Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003287

Physical Location & Seq

Genomic Coordinates Reverse (-)

17128059 .. 17129636

Gene Structure 1578 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g20411.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAATGTACCTGTAGAATATTGGGGAGAAGCTGTGACATATGCTGCCTACCTCATTAATCGTACCCCTTCTCGGGTTATTAAATGTGAAAACCCTCTACAACAGCTTCAGAATTTTCTCTCAGTTCCTTCGTTGCCTAACTTGGAGCCTCGTGTATTTGGATGTACAGTGTATGTTCATATTCCAAAACAACAACAGAGTAAGCTTGATCCCCGTGCAAGGAAGTGTATCTTTATGGGTTATGCAGATTTTCAGAAGGGATATAGATGTTATGATCCTCTTACAGACACCATGCATGTATCCCTTGATGTGTCTTTTTGTGAATCTGAACCTTACTACTCAGGGGGAGTTTCAGATTCTTCCCTTCAGGGGGAGAGTAGTCGTGAAGAGAATAATCGAAATCTATTTGAATTTGAAGAATTTGCAGAATTAGAAGAATTGGAGAACAAATTCGGAGTTGGAGAAAATAACAATAATCAAGAAAAAGAAGTCACATTGGAGAATTTTCGTACTGACACTGACCCAAGTAGTGTGGACCCAAGCACTGACGCAAGGCACCCCATCGGTTATGCAAGTGGGCTTTACCCTGACACACAAGCTGTCGTTGACTCACGCATGGGGACGAGCGCTGGACCAAGCCAGCCCAGCCGGGTTCCATCATCAGGCTCCGATGCTGAGGCCCAATCGCCAGAAGCCGCGCTGATTCAGCTGGAAGCCGCGCCAAATCATCTAGCCCCTAACCTAGTGTCAACACGTGTCGATCCTATTAATAGTCCCATTGATCAACAGGGATCAATTCCTTTCAGTGGTCCTACGAATTTATCAGACAATTATCCGGTAACTGAAGATTCTATCATGTCAAATGTTTTCCTTTTCTCTCCACCATCAACTGAAGAATCCGCTGAGAATGTTCCACCTCAAGTACCTTGGGAAGAAGACTGTTGGGTATTCACCGTAAAATTGAAAGCAGATGGGAGCATTGACAGGGATAAAGCACGGTTGGTTGCCAAGGGATACACCCAGCGGTATGGCATTGATTATGAAGAAACGTTTGCGCCTGTAGCAAAGATCAACACTGTTCGAATCTTGATTTCACTTGCGGCAACTAAAGATCGGCCTCTACGACAGTTTGATGTGAAGAATGCTTTCCTCAATGGAAACTTGGAAGAAGAGGTGTATATGGACATGCCCCCAGGAGTCAAATGTAGATCTTGCGATGTCGGAAAGGTTTGTAAGTTGAAGAAGTCTTTGTATGGTTTGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC RVT_2 TIR

Protein Analysis

422

Amino Acids

46.83

Weight (kDa)

