Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003287

Physical Location & Seq

Genomic Coordinates Forward (+)

2918673 .. 2919382

Gene Structure 710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAACTCTCACCATAGCCAACAAGATGAGGATTCATGGGGAAAAGATGGAAGACGTGGTGGTCATCAAAAAGATCCATTGAAGAGTCTAATCGATCTTGACATCTTGTCCATCGACGAACTACAAAGTAGCTTGTTGGTCCAACAAGGCGGGAGAGGTAGACGCAACAGTTTCAGAGGAAGAGGACGAGGGAGGGGTAGAAATGGACCTGACAAGTTTACCCTTGAATGTTACAATTGTCATGAACTTGGGCATTTTCAGTGGGAATGCCCTAAGAAGGGGAATGATTCAAAAGGTTTCTTTGCAGAAACAAGTGAAGAAATGTTGTTGATGGCTTATGTGGATATCGAGGAGCACATGTGTGGTAAGAAGGAGATGTTCACAGACTTGGATGAAACCTTCAGGAAATCTATGAAGTTAGGGAACAATTCAAGCTTGGTTGTGCTAGGGAAGGGACATGTTCGTATGGAAGTCAATGGAATCATGCAGGTCATCACTGGGGTATTCTATGTGTCGGATTTAAAGAATAATTTACTGAGCATTAGACAATTGCAAGAGAATGGCCTTGCCATTTTTATAAAATGTTGGACAAATGGTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_2 Retrotran_gag_2 Retrotran_gag_3 Retrotrans_gag gag_pre-integrs rve zf-CCHC

Protein Analysis

201

Amino Acids

22.71

Weight (kDa)

7.05

Isoelectric Point (pI)

