Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003287

Physical Location & Seq

Genomic Coordinates Forward (+)

39024914 .. 39028120

Gene Structure 3207 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG179400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAAGGTGCAATCTTTGTGCCTGCTCCGTCATCTCCTTTATCATCATCAACTTCTCTATCGATTGTGATTTTGACCCAAGATGAATTGAAGAAAATCGCGGACTACAAGGCCGTCGAGTCTGGCATGGTTCTTGACAGGGTGCCCAGATCATTTTCAAGTGTGCTGGGATTGAAAAGAAAGGACTTAGGGGATTACAACACCCCCAGATCTCAGCTCACTGGTTATCTGTCTGTTAAGGAAATGACTTATCCCAAACAACCTGCCCACAACTCAACTGGGGAAAAGAATCCAAAGAGGCTTCTCGTAACCAAAAGTAATTCTCCCACTCCAACTAGGAAGCGGATCAGCCCCAAGCTTTCGATAGCATTGGAGGCAGAATTGATGACTGTGATACAGGAGGCAAAACATCTGATTTCTTCCCCCGCCTTTTCTCCACACTTTTCTTCCACTGACCCAGGAAAACTTCAAGGAGCCATAGACATCGTTCAAAGCATTCTAAAGTGTGACATTGAAGCCTTACTGGACAAACAGTGTTACAAAGAATTGAAAGAAGCTTTCGAGTATCTGTGCTCTATTGGTTTTTTTGATCCAATTATGGTCCTAAGACTTGACCGGATGCTTAACGATGTGGAGACTGAACTACCGCACTATAAAGAAGCTATAGATGAATGTGTTACAGGCCGAGAACAGGCAAAGGACCTTCAACATGCACTAAAATCTCTGAAAGCTAAGCTGGAGGCTGCTTGTGCTACAAAACCAAGAATTATTGAACTTGAAAATGAGCTGCATGATCTTAATGAGCATATTGAGGCTCTTCAGGCTCAATTTGCAGATTGTCAGAGCCAGAGAGAAGCCCTTGAGGCTAATTTGGATGCTGAACTGGATAAGCTTCATCCAGAAAAGGAGGCACTCCAGGGTAAATGCAAGTTGTTTACTGCTTTCAAGGCAAGATTGCCTGAAATGAAGAATCGTATCAACGCGGGGATTGGTGTGTGGGAAGCCTTTAAGGCAGCTTTGAATATCCAATTTAGAGGTTTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004751 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0007275 GO:0008150 GO:0008219 GO:0009791 GO:0009987 GO:0010228 GO:0016853 GO:0016860 GO:0016861 GO:0022414 GO:0032501 GO:0032502 GO:0044424 GO:0044464 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

ko00030 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00030 map00710 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

Rib_5-P_isom_A

Protein Analysis

348

Amino Acids

38.88

Weight (kDa)

