s)	356, 400, 907
Cfr10I	RCCGGY	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	958, 988
ClaI	ATCGAT	1 cut(s)	189
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	1 cut(s)	953
CviQI	GTAC	1 cut(s)	953
DdeI	CTNAG	2 cut(s)	384, 643
DpnI	GATC	4 cut(s)	192, 569, 714, 1068
DpnII	GATC	4 cut(s)	190, 567, 712, 1066
DriI	GACNNNNNGTC	1 cut(s)	437
Eam1104I	CTCTTC	2 cut(s)	741, 1114
Eam1105I	GACNNNNNGTC	1 cut(s)	437
EarI	CTCTTC	2 cut(s)	741, 1114
Eco130I	CCWWGG	1 cut(s)	1026
Eco47I	GGWCC	1 cut(s)	958
Eco57I	CTGAAG	1 cut(s)	306
Eco91I	GGTNACC	2 cut(s)	4, 1088
EcoO109I	RGGNCCY	1 cut(s)	958
EcoO65I	GGTNACC	2 cut(s)	4, 1088
EcoRII	CCWGG	2 cut(s)	318, 1184
EcoT14I	CCWWGG	1 cut(s)	1026
ErhI	CCWWGG	1 cut(s)	1026
FalI	AAGNNNNNCTT	4 cut(s)	386, 418, 1123, 1155
FaqI	GGGAC	5 cut(s)	53, 489, 848, 997, 1013
FauNDI	CATATG	1 cut(s)	717
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	4 cut(s)	197, 347, 465, 507
FokI	GGATG	3 cut(s)	62, 613, 817
Fsp4HI	GCNGC	4 cut(s)	197, 347, 465, 507
FspBI	CTAG	5 cut(s)	492, 531, 681, 798, 902
GlaI	GCGC	3 cut(s)	355, 399, 906
GluI	GCNGC	4 cut(s)	197, 347, 465, 507
HaeIII	GGCC	2 cut(s)	227, 990
HapII	CCGG	2 cut(s)	272, 969
HgaI	GACGC	1 cut(s)	588
HhaI	GCGC	3 cut(s)	356, 400, 907
Hin6I	GCGC	3 cut(s)	354, 398, 905
HinP1I	GCGC	3 cut(s)	354, 398, 905
HincII	GTYRAC	2 cut(s)	563, 1246
HindII	GTYRAC	2 cut(s)	563, 1246
HindIII	AAGCTT	2 cut(s)	30, 483
HinfI	GANTC	9 cut(s)	90, 115, 291, 423, 911, 1104, 1145, 1189, 1220
HpaII	CCGG	2 cut(s)	272, 969
HphI	GGTGA	3 cut(s)	916, 1082, 1215
Hpy166II	GTNNAC	4 cut(s)	234, 563, 899, 1246
Hpy188I	TCNGA	2 cut(s)	120, 453
Hpy188III	TCNNGA	4 cut(s)	94, 337, 671, 782
Hpy8I	GTNNAC	4 cut(s)	234, 563, 899, 1246
HpyAV	CCTTC	5 cut(s)	80, 281, 971, 1025, 1104
HpyCH4III	ACNGT	1 cut(s)	392
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	6 cut(s)	130, 161, 215, 234, 363, 506
HpyF10VI	GCNNNNNNNGC	2 cut(s)	360, 531
HpyF3I	CTNAG	2 cut(s)	384, 643
HpySE526I	ACGT	1 cut(s)	512
HspAI	GCGC	3 cut(s)	354, 398, 905
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	4 cut(s)	190, 567, 712, 1066
LmnI	GCTCC	2 cut(s)	328, 971
Lsp1109I	GCAGC	4 cut(s)	183, 358, 476, 518
LweI	GCATC	4 cut(s)	40, 156, 341, 1084
MaeI	CTAG	5 cut(s)	492, 531, 681, 798, 902
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	8 cut(s)	4, 59, 101, 725, 843, 922, 1088, 1221
MalI	GATC	4 cut(s)	192, 569, 714, 1068
MboI	GATC	4 cut(s)	190, 567, 712, 1066
MfeI	CAATTG	1 cut(s)	358
MhlI	GDGCHC	1 cut(s)	236
MluCI	AATT	5 cut(s)	131, 154, 358, 942, 1236
MlyI	GAGTC	3 cut(s)	300, 1113, 1229
MmeI	TCCRAC	1 cut(s)	431
MseI	TTAA	4 cut(s)	111, 404, 1202, 1235
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	2 cut(s)	196, 702
