Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003287

Physical Location & Seq

Genomic Coordinates Forward (+)

35117172 .. 35120526

Gene Structure 3355 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGCTTGCAAGTTTGGTAAGGAAAGTTTCAACGGTGAGCAACAAGTTAATTAAGCACAGGAATATATGGTTTTATTCTTATACACTGGCGCAGGTCAGTGCCTTTAGGAGAGGACTTCTCCCAACAAAGATGCAATCTGATGCTAAAACTAGCTACTTGCCCTCGTCAAAAACCTCTACTGCTAATTCCTCTGAAATGACTTATCCCAAACAACCTGCCCACAACTCAACTGGGGAAAAGACTCCAAAGAGGCTTCTCGTAACCAAAAGTAATTCTCCCACTCCAACTAGGAAGCGGATCAGCCCCAAGCTTTTGATAGCATTGGAGGCAGAATTGATGACTGTGATACAGGAAGCAAAACATCTGATTTCTTCCCCCGCCTTTTCTCCACACTTTTCTTCCACTGACCCAGGAAAACTTAAAGGAGCCGTAGACATCATTCAAAGCATTCTAAAGTGTGACATTGAAGCCTTACTGGACAAACAGTGTTACAAAGAATTGAAAGAAGCTTTCAAGTATCTGTGCTCTATTGGTTTTTTTGATCCAATTATGGTCCTAAGACTTGACCGGATGCTTAACGATGTGGAGACTGAACTACCGCACTATAAAGAAGCTATAGATGAATGCGTTACAGGCCGAGAACAGGCAAAGGACCTTCAACATGCACTAAAATCTCTGAAAGCTAAGCTGGAGGCTGCTTGTGCTACAAAACCTAGAATTAGTGAACTTGAAAATGAGCTGCATGATCTTAATGAGCAAATTGAGGCTCTTCAGGCTCAGTTTGCAGATTGTCAGAGCCAGAGAGAAGCCCTTGAGGCTAATTTGGATGCTGAACTGGATAAGCTTCATCCAGAAAAGGAGGCACTCCAGGGTAAATGCAAGTTGTTTACTGCTTTCAAGGCAAGATTGCCAGAAATGAAGAATCGTATCAACGCGGGGATTGGCGTGTGGGAAGCCTTTAAGGCAGCTTTGAATATCCAATTTAGAGGTTTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

332

Amino Acids

37.36

Weight (kDa)

8.99

Isoelectric Point (pI)