6.53

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003287)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11591
fragaria_vesca	FvH4_2g20411 FvH4_2g29931 FvH4_3g14181 FvH4_4g00781 FvH4_4g12541 FvH4_5g22143 FvH4_7g24581
pyrus_communis	pycom04g03170 pycom05g18080 pycom12g05030 pycom13g18540
rosa_chinensis	RchiOBHm_Chr1g0313681 RchiOBHm_Chr1g0344501 RchiOBHm_Chr2g0157511
rosa_laevigata	RLG00000008144 RLG00000008360
rosa_multiflora	Rmu_sc0003765.1_g000035 Rmu_sc0004343.1_g000026 Rmu_sc0006087.1_g000011
rosa_roxburghii	Rroxscaffold_1G00038680 Rroxscaffold_3G00247490 Rroxscaffold_4G00315330 Rroxscaffold_5G00355970 Rroxscaffold_7G00214090
rosa_rugosa	Rorug04G0109300 Rorug04G0109400
rosa_samantha	Rh1AG403200 Rh4AG167500 Rh4BG164600 Rh4CG179400 Rh4DG162300
rosa_wichuraiana	Rw4G013620 Rw4G013850 Rw4G013950 Rw6G038170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	142
AccII	CGCG	2 cut(s)	101, 983
AciI	CCGC	5 cut(s)	101, 343, 426, 647, 983
AclWI	GGATC	2 cut(s)	353, 584
AcuI	CTGAAG	1 cut(s)	803
AfiI	CCNNNNNNNGG	1 cut(s)	691
AjnI	CCWGG	2 cut(s)	457, 915
AluBI	AGCT	9 cut(s)	217, 358, 557, 662, 731, 736, 787, 892, 1016
AluI	AGCT	9 cut(s)	217, 358, 557, 662, 731, 736, 787, 892, 1016
Alw21I	GWGCWC	1 cut(s)	575
Alw26I	GTCTC	1 cut(s)	629
AlwI	GGATC	2 cut(s)	353, 584
AoxI	GGCC	2 cut(s)	111, 682
ApeKI	GCWGC	3 cut(s)	743, 787, 1013
AspS9I	GGNCC	2 cut(s)	601, 700
AvaII	GGWCC	2 cut(s)	601, 700
BaeGI	GKGCMC	1 cut(s)	147
BanI	GGYRCC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	575
BbvI	GCAGC	3 cut(s)	730, 774, 1025
BceAI	ACGGC	1 cut(s)	98
BciT130I	CCWGG	2 cut(s)	459, 917
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	1 cut(s)	336
BfmI	CTRYAG	1 cut(s)	663
BfuAI	ACCTGC	1 cut(s)	271
BglI	GCCNNNNNGGC	2 cut(s)	863, 1010
BglII	AGATCT	1 cut(s)	209
BisI	GCNGC	3 cut(s)	744, 788, 1014
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	3 cut(s)	745, 789, 1015
Bme1390I	CCNGG	2 cut(s)	459, 917
Bme18I	GGWCC	2 cut(s)	601, 700
BmgT120I	GGNCC	2 cut(s)	601, 700
BmiI	GGNNCC	2 cut(s)	144, 475
BmrFI	CCNGG	2 cut(s)	459, 917
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	2 cut(s)	609, 865
BmuI	ACTGGG	1 cut(s)	288
BpmI	CTGGAG	2 cut(s)	758, 899
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	881
Bsa29I	ATCGAT	1 cut(s)	62
BsaJI	CCNNGG	2 cut(s)	457, 916
BsaWI	WCCGGW	1 cut(s)	615
Bsc4I	CCNNNNNNNGG	1 cut(s)	691
Bse1I	ACTGG	4 cut(s)	226, 283, 528, 888
BseBI	CCWGG	2 cut(s)	459, 917
BseCI	ATCGAT	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	457, 916
BseGI	GGATG	3 cut(s)	624, 880, 895
BseLI	CCNNNNNNNGG	1 cut(s)	691
