FvH4_4g12541

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0003287
Physical Location & Seq
Forward (+)
16237208 .. 16238091
884 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12541.t1

Sequence Viewer

Length: 372 bp
ATGTTGCTTAAGTCCAAAGATGCTGTTTTTTCTGCCTTCACAGCCTTCCATAATCTTATTCGTACTCAGTATGATGCACGTGTTAAAATCTTTCGTTCAGATAATAGAGGGGAGAAGTCATGTTTCTATGAAGATTTGTTTGGTGAATTTTTTGAGGAGTCAACGGAAGAAATTGGAACAGAAAGAAATACTTCATCAACTGGTCAACCATTTGTTAACGACCAGCCGTCCTCATCAAGAAGCTATGACCCAAAACTCAATCAGTCCTTGAGGAACAATGGACCCAGACTCACCGACGAGCCTTTAGCGTCGTCGCCTGATTCATCGACGCCACCAGATCGACATGCCACCAAGGATTCGTCGAACTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.85

Weight (kDa)

5.15

Isoelectric Point (pI)

64.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 146
AcvI CACGTG 1 cut(s) 80
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 1 cut(s) 64
AflII CTTAAG 1 cut(s) 8
AflIII ACRYGT 1 cut(s) 79
AhdI GACNNNNNGTC 1 cut(s) 226
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
ApoI RAATTY 1 cut(s) 146
Asp700I GAANNNNTTC 1 cut(s) 190
AspS9I GGNCC 1 cut(s) 281
AsuHPI GGTGA 2 cut(s) 155, 283
AvaII GGWCC 1 cut(s) 281
BbrPI CACGTG 1 cut(s) 80
BceAI ACGGC 1 cut(s) 211
BfrI CTTAAG 1 cut(s) 8
Bme18I GGWCC 1 cut(s) 281
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgT120I GGNCC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 283
BmsI GCATC 2 cut(s) 10, 64
BpuEI CTTGAG 1 cut(s) 289
BsaAI YACGTR 1 cut(s) 80
BsaHI GRCGYC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 351
Bse1I ACTGG 1 cut(s) 205
BseDI CCNNGG 1 cut(s) 351
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 170
Bsp143I GATC 1 cut(s) 337
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 283
BspTI CTTAAG 1 cut(s) 8
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 1 cut(s) 351
BssMI GATC 1 cut(s) 337
BssNI GRCGYC 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 351
BstACI GRCGYC 1 cut(s) 329
BstAFI CTTAAG 1 cut(s) 8
BstBAI YACGTR 1 cut(s) 80
BstDEI CTNAG 2 cut(s) 66, 369
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 281
CseI GACGC 2 cut(s) 297, 337
Csp6I GTAC 1 cut(s) 63
CviAII CATG 2 cut(s) 120, 344
CviJI RGCY 4 cut(s) 44, 226, 243, 301
CviKI_1 RGCY 4 cut(s) 44, 226, 243, 301
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 2 cut(s) 66, 369
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
DriI GACNNNNNGTC 1 cut(s) 226
Eam1105I GACNNNNNGTC 1 cut(s) 226
Eco130I CCWWGG 1 cut(s) 351
Eco47I GGWCC 1 cut(s) 281
Eco72I CACGTG 1 cut(s) 80
EcoT14I CCWWGG 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 351
FaeI CATG 2 cut(s) 123, 347
FaiI YATR 6 cut(s) 51, 72, 121, 129, 246, 345
FalI AAGNNNNNCTT 2 cut(s) 175, 207
FatI CATG 2 cut(s) 119, 343
HgaI GACGC 2 cut(s) 297, 337
Hin1I GRCGYC 1 cut(s) 329
Hin1II CATG 2 cut(s) 123, 347
HincII GTYRAC 3 cut(s) 162, 206, 217
HindII GTYRAC 3 cut(s) 162, 206, 217
HinfI GANTC 4 cut(s) 158, 288, 320, 356
HpaI GTTAAC 1 cut(s) 217
HphI GGTGA 2 cut(s) 155, 283
Hpy166II GTNNAC 3 cut(s) 162, 206, 217
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 1 cut(s) 237
Hpy8I GTNNAC 3 cut(s) 162, 206, 217
Hpy99I CGWCG 5 cut(s) 299, 313, 316, 331, 364
HpyAV CCTTC 2 cut(s) 46, 55
HpyCH4IV ACGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 2 cut(s) 66, 369
HpySE526I ACGT 1 cut(s) 79
Hsp92I GRCGYC 1 cut(s) 329
Hsp92II CATG 2 cut(s) 123, 347
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 1 cut(s) 337
LpnPI CCDG 5 cut(s) 186, 236, 298, 330, 348
LweI GCATC 2 cut(s) 10, 64
MaeII ACGT 1 cut(s) 79
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 2 cut(s) 143, 179
MluCI AATT 2 cut(s) 146, 171
MlyI GAGTC 2 cut(s) 167, 282
MnlI CCTC 4 cut(s) 101, 148, 241, 264
MroXI GAANNNNTTC 1 cut(s) 190
MseI TTAA 3 cut(s) 9, 84, 216
MspCI CTTAAG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeII GATC 1 cut(s) 337
NlaIII CATG 2 cut(s) 123, 347
NlaIV GGNNCC 1 cut(s) 283
NspI RCATGY 1 cut(s) 347
PdmI GAANNNNTTC 1 cut(s) 190
PfeI GAWTC 2 cut(s) 320, 356
PleI GAGTC 2 cut(s) 166, 282
PmaCI CACGTG 1 cut(s) 80
PmlI CACGTG 1 cut(s) 80
PpsI GAGTC 2 cut(s) 166, 282
Ppu21I YACGTR 1 cut(s) 80
PspCI CACGTG 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 281
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 3 cut(s) 9, 84, 216
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 1 cut(s) 281
SchI GAGTC 2 cut(s) 167, 282
SetI ASST 2 cut(s) 82, 245
SfaNI GCATC 2 cut(s) 10, 64
SinI GGWCC 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 8, 268
SmoI CTYRAG 2 cut(s) 8, 268
Sse9I AATT 2 cut(s) 146, 171
StyI CCWWGG 1 cut(s) 351
TaiI ACGT 1 cut(s) 82
TaqI TCGA 3 cut(s) 326, 340, 362
TasI AATT 2 cut(s) 146, 171
TfiI GAWTC 2 cut(s) 320, 356
Tru1I TTAA 3 cut(s) 9, 84, 216
Tru9I TTAA 3 cut(s) 9, 84, 216
TspDTI ATGAA 3 cut(s) 144, 183, 312
TspGWI ACGGA 1 cut(s) 179
Vha464I CTTAAG 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 281
XapI RAATTY 1 cut(s) 146
XceI RCATGY 1 cut(s) 347
XmnI GAANNNNTTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.