42.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11591
fragaria_vesca	FvH4_2g20411 FvH4_2g29931 FvH4_3g14181 FvH4_4g00781 FvH4_4g12541 FvH4_5g22143 FvH4_7g24581
pyrus_communis	pycom04g03170 pycom05g18080 pycom12g05030 pycom13g18540
rosa_chinensis	RchiOBHm_Chr1g0313681 RchiOBHm_Chr1g0344501 RchiOBHm_Chr2g0157511
rosa_laevigata	RLG00000008144 RLG00000008360
rosa_multiflora	Rmu_sc0003765.1_g000035 Rmu_sc0004343.1_g000026 Rmu_sc0006087.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038680 Rroxscaffold_3G00247490 Rroxscaffold_4G00315330 Rroxscaffold_5G00355970 Rroxscaffold_7G00214090
rosa_rugosa	Rorug04G0109300 Rorug04G0109400
rosa_samantha	Rh1AG403200 Rh4AG167500 Rh4BG164600 Rh4CG179400 Rh4DG162300
rosa_wichuraiana	Rw4G013620 Rw4G013850 Rw4G013950 Rw6G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	82, 223
AccI	GTMKAC	1 cut(s)	432
AccII	CGCG	1 cut(s)	935
AciI	CCGC	4 cut(s)	295, 378, 599, 935
AclWI	GGATC	2 cut(s)	305, 536
AcuI	CTGAAG	1 cut(s)	755
AfiI	CCNNNNNNNGG	1 cut(s)	643
AgsI	TTSAA	9 cut(s)	30, 443, 467, 502, 514, 659, 731, 898, 973
AjnI	CCWGG	2 cut(s)	409, 867
AluBI	AGCT	9 cut(s)	153, 310, 509, 614, 683, 688, 739, 844, 968
AluI	AGCT	9 cut(s)	153, 310, 509, 614, 683, 688, 739, 844, 968
Alw21I	GWGCWC	1 cut(s)	527
Alw26I	GTCTC	1 cut(s)	581
AlwI	GGATC	2 cut(s)	305, 536
AoxI	GGCC	1 cut(s)	634
ApeKI	GCWGC	3 cut(s)	695, 739, 965
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	553, 652
AsuHPI	GGTGA	1 cut(s)	46
AvaII	GGWCC	2 cut(s)	553, 652
Bbv12I	GWGCWC	1 cut(s)	527
BbvI	GCAGC	3 cut(s)	682, 726, 977
BceAI	ACGGC	1 cut(s)	413
BciT130I	CCWGG	2 cut(s)	411, 869
BcoDI	GTCTC	1 cut(s)	581
BfaI	CTAG	3 cut(s)	150, 288, 714
BfmI	CTRYAG	1 cut(s)	615
BfuAI	ACCTGC	2 cut(s)	82, 223
BglI	GCCNNNNNGGC	2 cut(s)	815, 962
BisI	GCNGC	3 cut(s)	696, 740, 966
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	3 cut(s)	697, 741, 967
Bme1390I	CCNGG	2 cut(s)	411, 869
Bme18I	GGWCC	2 cut(s)	553, 652
BmgT120I	GGNCC	2 cut(s)	553, 652
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	2 cut(s)	411, 869
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	4 cut(s)	120, 130, 561, 817
BmuI	ACTGGG	1 cut(s)	240
BplI	GAGNNNNNCTC	2 cut(s)	102, 134
BpmI	CTGGAG	2 cut(s)	710, 851
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuEI	CTTGAG	1 cut(s)	833
BsaJI	CCNNGG	2 cut(s)	409, 868
BsaWI	WCCGGW	1 cut(s)	567
Bsc4I	CCNNNNNNNGG	1 cut(s)	643
Bse1I	ACTGG	4 cut(s)	90, 235, 480, 840
BseBI	CCWGG	2 cut(s)	411, 869
BseDI	CCNNGG	2 cut(s)	409, 868
BseGI	GGATG	3 cut(s)	576, 832, 847
BseLI	CCNNNNNNNGG	1 cut(s)	643
BseMII	CTCAG	1 cut(s)	791
BseNI	ACTGG	4 cut(s)	90, 235, 480, 840