4.73

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SH3_retrovirus	PF25597	55 - 112	7.4e-25	Retroviral polymerase SH3-like domain
RVT_2	PF07727	314 - 421	2e-32	Reverse transcriptase (RNA-dependent DNA polymerase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11591
fragaria_vesca	FvH4_2g20411 FvH4_2g29931 FvH4_3g14181 FvH4_4g00781 FvH4_4g12541 FvH4_5g22143 FvH4_7g24581
pyrus_communis	pycom04g03170 pycom05g18080 pycom12g05030 pycom13g18540
rosa_chinensis	RchiOBHm_Chr1g0313681 RchiOBHm_Chr1g0344501 RchiOBHm_Chr2g0157511
rosa_laevigata	RLG00000008144 RLG00000008360
rosa_multiflora	Rmu_sc0003765.1_g000035 Rmu_sc0004343.1_g000026 Rmu_sc0006087.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038680 Rroxscaffold_3G00247490 Rroxscaffold_4G00315330 Rroxscaffold_5G00355970 Rroxscaffold_7G00214090
rosa_rugosa	Rorug04G0109300 Rorug04G0109400
rosa_samantha	Rh1AG403200 Rh4AG167500 Rh4BG164600 Rh4CG179400 Rh4DG162300
rosa_wichuraiana	Rw4G013620 Rw4G013850 Rw4G013950 Rw6G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	555
AccII	CGCG	2 cut(s)	698, 719
AciI	CCGC	5 cut(s)	696, 717, 900, 1024, 1100
AclI	AACGTT	1 cut(s)	1049
AclWI	GGATC	4 cut(s)	203, 269, 755, 799
AcsI	RAATTY	6 cut(s)	112, 410, 419, 449, 502, 817
AcuI	CTGAAG	4 cut(s)	92, 350, 864, 912
AcvI	CACGTG	1 cut(s)	755
AfaI	GTAC	5 cut(s)	9, 64, 166, 511, 924
AfeI	AGCGCT	1 cut(s)	628
AfiI	CCNNNNNNNGG	7 cut(s)	72, 73, 219, 369, 370, 662, 806
AflIII	ACRYGT	2 cut(s)	752, 754
AgsI	TTSAA	5 cut(s)	410, 416, 964, 1240, 1261
AjnI	CCWGG	1 cut(s)	1192
AluBI	AGCT	5 cut(s)	32, 106, 205, 599, 709
AluI	AGCT	5 cut(s)	32, 106, 205, 599, 709
AlwI	GGATC	4 cut(s)	203, 269, 755, 799
Ama87I	CYCGRG	1 cut(s)	72
Aor51HI	AGCGCT	1 cut(s)	628
AoxI	GGCC	2 cut(s)	678, 1115
ApeKI	GCWGC	1 cut(s)	44
ApoI	RAATTY	6 cut(s)	112, 410, 419, 449, 502, 817
AseI	ATTAAT	2 cut(s)	57, 768
Asp700I	GAANNNNTTC	2 cut(s)	449, 1145
AspLEI	GCGC	4 cut(s)	629, 700, 721, 1057
AspS9I	GGNCC	4 cut(s)	535, 632, 679, 809
AsuC2I	CCSGG	1 cut(s)	650
AsuHPI	GGTGA	1 cut(s)	943
AsuII	TTCGAA	1 cut(s)	1081
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	3 cut(s)	535, 632, 809
BanI	GGYRCC	1 cut(s)	555
BauI	CACGAG	1 cut(s)	150
BbrPI	CACGTG	1 cut(s)	755
BbsI	GAAGAC	1 cut(s)	942
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	31
BccI	CCATC	4 cut(s)	569, 664, 892, 965
BciT130I	CCWGG	1 cut(s)	1194
BciVI	GTATCC	2 cut(s)	310, 1007
BclI	TGATCA	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	650
BfaI	CTAG	2 cut(s)	731, 743
BfmI	CTRYAG	2 cut(s)	12, 1059
BfoI	RGCGCY	1 cut(s)	630
BfuI	GTATCC	2 cut(s)	310, 1007
BglII	AGATCT	1 cut(s)	1208
BisI	GCNGC	4 cut(s)	45, 696, 717, 1101
BlsI	GCNGC	4 cut(s)	46, 697, 718, 1102
Bme1390I	CCNGG	2 cut(s)	650, 1194
Bme18I	GGWCC	3 cut(s)	535, 632, 809
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	4 cut(s)	535, 632, 679, 809
