RchiOBHm_Chr2g0157511

NB-ARC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003287
Physical Location & Seq
Reverse (-)
73881497 .. 73881904
408 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ52624

Sequence Viewer

Length: 309 bp
ATGTCTAACCATAGGATTTCTGGGTCACATGCACTTGTTGTTGATCAATTATCTACTGTATCTATTCCTAGTAACGTGCAGGATGCATTGGCGGATCCAAAATGGACGAAGGCGATGAATGAAGAATTGGAAGCTCTTCAAAAGAATGCAACATGGGAGCTAGTACCTATGCCGGTTGGAAAGAAGACTATGGAACTATTAATAGATACAAGGCGAGGTTGGTTGCCAAAGGATATACACAACGCTATGGGATTGATTATGAGGAGACTTTTGCACCTGTGGCAAAGATCAATACTGTCCGGATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NB-ARC RVT_2 TIR

Protein Analysis

102

Amino Acids

11.58

Weight (kDa)

9.3

Isoelectric Point (pI)

49.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 299
AciI CCGC 1 cut(s) 92
AclWI GGATC 2 cut(s) 89, 102
AfaI GTAC 1 cut(s) 165
AgsI TTSAA 1 cut(s) 140
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 2 cut(s) 134, 160
AluI AGCT 2 cut(s) 134, 160
Alw26I GTCTC 1 cut(s) 259
AlwI GGATC 2 cut(s) 89, 102
Aor13HI TCCGGA 1 cut(s) 299
AseI ATTAAT 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 135
BamHI GGATCC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 191
BclI TGATCA 1 cut(s) 43
BcoDI GTCTC 1 cut(s) 259
BfaI CTAG 2 cut(s) 69, 161
BmiI GGNNCC 1 cut(s) 96
BmsI GCATC 1 cut(s) 73
BpiI GAAGAC 1 cut(s) 191
BsaWI WCCGGW 1 cut(s) 299
Bse118I RCCGGY 1 cut(s) 172
BseAI TCCGGA 1 cut(s) 299
BseGI GGATG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 277
BsgI GTGCAG 1 cut(s) 98
BsiSI CCGG 2 cut(s) 173, 300
BsmAI GTCTC 1 cut(s) 259
BsmI GAATGC 1 cut(s) 151
Bsp13I TCCGGA 1 cut(s) 299
Bsp143I GATC 3 cut(s) 43, 94, 287
BspACI CCGC 1 cut(s) 92
BspEI TCCGGA 1 cut(s) 299
BspLI GGNNCC 1 cut(s) 96
BspPI GGATC 2 cut(s) 89, 102
BspQI GCTCTTC 1 cut(s) 141
BsrFI RCCGGY 1 cut(s) 172
BssAI RCCGGY 1 cut(s) 172
BssMI GATC 3 cut(s) 43, 94, 287
Bst4CI ACNGT 2 cut(s) 58, 297
Bst6I CTCTTC 1 cut(s) 141
BstF5I GGATG 1 cut(s) 88
BstKTI GATC 3 cut(s) 46, 97, 290
BstMAI GTCTC 1 cut(s) 259
BstMBI GATC 3 cut(s) 43, 94, 287
BstMWI GCNNNNNNNGC 1 cut(s) 280
BstNSI RCATGY 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 191
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BtgZI GCGATG 1 cut(s) 128
BtsCI GGATG 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 172
Csp6I GTAC 1 cut(s) 164
CviAII CATG 2 cut(s) 29, 153
CviJI RGCY 2 cut(s) 134, 160
CviKI_1 RGCY 2 cut(s) 134, 160
CviQI GTAC 1 cut(s) 164
DpnI GATC 3 cut(s) 45, 96, 289
DpnII GATC 3 cut(s) 43, 94, 287
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 107
EcoT22I ATGCAT 1 cut(s) 88
FaeI CATG 2 cut(s) 32, 156
FaiI YATR 8 cut(s) 12, 30, 154, 170, 191, 236, 248, 260
FatI CATG 2 cut(s) 28, 152
FbaI TGATCA 1 cut(s) 43
FokI GGATG 1 cut(s) 95
FspBI CTAG 2 cut(s) 69, 161
HapII CCGG 2 cut(s) 173, 300
Hin1II CATG 2 cut(s) 32, 156
HinfI GANTC 1 cut(s) 303
HpaII CCGG 2 cut(s) 173, 300
Hpy188III TCNNGA 1 cut(s) 300
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 2 cut(s) 58, 297
HpyCH4IV ACGT 1 cut(s) 75
HpyCH4V TGCA 5 cut(s) 32, 79, 86, 149, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 280
HpySE526I ACGT 1 cut(s) 75
Hsp92II CATG 2 cut(s) 32, 156
Kpn2I TCCGGA 1 cut(s) 299
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 3 cut(s) 43, 94, 287
LguI GCTCTTC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 4 cut(s) 6, 65, 186, 290
LweI GCATC 1 cut(s) 73
MaeI CTAG 2 cut(s) 69, 161
MaeII ACGT 1 cut(s) 75
MaeIII GTNAC 2 cut(s) 24, 71
MalI GATC 3 cut(s) 45, 96, 289
MboI GATC 3 cut(s) 43, 94, 287
MboII GAAGA 3 cut(s) 128, 134, 196
MflI RGATCY 1 cut(s) 94
MluCI AATT 2 cut(s) 47, 125
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 2 cut(s) 209, 255
Mph1103I ATGCAT 1 cut(s) 88
MroI TCCGGA 1 cut(s) 299
MroXI GAANNNNTTC 1 cut(s) 135
MseI TTAA 1 cut(s) 200
MspI CCGG 2 cut(s) 173, 300
Mva1269I GAATGC 1 cut(s) 151
MwoI GCNNNNNNNGC 1 cut(s) 280
NdeII GATC 3 cut(s) 43, 94, 287
NlaIII CATG 2 cut(s) 32, 156
NlaIV GGNNCC 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 24
NsiI ATGCAT 1 cut(s) 88
NspI RCATGY 1 cut(s) 32
PciSI GCTCTTC 1 cut(s) 141
PctI GAATGC 1 cut(s) 151
PdmI GAANNNNTTC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 303
PshBI ATTAAT 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 96
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SapI GCTCTTC 1 cut(s) 141
SaqAI TTAA 1 cut(s) 200
Sau3AI GATC 3 cut(s) 43, 94, 287
SetI ASST 6 cut(s) 78, 136, 162, 169, 220, 279
SfaNI GCATC 1 cut(s) 73
Sse9I AATT 2 cut(s) 47, 125
SsiI CCGC 1 cut(s) 92
SspMI CTAG 2 cut(s) 69, 161
TaaI ACNGT 2 cut(s) 58, 297
TaiI ACGT 1 cut(s) 78
TasI AATT 2 cut(s) 47, 125
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 1 cut(s) 200
Tru9I TTAA 1 cut(s) 200
TseFI GTSAC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 2 cut(s) 131, 135
VspI ATTAAT 1 cut(s) 200
XceI RCATGY 1 cut(s) 32
XcmI CCANNNNNNNNNTGG 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 135
XspI CTAG 2 cut(s) 69, 161
Zsp2I ATGCAT 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.