BseXI	GCAGC	3 cut(s)	682, 726, 977
Bsh1236I	CGCG	1 cut(s)	935
BshFI	GGCC	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	527
BsiSI	CCGG	1 cut(s)	568
BslI	CCNNNNNNNGG	1 cut(s)	643
BsmAI	GTCTC	1 cut(s)	581
BsmI	GAATGC	2 cut(s)	447, 629
BsnI	GGCC	1 cut(s)	636
Bsp1286I	GDGCHC	1 cut(s)	527
Bsp143I	GATC	3 cut(s)	297, 541, 745
Bsp1720I	GCTNAGC	1 cut(s)	684
BspACI	CCGC	4 cut(s)	295, 378, 599, 935
BspANI	GGCC	1 cut(s)	636
BspCNI	CTCAG	1 cut(s)	790
BspFNI	CGCG	1 cut(s)	935
BspLI	GGNNCC	1 cut(s)	427
BspMI	ACCTGC	2 cut(s)	82, 223
BspPI	GGATC	2 cut(s)	305, 536
BspQI	GCTCTTC	1 cut(s)	774
BsrI	ACTGG	4 cut(s)	90, 235, 480, 840
BssECI	CCNNGG	2 cut(s)	409, 868
BssMI	GATC	3 cut(s)	297, 541, 745
Bst2UI	CCWGG	2 cut(s)	411, 869
Bst4CI	ACNGT	3 cut(s)	34, 343, 486
Bst6I	CTCTTC	1 cut(s)	774
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	557, 684, 777
BstF5I	GGATG	3 cut(s)	576, 832, 847
BstFNI	CGCG	1 cut(s)	935
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	3 cut(s)	300, 544, 748
BstMAI	GTCTC	1 cut(s)	581
BstMBI	GATC	3 cut(s)	297, 541, 745
BstMWI	GCNNNNNNNGC	8 cut(s)	326, 633, 701, 773, 782, 815, 899, 962
BstNI	CCWGG	2 cut(s)	411, 869
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	2 cut(s)	409, 867
BstSFI	CTRYAG	1 cut(s)	615
BstUI	CGCG	1 cut(s)	935
BstV1I	GCAGC	3 cut(s)	682, 726, 977
BsuRI	GGCC	1 cut(s)	636
BtsCI	GGATG	3 cut(s)	576, 832, 847
BtsIMutI	CAGTG	4 cut(s)	83, 103, 402, 491
BveI	ACCTGC	2 cut(s)	82, 223
Cac8I	GCNNGC	1 cut(s)	6
CfoI	GCGC	1 cut(s)	91
Cfr13I	GGNCC	2 cut(s)	553, 652
CviAII	CATG	2 cut(s)	662, 743
DdeI	CTNAG	3 cut(s)	557, 684, 777
DpnI	GATC	3 cut(s)	299, 543, 747
DpnII	GATC	3 cut(s)	297, 541, 745
Eam1104I	CTCTTC	1 cut(s)	774
EarI	CTCTTC	1 cut(s)	774
Eco47I	GGWCC	2 cut(s)	553, 652
Eco57I	CTGAAG	1 cut(s)	755
EcoO109I	RGGNCCY	1 cut(s)	652
EcoRII	CCWGG	2 cut(s)	409, 867
FaeI	CATG	2 cut(s)	665, 746
FaiI	YATR	8 cut(s)	65, 67, 81, 551, 606, 617, 663, 744
FatI	CATG	2 cut(s)	661, 742
FauI	CCCGC	2 cut(s)	385, 928
FblI	GTMKAC	1 cut(s)	432
Fnu4HI	GCNGC	3 cut(s)	696, 740, 966
FokI	GGATG	3 cut(s)	583, 834, 839
Fsp4HI	GCNGC	3 cut(s)	696, 740, 966
FspBI	CTAG	3 cut(s)	150, 288, 714
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	3 cut(s)	696, 740, 966
GsuI	CTGGAG	2 cut(s)	710, 851
HaeIII	GGCC	1 cut(s)	636
HapII	CCGG	1 cut(s)	568
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	665, 746
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HindIII	AAGCTT	3 cut(s)	308, 507, 842
HinfI	GANTC	2 cut(s)	241, 922
HpaII	CCGG	1 cut(s)	568
HphI	GGTGA	1 cut(s)	46
Hpy166II	GTNNAC	3 cut(s)	433, 725, 888
Hpy188I	TCNGA	5 cut(s)	139, 193, 366, 678, 795
Hpy188III	TCNNGA	1 cut(s)	851