BmiI	GGNNCC	5 cut(s)	147, 537, 557, 654, 667
BmrFI	CCNGG	2 cut(s)	650, 1194
BmsI	GCATC	1 cut(s)	661
BpiI	GAAGAC	1 cut(s)	942
Bpu10I	CCTNAGC	1 cut(s)	675
Bpu14I	TTCGAA	1 cut(s)	1081
BpuEI	CTTGAG	1 cut(s)	903
BpuMI	CCSGG	1 cut(s)	650
BsaAI	YACGTR	1 cut(s)	755
BsaJI	CCNNGG	3 cut(s)	926, 1008, 1192
BsaWI	WCCGGW	1 cut(s)	835
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
Bsc4I	CCNNNNNNNGG	7 cut(s)	72, 73, 219, 369, 370, 662, 806
BseBI	CCWGG	1 cut(s)	1194
BseDI	CCNNGG	3 cut(s)	926, 1008, 1192
BseGI	GGATG	1 cut(s)	167
BseLI	CCNNNNNNNGG	7 cut(s)	72, 73, 219, 369, 370, 662, 806
BseMII	CTCAG	4 cut(s)	135, 354, 666, 894
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	2 cut(s)	644, 1020
Bsh1236I	CGCG	2 cut(s)	698, 719
BshFI	GGCC	2 cut(s)	680, 1117
BshNI	GGYRCC	1 cut(s)	555
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	649, 836
BslFI	GGGAC	2 cut(s)	634, 759
BslI	CCNNNNNNNGG	7 cut(s)	72, 73, 219, 369, 370, 662, 806
BsmFI	GGGAC	2 cut(s)	634, 759
BsmI	GAATGC	1 cut(s)	1147
BsnI	GGCC	2 cut(s)	680, 1117
BsoBI	CYCGRG	1 cut(s)	72
Bsp119I	TTCGAA	1 cut(s)	1081
Bsp1407I	TGTACA	1 cut(s)	164
Bsp143I	GATC	8 cut(s)	208, 274, 760, 781, 791, 1068, 1111, 1208
BspACI	CCGC	5 cut(s)	696, 717, 900, 1024, 1100
BspANI	GGCC	2 cut(s)	680, 1117
BspCNI	CTCAG	4 cut(s)	134, 353, 667, 895
BspFNI	CGCG	2 cut(s)	698, 719
BspLI	GGNNCC	5 cut(s)	147, 537, 557, 654, 667
BspPI	GGATC	4 cut(s)	203, 269, 755, 799
BspT104I	TTCGAA	1 cut(s)	1081
BspT107I	GGYRCC	1 cut(s)	555
BsrGI	TGTACA	1 cut(s)	164
BssECI	CCNNGG	3 cut(s)	926, 1008, 1192
BssMI	GATC	8 cut(s)	208, 274, 760, 781, 791, 1068, 1111, 1208
BssSI	CACGAG	1 cut(s)	150
BssT1I	CCWWGG	2 cut(s)	926, 1008
Bst2BI	CACGAG	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	1194
Bst4CI	ACNGT	6 cut(s)	169, 941, 955, 999, 1078, 1128
Bst6I	CTCTTC	2 cut(s)	381, 1164
BstAUI	TGTACA	1 cut(s)	164
BstBAI	YACGTR	1 cut(s)	755
BstBI	TTCGAA	1 cut(s)	1081
BstC8I	GCNNGC	1 cut(s)	641
BstDEI	CTNAG	4 cut(s)	121, 340, 675, 903
BstF5I	GGATG	1 cut(s)	167
BstFNI	CGCG	2 cut(s)	698, 719
BstH2I	RGCGCY	1 cut(s)	630
BstHHI	GCGC	4 cut(s)	629, 700, 721, 1057
BstKTI	GATC	8 cut(s)	211, 277, 763, 784, 794, 1071, 1114, 1211
BstMBI	GATC	8 cut(s)	208, 274, 760, 781, 791, 1068, 1111, 1208
BstMWI	GCNNNNNNNGC	3 cut(s)	645, 706, 1061
BstNI	CCWGG	1 cut(s)	1194
BstNSI	RCATGY	2 cut(s)	299, 1189
BstSCI	CCNGG	2 cut(s)	648, 1192
BstSFI	CTRYAG	2 cut(s)	12, 1059
BstUI	CGCG	2 cut(s)	698, 719
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	942
BstX2I	RGATCY	1 cut(s)	1208
BstXI	CCANNNNNNTGG	1 cut(s)	1028
BstYI	RGATCY	1 cut(s)	1208
BsuI	GTATCC	2 cut(s)	310, 1007
BsuRI	GGCC	2 cut(s)	680, 1117
BtgZI	GCGATG	1 cut(s)	1230
BtsCI	GGATG	1 cut(s)	167
BtsIMutI	CAGTG	5 cut(s)	174, 516, 543, 811, 1074
Cac8I	GCNNGC	1 cut(s)	641
CfoI	GCGC	4 cut(s)	629, 700, 721, 1057