MspCI	CTTAAG	1 cut(s)	403
MspI	CCGG	2 cut(s)	272, 969
MspR9I	CCNGG	3 cut(s)	320, 970, 1186
MunI	CAATTG	1 cut(s)	358
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	2 cut(s)	320, 1186
MwoI	GCNNNNNNNGC	2 cut(s)	360, 531
NciI	CCSGG	1 cut(s)	970
NdeI	CATATG	1 cut(s)	717
NdeII	GATC	4 cut(s)	190, 567, 712, 1066
NheI	GCTAGC	1 cut(s)	530
NlaIV	GGNNCC	2 cut(s)	265, 706
NmuCI	GTSAC	5 cut(s)	59, 101, 922, 1088, 1221
NspI	RCATGY	4 cut(s)	335, 437, 450, 1041
PagI	TCATGA	1 cut(s)	670
PciI	ACATGT	3 cut(s)	433, 446, 1037
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	6 cut(s)	90, 115, 423, 911, 1145, 1189
PfoI	TCCNGGA	1 cut(s)	968
PkrI	GCNGC	4 cut(s)	198, 348, 466, 508
PleI	GAGTC	3 cut(s)	299, 1112, 1228
PpsI	GAGTC	3 cut(s)	299, 1112, 1228
PpuMI	RGGWCCY	1 cut(s)	958
PscI	ACATGT	3 cut(s)	433, 446, 1037
Psp1406I	AACGTT	1 cut(s)	512
Psp5II	RGGWCCY	1 cut(s)	958
Psp6I	CCWGG	2 cut(s)	318, 1184
PspEI	GGTNACC	2 cut(s)	4, 1088
PspGI	CCWGG	2 cut(s)	318, 1184
PspN4I	GGNNCC	2 cut(s)	265, 706
PspPI	GGNCC	2 cut(s)	958, 988
PspPPI	RGGWCCY	1 cut(s)	958
PstNI	CAGNNNCTG	1 cut(s)	602
RsaI	GTAC	1 cut(s)	954
RsaNI	GTAC	1 cut(s)	953
RseI	CAYNNNNRTG	1 cut(s)	575
SaqAI	TTAA	4 cut(s)	111, 404, 1202, 1235
SatI	GCNGC	4 cut(s)	197, 347, 465, 507
Sau3AI	GATC	4 cut(s)	190, 567, 712, 1066
Sau96I	GGNCC	2 cut(s)	958, 988
SchI	GAGTC	3 cut(s)	300, 1113, 1229
ScrFI	CCNGG	3 cut(s)	320, 970, 1186
SduI	GDGCHC	1 cut(s)	236
SfaNI	GCATC	4 cut(s)	40, 156, 341, 1084
SfcI	CTRYAG	1 cut(s)	177
SinI	GGWCC	1 cut(s)	958
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	403
SmoI	CTYRAG	1 cut(s)	403
Sse9I	AATT	5 cut(s)	131, 154, 358, 942, 1236
SsiI	CCGC	3 cut(s)	194, 575, 702
SspMI	CTAG	5 cut(s)	492, 531, 681, 798, 902
StyD4I	CCNGG	3 cut(s)	318, 968, 1184
StyI	CCWWGG	1 cut(s)	1026
TaaI	ACNGT	1 cut(s)	392
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	4 cut(s)	189, 336, 441, 1017
TaqII	GACCGA	1 cut(s)	1076
TasI	AATT	5 cut(s)	131, 154, 358, 942, 1236
TatI	WGTACW	1 cut(s)	952
TfiI	GAWTC	6 cut(s)	90, 115, 423, 911, 1145, 1189
Tru1I	TTAA	4 cut(s)	111, 404, 1202, 1235
Tru9I	TTAA	4 cut(s)	111, 404, 1202, 1235
TscAI	CASTG	3 cut(s)	217, 532, 715
TseFI	GTSAC	5 cut(s)	59, 101, 922, 1088, 1221
TseI	GCWGC	4 cut(s)	196, 346, 464, 506
Tsp45I	GTSAC	5 cut(s)	59, 101, 922, 1088, 1221
TspDTI	ATGAA	2 cut(s)	648, 1229
TspRI	CASTG	3 cut(s)	217, 532, 715
Vha464I	CTTAAG	1 cut(s)	403
VneI	GTGCAC	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	958
XapI	RAATTY	2 cut(s)	154, 942
XceI	RCATGY	4 cut(s)	335, 437, 450, 1041
XcmI	CCANNNNNNNNNTGG	1 cut(s)	715
XspI	CTAG	5 cut(s)	492, 531, 681, 798, 902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.