pycom05g18080

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0003287
Physical Location & Seq
Reverse (-)
21114862 .. 21115346
485 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g18080.2

Sequence Viewer

Length: 441 bp
ATGCAATCCTCACTCAAATCACCCTATGAAATACTTCACCACAAACAGCCAGCGTATGCACATTTGCGAGTGTTTGGTTGCTTATGTTTTTCTTCCACCCACTACCATCGTCCCACCAAATTTGATGCAAGAGCCACACGGTGTCTTTTTCTTGGGTATCCATATGGCACAAAGGGATATCGAGTTTACGACCTTCACACCGGTAAAATCTTTATCTCCCGTGATGTTATTTTCCATGAACATGTGTTCCCTTTTTCATCTTCTGCTGCAGTTTCACCACTTGTGTTTCCACATACTCAAGATACTGCCTATGATGATCCCATCATTCATCCGTCCATTCTACTGGAGCTGGATTCCGTCGATCCATCCTCTTCTTCGCCGGTGAGTCCTGTTTCGGTTTCATCTCCTTTTCTTTCCACCTCACCACCTCGTCTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve

Protein Analysis

147

Amino Acids

16.38

Weight (kDa)

8.46

Isoelectric Point (pI)

69.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 311, 356
AcsI RAATTY 1 cut(s) 119
AdeI CACNNNGTG 1 cut(s) 141
AflIII ACRYGT 1 cut(s) 241
AgeI ACCGGT 1 cut(s) 200
AloI GAACNNNNNNTCC 2 cut(s) 231, 263
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
AlwI GGATC 2 cut(s) 311, 356
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 119
AsiGI ACCGGT 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 33
AsuHPI GGTGA 5 cut(s) 12, 29, 267, 394, 414
BbvI GCAGC 1 cut(s) 253
BccI CCATC 3 cut(s) 114, 329, 373
BciVI GTATCC 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 267
BfuI GTATCC 1 cut(s) 168
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmsI GCATC 1 cut(s) 115
BpmI CTGGAG 1 cut(s) 365
BpuEI CTTGAG 1 cut(s) 282
BsaWI WCCGGW 1 cut(s) 200
Bse118I RCCGGY 2 cut(s) 200, 379
Bse1I ACTGG 1 cut(s) 348
BseGI GGATG 2 cut(s) 328, 365
BseNI ACTGG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 253
BshTI ACCGGT 1 cut(s) 200
BsiSI CCGG 2 cut(s) 201, 380
BslFI GGGAC 1 cut(s) 96
BsmFI GGGAC 1 cut(s) 96
Bsp143I GATC 2 cut(s) 316, 361
BspMAI CTGCAG 1 cut(s) 271
BspPI GGATC 2 cut(s) 311, 356
BsrFI RCCGGY 2 cut(s) 200, 379
BsrI ACTGG 1 cut(s) 348
BssAI RCCGGY 2 cut(s) 200, 379
BssMI GATC 2 cut(s) 316, 361
Bst4CI ACNGT 1 cut(s) 141
Bst6I CTCTTC 1 cut(s) 376
BstC8I GCNNGC 1 cut(s) 51
BstF5I GGATG 2 cut(s) 328, 365
BstKTI GATC 2 cut(s) 319, 364
BstMBI GATC 2 cut(s) 316, 361
BstNSI RCATGY 1 cut(s) 245
BstSFI CTRYAG 1 cut(s) 267
BstV1I GCAGC 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 343
BsuI GTATCC 1 cut(s) 168
BtsCI GGATG 2 cut(s) 328, 365
Cac8I GCNNGC 1 cut(s) 51
Cfr10I RCCGGY 2 cut(s) 200, 379
CspAI ACCGGT 1 cut(s) 200
CspCI CAANNNNNGTGG 2 cut(s) 103, 138
CviAII CATG 2 cut(s) 236, 242
CviJI RGCY 3 cut(s) 49, 134, 349
CviKI_1 RGCY 3 cut(s) 49, 134, 349
DpnI GATC 2 cut(s) 318, 363
DpnII GATC 2 cut(s) 316, 361
DraIII CACNNNGTG 1 cut(s) 141
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco32I GATATC 1 cut(s) 179
EcoRV GATATC 1 cut(s) 179
FaeI CATG 2 cut(s) 239, 245
FaiI YATR 9 cut(s) 27, 57, 85, 163, 165, 237, 243, 294, 312
FaqI GGGAC 1 cut(s) 96
FatI CATG 2 cut(s) 235, 241
FauNDI CATATG 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 2 cut(s) 315, 352
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
GsuI CTGGAG 1 cut(s) 365
HapII CCGG 2 cut(s) 201, 380
Hin1II CATG 2 cut(s) 239, 245
HinfI GANTC 2 cut(s) 353, 385
HpaII CCGG 2 cut(s) 201, 380
HphI GGTGA 5 cut(s) 12, 29, 267, 394, 414
Hpy166II GTNNAC 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 1 cut(s) 187
Hpy99I CGWCG 1 cut(s) 362
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 141
HpyCH4V TGCA 4 cut(s) 4, 59, 128, 269
Hsp92II CATG 2 cut(s) 239, 245
Kzo9I GATC 2 cut(s) 316, 361
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 6 cut(s) 63, 214, 329, 335, 393, 402
Lsp1109I GCAGC 1 cut(s) 253
LweI GCATC 1 cut(s) 115
MalI GATC 2 cut(s) 318, 363
MboI GATC 2 cut(s) 316, 361
MboII GAAGA 4 cut(s) 84, 252, 363, 366
MluCI AATT 1 cut(s) 119
MlyI GAGTC 1 cut(s) 394
MnlI CCTC 4 cut(s) 19, 379, 430, 438
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 1 cut(s) 435
MslI CAYNNNNRTG 1 cut(s) 240
MspI CCGG 2 cut(s) 201, 380
NdeI CATATG 1 cut(s) 163
NdeII GATC 2 cut(s) 316, 361
NlaIII CATG 2 cut(s) 239, 245
NspI RCATGY 1 cut(s) 245
PciI ACATGT 1 cut(s) 241
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 353
PinAI ACCGGT 1 cut(s) 200
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 393
PpsI GAGTC 1 cut(s) 393
PscI ACATGT 1 cut(s) 241
PstI CTGCAG 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 1 cut(s) 435
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 316, 361
SchI GAGTC 1 cut(s) 394
SetI ASST 4 cut(s) 195, 351, 422, 430
SfaNI GCATC 1 cut(s) 115
SfcI CTRYAG 1 cut(s) 267
SgrAI CRCCGGYG 1 cut(s) 379
SmiMI CAYNNNNRTG 1 cut(s) 240
SmlI CTYRAG 1 cut(s) 297
SmoI CTYRAG 1 cut(s) 297
Sse9I AATT 1 cut(s) 119
TaaI ACNGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 181, 360
TasI AATT 1 cut(s) 119
TfiI GAWTC 1 cut(s) 353
Tru1I TTAA 1 cut(s) 435
Tru9I TTAA 1 cut(s) 435
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 5 cut(s) 42, 246, 252, 317, 390
TspGWI ACGGA 2 cut(s) 321, 346
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 245
XmnI GAANNNNTTC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.