Cfr13I	GGNCC	4 cut(s)	535, 632, 679, 809
CseI	GACGC	1 cut(s)	557
Csp6I	GTAC	5 cut(s)	8, 63, 165, 510, 923
CspCI	CAANNNNNGTGG	2 cut(s)	513, 548
CviAII	CATG	5 cut(s)	292, 296, 616, 856, 1186
CviQI	GTAC	5 cut(s)	8, 63, 165, 510, 923
DdeI	CTNAG	4 cut(s)	121, 340, 675, 903
DpnI	GATC	8 cut(s)	210, 276, 762, 783, 793, 1070, 1113, 1210
DpnII	GATC	8 cut(s)	208, 274, 760, 781, 791, 1068, 1111, 1208
Eam1104I	CTCTTC	2 cut(s)	381, 1164
EarI	CTCTTC	2 cut(s)	381, 1164
Eco130I	CCWWGG	2 cut(s)	926, 1008
Eco47I	GGWCC	3 cut(s)	535, 632, 809
Eco47III	AGCGCT	1 cut(s)	628
Eco57I	CTGAAG	4 cut(s)	92, 350, 864, 912
Eco72I	CACGTG	1 cut(s)	755
Eco88I	CYCGRG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	1192
EcoT14I	CCWWGG	2 cut(s)	926, 1008
EcoT22I	ATGCAT	1 cut(s)	297
ErhI	CCWWGG	2 cut(s)	926, 1008
FaeI	CATG	5 cut(s)	295, 299, 619, 859, 1189
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FaqI	GGGAC	2 cut(s)	634, 759
FatI	CATG	5 cut(s)	291, 295, 615, 855, 1185
FauNDI	CATATG	1 cut(s)	40
FbaI	TGATCA	1 cut(s)	781
Fnu4HI	GCNGC	4 cut(s)	45, 696, 717, 1101
FokI	GGATG	1 cut(s)	174
Fsp4HI	GCNGC	4 cut(s)	45, 696, 717, 1101
FspBI	CTAG	2 cut(s)	731, 743
GlaI	GCGC	4 cut(s)	628, 699, 720, 1056
GluI	GCNGC	4 cut(s)	45, 696, 717, 1101
GsaI	CCCAGC	2 cut(s)	648, 1024
HaeII	RGCGCY	1 cut(s)	630
HaeIII	GGCC	2 cut(s)	680, 1117
HapII	CCGG	2 cut(s)	649, 836
HgaI	GACGC	1 cut(s)	557
HhaI	GCGC	4 cut(s)	629, 700, 721, 1057
Hin1II	CATG	5 cut(s)	295, 299, 619, 859, 1189
Hin6I	GCGC	4 cut(s)	627, 698, 719, 1055
HinP1I	GCGC	4 cut(s)	627, 698, 719, 1055
HincII	GTYRAC	2 cut(s)	607, 750
HindII	GTYRAC	2 cut(s)	607, 750
HindIII	AAGCTT	1 cut(s)	203
HinfI	GANTC	8 cut(s)	323, 356, 608, 703, 848, 896, 1083, 1197
HpaII	CCGG	2 cut(s)	649, 836
HphI	GGTGA	1 cut(s)	943
Hpy166II	GTNNAC	3 cut(s)	535, 607, 750
Hpy188I	TCNGA	8 cut(s)	111, 255, 328, 355, 455, 670, 826, 1223
Hpy188III	TCNNGA	3 cut(s)	383, 479, 1087
Hpy8I	GTNNAC	3 cut(s)	535, 607, 750
HpyAV	CCTTC	4 cut(s)	78, 138, 250, 374
HpyCH4III	ACNGT	6 cut(s)	169, 941, 955, 999, 1078, 1128
HpyCH4IV	ACGT	2 cut(s)	754, 1049
HpyCH4V	TGCA	5 cut(s)	218, 245, 295, 425, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	645, 706, 1061
HpyF3I	CTNAG	4 cut(s)	121, 340, 675, 903
HpySE526I	ACGT	2 cut(s)	754, 1049
Hsp92II	CATG	5 cut(s)	295, 299, 619, 859, 1189
HspAI	GCGC	4 cut(s)	627, 698, 719, 1055
Ksp22I	TGATCA	1 cut(s)	781
Kzo9I	GATC	8 cut(s)	208, 274, 760, 781, 791, 1068, 1111, 1208
LmnI	GCTCC	3 cut(s)	145, 671, 975
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	661
MaeI	CTAG	2 cut(s)	731, 743
MaeII	ACGT	2 cut(s)	754, 1049
MaeIII	GTNAC	3 cut(s)	34, 490, 838
MalI	GATC	8 cut(s)	210, 276, 762, 783, 793, 1070, 1113, 1210
MboI	GATC	8 cut(s)	208, 274, 760, 781, 791, 1068, 1111, 1208
MflI	RGATCY	1 cut(s)	1208
MlyI	GAGTC	2 cut(s)	602, 1206