35.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11591
fragaria_vesca	FvH4_2g20411 FvH4_2g29931 FvH4_3g14181 FvH4_4g00781 FvH4_4g12541 FvH4_5g22143 FvH4_7g24581
pyrus_communis	pycom04g03170 pycom05g18080 pycom12g05030 pycom13g18540
rosa_chinensis	RchiOBHm_Chr1g0313681 RchiOBHm_Chr1g0344501 RchiOBHm_Chr2g0157511
rosa_laevigata	RLG00000008144 RLG00000008360
rosa_multiflora	Rmu_sc0003765.1_g000035 Rmu_sc0004343.1_g000026 Rmu_sc0006087.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038680 Rroxscaffold_3G00247490 Rroxscaffold_4G00315330 Rroxscaffold_5G00355970 Rroxscaffold_7G00214090
rosa_rugosa	Rorug04G0109300 Rorug04G0109400
rosa_samantha	Rh1AG403200 Rh4AG167500 Rh4BG164600 Rh4CG179400 Rh4DG162300
rosa_wichuraiana	Rw4G013620 Rw4G013850 Rw4G013950 Rw6G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	578
AasI	GACNNNNNNGTC	1 cut(s)	60
Acc36I	ACCTGC	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	150
AclWI	GGATC	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	385
AfiI	CCNNNNNNNGG	2 cut(s)	277, 278
AflIII	ACRYGT	2 cut(s)	357, 457
AgsI	TTSAA	4 cut(s)	82, 227, 291, 432
AhdI	GACNNNNNGTC	2 cut(s)	106, 594
AjiI	CACGTC	1 cut(s)	56
AleI	CACNNNNGTG	1 cut(s)	360
AluBI	AGCT	2 cut(s)	132, 435
AluI	AGCT	2 cut(s)	132, 435
Alw21I	GWGCWC	1 cut(s)	357
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	562
AspS9I	GGNCC	2 cut(s)	139, 206
AvaII	GGWCC	2 cut(s)	139, 206
BbsI	GAAGAC	1 cut(s)	58
Bbv12I	GWGCWC	1 cut(s)	357
BccI	CCATC	3 cut(s)	41, 119, 325
BfaI	CTAG	1 cut(s)	446
BfuAI	ACCTGC	1 cut(s)	478
Bme18I	GGWCC	2 cut(s)	139, 206
BmeRI	GACNNNNNGTC	2 cut(s)	106, 594
BmgBI	CACGTC	1 cut(s)	56
BmgT120I	GGNCC	2 cut(s)	139, 206
BmrI	ACTGGG	1 cut(s)	507
BmuI	ACTGGG	1 cut(s)	507
BpiI	GAAGAC	1 cut(s)	58
Bsa29I	ATCGAT	1 cut(s)	93
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 278
Bse1I	ACTGG	1 cut(s)	502
BseCI	ATCGAT	1 cut(s)	93
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	2 cut(s)	277, 278
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	1 cut(s)	365
BshFI	GGCC	1 cut(s)	564
BshVI	ATCGAT	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	357
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	277, 278
BsmFI	GGGAC	1 cut(s)	468
BsmI	GAATGC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	564
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	73, 94
BspACI	CCGC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	564
BspCNI	CTCAG	1 cut(s)	528
BspDI	ATCGAT	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	478
BspPI	GGATC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	502
BssMI	GATC	2 cut(s)	73, 94
Bst4CI	ACNGT	1 cut(s)	170
Bst6I	CTCTTC	2 cut(s)	77, 175
BstDEI	CTNAG	2 cut(s)	273, 536
BstF5I	GGATG	1 cut(s)	397
BstKTI	GATC	2 cut(s)	76, 97
BstMBI	GATC	2 cut(s)	73, 94
BstNSI	RCATGY	2 cut(s)	361, 461
BstV2I	GAAGAC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	564
BsuTUI	ATCGAT	1 cut(s)	93
BtrI	CACGTC	1 cut(s)	56
BtsCI	GGATG	1 cut(s)	397
BtsIMutI	CAGTG	2 cut(s)	266, 495
BveI	ACCTGC	1 cut(s)	478
CciI	TCATGA	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	139, 206
ClaI	ATCGAT	1 cut(s)	93
CseI	GACGC	1 cut(s)	171
CviAII	CATG	5 cut(s)	36, 242, 358, 458, 484
CviJI	RGCY	5 cut(s)	18, 132, 335, 435, 564
CviKI_1	RGCY	5 cut(s)	18, 132, 335, 435, 564
DdeI	CTNAG	2 cut(s)	273, 536
DpnI	GATC	2 cut(s)	75, 96
DpnII	GATC	2 cut(s)	73, 94
DraI	TTTAAA	1 cut(s)	522
DrdI	GACNNNNNNGTC	1 cut(s)	60
DriI	GACNNNNNGTC	2 cut(s)	106, 594
DseDI	GACNNNNNNGTC	1 cut(s)	60
Eam1104I	CTCTTC	2 cut(s)	77, 175
Eam1105I	GACNNNNNGTC	2 cut(s)	106, 594
EarI	CTCTTC	2 cut(s)	77, 175
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	139, 206
Eco57I	CTGAAG	1 cut(s)	385
EcoRV	GATATC	1 cut(s)	346
FaeI	CATG	5 cut(s)	39, 245, 361, 461, 487
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	5 cut(s)	35, 241, 357, 457, 483
FauI	CCCGC	1 cut(s)	143
FblI	GTMKAC	1 cut(s)	160
FokI	GGATG	1 cut(s)	404
FspBI	CTAG	1 cut(s)	446
HaeIII	GGCC	1 cut(s)	564
HgaI	GACGC	1 cut(s)	171
Hin1II	CATG	5 cut(s)	39, 245, 361, 461, 487
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	4 cut(s)	32, 85, 287, 480
Hpy166II	GTNNAC	3 cut(s)	161, 219, 381
Hpy188I	TCNGA	2 cut(s)	176, 517
Hpy188III	TCNNGA	3 cut(s)	98, 242, 403
Hpy8I	GTNNAC	3 cut(s)	161, 219, 381
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	4 cut(s)	271, 364, 409, 445
HpyCH4III	ACNGT	1 cut(s)	170
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	3 cut(s)	305, 487, 553
HpyF3I	CTNAG	2 cut(s)	273, 536
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	5 cut(s)	39, 245, 361, 461, 487
Kzo9I	GATC	2 cut(s)	73, 94
LmnI	GCTCC	1 cut(s)	352
LpnPI	CCDG	4 cut(s)	222, 388, 473, 483
MaeI	CTAG	1 cut(s)	446
MaeII	ACGT	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	230
MalI	GATC	2 cut(s)	75, 96
MboI	GATC	2 cut(s)	73, 94
MboII	GAAGA	4 cut(s)	63, 94, 192, 329
MfeI	CAATTG	2 cut(s)	235, 548
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	4 cut(s)	235, 427, 529, 548
MlyI	GAGTC	1 cut(s)	94
MmeI	TCCRAC	3 cut(s)	166, 495, 566
MnlI	CCTC	7 cut(s)	22, 149, 170, 176, 182, 186, 343
MseI	TTAA	1 cut(s)	521
MslI	CAYNNNNRTG	1 cut(s)	360
MunI	CAATTG	2 cut(s)	235, 548
Mva1269I	GAATGC	1 cut(s)	272
NdeII	GATC	2 cut(s)	73, 94
NlaIII	CATG	5 cut(s)	39, 245, 361, 461, 487
NspI	RCATGY	2 cut(s)	361, 461
OliI	CACNNNNGTG	1 cut(s)	360
PagI	TCATGA	1 cut(s)	241
PciI	ACATGT	2 cut(s)	357, 457
PctI	GAATGC	1 cut(s)	272
PfeI	GAWTC	3 cut(s)	32, 287, 480
PleI	GAGTC	1 cut(s)	93
PpsI	GAGTC	1 cut(s)	93
PscI	ACATGT	2 cut(s)	357, 457
PsiI	TTATAA	1 cut(s)	578
PspPI	GGNCC	2 cut(s)	139, 206
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	1 cut(s)	521
Sau3AI	GATC	2 cut(s)	73, 94
Sau96I	GGNCC	2 cut(s)	139, 206
SchI	GAGTC	1 cut(s)	94
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	8 cut(s)	58, 134, 160, 211, 298, 401, 437, 492
SinI	GGWCC	2 cut(s)	139, 206
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	4 cut(s)	235, 427, 529, 548
SsiI	CCGC	1 cut(s)	150
SspMI	CTAG	1 cut(s)	446
TaaI	ACNGT	1 cut(s)	170
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	93, 114, 348
TasI	AATT	4 cut(s)	235, 427, 529, 548
TfiI	GAWTC	3 cut(s)	32, 287, 480
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	2 cut(s)	266, 502
TspDTI	ATGAA	5 cut(s)	17, 24, 258, 408, 428
TspRI	CASTG	2 cut(s)	266, 502
VpaK11BI	GGWCC	2 cut(s)	139, 206
XceI	RCATGY	2 cut(s)	361, 461
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	1 cut(s)	446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.