Hpy8I	GTNNAC	3 cut(s)	433, 725, 888
HpyAV	CCTTC	1 cut(s)	665
HpyCH4III	ACNGT	3 cut(s)	34, 343, 486
HpyCH4V	TGCA	6 cut(s)	8, 133, 665, 742, 785, 879
HpyF10VI	GCNNNNNNNGC	8 cut(s)	326, 633, 701, 773, 782, 815, 899, 962
HpyF3I	CTNAG	3 cut(s)	557, 684, 777
Hsp92II	CATG	2 cut(s)	665, 746
HspAI	GCGC	1 cut(s)	89
Kzo9I	GATC	3 cut(s)	297, 541, 745
LguI	GCTCTTC	1 cut(s)	774
LmnI	GCTCC	1 cut(s)	425
Lsp1109I	GCAGC	3 cut(s)	682, 726, 977
LweI	GCATC	4 cut(s)	120, 130, 561, 817
MaeI	CTAG	3 cut(s)	150, 288, 714
MaeIII	GTNAC	4 cut(s)	259, 458, 488, 628
MalI	GATC	3 cut(s)	299, 543, 747
MboI	GATC	3 cut(s)	297, 541, 745
MboII	GAAGA	4 cut(s)	363, 390, 761, 931
MhlI	GDGCHC	1 cut(s)	527
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	308
MseI	TTAA	6 cut(s)	47, 51, 420, 576, 750, 960
MspI	CCGG	1 cut(s)	568
MspR9I	CCNGG	2 cut(s)	411, 869
Mva1269I	GAATGC	2 cut(s)	447, 629
MvaI	CCWGG	2 cut(s)	411, 869
MvnI	CGCG	1 cut(s)	935
MwoI	GCNNNNNNNGC	8 cut(s)	326, 633, 701, 773, 782, 815, 899, 962
NdeII	GATC	3 cut(s)	297, 541, 745
NlaIII	CATG	2 cut(s)	665, 746
NlaIV	GGNNCC	1 cut(s)	427
NmeAIII	GCCGAG	1 cut(s)	662
NmuCI	GTSAC	1 cut(s)	458
NspI	RCATGY	1 cut(s)	665
PacI	TTAATTAA	1 cut(s)	51
PciSI	GCTCTTC	1 cut(s)	774
PctI	GAATGC	2 cut(s)	447, 629
PfeI	GAWTC	1 cut(s)	922
PkrI	GCNGC	3 cut(s)	697, 741, 967
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PpuMI	RGGWCCY	1 cut(s)	652
Psp5II	RGGWCCY	1 cut(s)	652
Psp6I	CCWGG	2 cut(s)	409, 867
PspGI	CCWGG	2 cut(s)	409, 867
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	2 cut(s)	553, 652
PspPPI	RGGWCCY	1 cut(s)	652
SapI	GCTCTTC	1 cut(s)	774
SaqAI	TTAA	6 cut(s)	47, 51, 420, 576, 750, 960
SatI	GCNGC	3 cut(s)	696, 740, 966
Sau3AI	GATC	3 cut(s)	297, 541, 745
Sau96I	GGNCC	2 cut(s)	553, 652
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	2 cut(s)	411, 869
SduI	GDGCHC	1 cut(s)	527
SfaNI	GCATC	4 cut(s)	120, 130, 561, 817
SfcI	CTRYAG	1 cut(s)	615
SinI	GGWCC	2 cut(s)	553, 652
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
SsiI	CCGC	4 cut(s)	295, 378, 599, 935
SspMI	CTAG	3 cut(s)	150, 288, 714
StyD4I	CCNGG	2 cut(s)	409, 867
TaaI	ACNGT	3 cut(s)	34, 343, 486
TfiI	GAWTC	1 cut(s)	922
Tru1I	TTAA	6 cut(s)	47, 51, 420, 576, 750, 960
Tru9I	TTAA	6 cut(s)	47, 51, 420, 576, 750, 960
TscAI	CASTG	4 cut(s)	90, 103, 409, 491
TseFI	GTSAC	1 cut(s)	458
TseI	GCWGC	3 cut(s)	695, 739, 965
Tsp45I	GTSAC	1 cut(s)	458
TspDTI	ATGAA	3 cut(s)	636, 836, 932
TspRI	CASTG	4 cut(s)	90, 103, 409, 491
VpaK11BI	GGWCC	2 cut(s)	553, 652
XceI	RCATGY	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	432
XspI	CTAG	3 cut(s)	150, 288, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.