MmeI	TCCRAC	2 cut(s)	439, 1201
MnlI	CCTC	9 cut(s)	62, 105, 159, 288, 670, 927, 1128, 1160, 1165
Mph1103I	ATGCAT	1 cut(s)	297
MroXI	GAANNNNTTC	2 cut(s)	449, 1145
MseI	TTAA	3 cut(s)	57, 81, 768
MspA1I	CMGCKG	3 cut(s)	709, 902, 1024
MspI	CCGG	2 cut(s)	649, 836
MspR9I	CCNGG	2 cut(s)	650, 1194
Mva1269I	GAATGC	1 cut(s)	1147
MvaI	CCWGG	1 cut(s)	1194
MvnI	CGCG	2 cut(s)	698, 719
MwoI	GCNNNNNNNGC	3 cut(s)	645, 706, 1061
NciI	CCSGG	1 cut(s)	650
NdeI	CATATG	1 cut(s)	40
NdeII	GATC	8 cut(s)	208, 274, 760, 781, 791, 1068, 1111, 1208
NlaIII	CATG	5 cut(s)	295, 299, 619, 859, 1189
NlaIV	GGNNCC	5 cut(s)	147, 537, 557, 654, 667
NmuCI	GTSAC	2 cut(s)	34, 490
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	2 cut(s)	299, 1189
NspV	TTCGAA	1 cut(s)	1081
PcsI	WCGNNNNNNNCGW	1 cut(s)	1120
PctI	GAATGC	1 cut(s)	1147
PdmI	GAANNNNTTC	2 cut(s)	449, 1145
PfeI	GAWTC	6 cut(s)	323, 356, 703, 848, 896, 1083
PkrI	GCNGC	4 cut(s)	46, 697, 718, 1102
PleI	GAGTC	2 cut(s)	602, 1205
PmaCI	CACGTG	1 cut(s)	755
PmlI	CACGTG	1 cut(s)	755
PpsI	GAGTC	2 cut(s)	602, 1205
Ppu21I	YACGTR	1 cut(s)	755
PshBI	ATTAAT	2 cut(s)	57, 768
Psp1406I	AACGTT	1 cut(s)	1049
Psp6I	CCWGG	1 cut(s)	1192
PspCI	CACGTG	1 cut(s)	755
PspFI	CCCAGC	2 cut(s)	644, 1020
PspGI	CCWGG	1 cut(s)	1192
PspN4I	GGNNCC	5 cut(s)	147, 537, 557, 654, 667
PspPI	GGNCC	4 cut(s)	535, 632, 679, 809
PsuI	RGATCY	1 cut(s)	1208
PvuII	CAGCTG	1 cut(s)	709
RsaI	GTAC	5 cut(s)	9, 64, 166, 511, 924
RsaNI	GTAC	5 cut(s)	8, 63, 165, 510, 923
SaqAI	TTAA	3 cut(s)	57, 81, 768
SatI	GCNGC	4 cut(s)	45, 696, 717, 1101
Sau3AI	GATC	8 cut(s)	208, 274, 760, 781, 791, 1068, 1111, 1208
Sau96I	GGNCC	4 cut(s)	535, 632, 679, 809
SchI	GAGTC	2 cut(s)	602, 1206
ScrFI	CCNGG	2 cut(s)	650, 1194
SfaNI	GCATC	1 cut(s)	661
SfcI	CTRYAG	2 cut(s)	12, 1059
SfuI	TTCGAA	1 cut(s)	1081
SinI	GGWCC	3 cut(s)	535, 632, 809
SmlI	CTYRAG	1 cut(s)	918
SmoI	CTYRAG	1 cut(s)	918
SsiI	CCGC	5 cut(s)	696, 717, 900, 1024, 1100
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	2 cut(s)	731, 743
StyD4I	CCNGG	2 cut(s)	648, 1192
StyI	CCWWGG	2 cut(s)	926, 1008
TaaI	ACNGT	6 cut(s)	169, 941, 955, 999, 1078, 1128
TaiI	ACGT	2 cut(s)	757, 1052
TaqI	TCGA	3 cut(s)	397, 759, 1081
TatI	WGTACW	1 cut(s)	164
TauI	GCSGC	3 cut(s)	698, 719, 1103
TfiI	GAWTC	6 cut(s)	323, 356, 703, 848, 896, 1083
Tru1I	TTAA	3 cut(s)	57, 81, 768
Tru9I	TTAA	3 cut(s)	57, 81, 768
TscAI	CASTG	5 cut(s)	174, 523, 550, 811, 1081
TseFI	GTSAC	2 cut(s)	34, 490
TseI	GCWGC	1 cut(s)	44
Tsp45I	GTSAC	2 cut(s)	34, 490
TspDTI	ATGAA	3 cut(s)	17, 167, 1056
TspRI	CASTG	5 cut(s)	174, 523, 550, 811, 1081
VpaK11BI	GGWCC	3 cut(s)	535, 632, 809
VspI	ATTAAT	2 cut(s)	57, 768
XapI	RAATTY	6 cut(s)	112, 410, 419, 449, 502, 817
XceI	RCATGY	2 cut(s)	299, 1189
XmnI	GAANNNNTTC	2 cut(s)	449, 1145
XspI	CTAG	2 cut(s)	731, 743
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.