BseMII	CTCAG	1 cut(s)	227
BseNI	ACTGG	4 cut(s)	226, 283, 528, 888
BseSI	GKGCMC	1 cut(s)	147
BseXI	GCAGC	3 cut(s)	730, 774, 1025
BseYI	CCCAGC	1 cut(s)	166
Bsh1236I	CGCG	2 cut(s)	101, 983
BshFI	GGCC	2 cut(s)	113, 684
BshNI	GGYRCC	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	575
BsiSI	CCGG	1 cut(s)	616
BslI	CCNNNNNNNGG	1 cut(s)	691
BsmAI	GTCTC	1 cut(s)	629
BsmI	GAATGC	1 cut(s)	495
BsnI	GGCC	2 cut(s)	113, 684
Bsp1286I	GDGCHC	2 cut(s)	147, 575
Bsp143I	GATC	5 cut(s)	149, 209, 345, 589, 793
Bsp1720I	GCTNAGC	1 cut(s)	732
BspACI	CCGC	5 cut(s)	101, 343, 426, 647, 983
BspANI	GGCC	2 cut(s)	113, 684
BspCNI	CTCAG	1 cut(s)	226
BspDI	ATCGAT	1 cut(s)	62
BspFNI	CGCG	2 cut(s)	101, 983
BspLI	GGNNCC	2 cut(s)	144, 475
BspMI	ACCTGC	1 cut(s)	271
BspPI	GGATC	2 cut(s)	353, 584
BspQI	GCTCTTC	1 cut(s)	822
BspT107I	GGYRCC	1 cut(s)	142
BsrI	ACTGG	4 cut(s)	226, 283, 528, 888
BssECI	CCNNGG	2 cut(s)	457, 916
BssMI	GATC	5 cut(s)	149, 209, 345, 589, 793
Bst2UI	CCWGG	2 cut(s)	459, 917
Bst4CI	ACNGT	2 cut(s)	391, 534
Bst6I	CTCTTC	1 cut(s)	822
BstC8I	GCNNGC	1 cut(s)	24
BstDEI	CTNAG	4 cut(s)	187, 213, 605, 732
BstF5I	GGATG	3 cut(s)	624, 880, 895
BstFNI	CGCG	2 cut(s)	101, 983
BstKTI	GATC	5 cut(s)	152, 212, 348, 592, 796
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	5 cut(s)	149, 209, 345, 589, 793
BstMWI	GCNNNNNNNGC	7 cut(s)	374, 749, 821, 830, 863, 947, 1010
BstNI	CCWGG	2 cut(s)	459, 917
BstNSI	RCATGY	1 cut(s)	713
BstSCI	CCNGG	2 cut(s)	457, 915
BstSFI	CTRYAG	1 cut(s)	663
BstSLI	GKGCMC	1 cut(s)	147
BstUI	CGCG	2 cut(s)	101, 983
BstV1I	GCAGC	3 cut(s)	730, 774, 1025
BstX2I	RGATCY	1 cut(s)	209
BstYI	RGATCY	1 cut(s)	209
Bsu15I	ATCGAT	1 cut(s)	62
BsuRI	GGCC	2 cut(s)	113, 684
BsuTUI	ATCGAT	1 cut(s)	62
BtsCI	GGATG	3 cut(s)	624, 880, 895
BtsIMutI	CAGTG	3 cut(s)	219, 450, 539
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	24
Cfr13I	GGNCC	2 cut(s)	601, 700
ClaI	ATCGAT	1 cut(s)	62
CviAII	CATG	3 cut(s)	127, 710, 791
DdeI	CTNAG	4 cut(s)	187, 213, 605, 732
DpnI	GATC	5 cut(s)	151, 211, 347, 591, 795
DpnII	GATC	5 cut(s)	149, 209, 345, 589, 793
Eam1104I	CTCTTC	1 cut(s)	822
EarI	CTCTTC	1 cut(s)	822
Eco47I	GGWCC	2 cut(s)	601, 700
Eco57I	CTGAAG	1 cut(s)	803
EcoO109I	RGGNCCY	1 cut(s)	700
EcoRII	CCWGG	2 cut(s)	457, 915
FaeI	CATG	3 cut(s)	130, 713, 794
FaiI	YATR	8 cut(s)	128, 479, 599, 654, 665, 711, 792, 807
FatI	CATG	3 cut(s)	126, 709, 790
FauI	CCCGC	2 cut(s)	433, 976
Fnu4HI	GCNGC	3 cut(s)	744, 788, 1014
FokI	GGATG	3 cut(s)	631, 882, 887
Fsp4HI	GCNGC	3 cut(s)	744, 788, 1014
FspBI	CTAG	1 cut(s)	336
GluI	GCNGC	3 cut(s)	744, 788, 1014
GsaI	CCCAGC	1 cut(s)	170
GsuI	CTGGAG	2 cut(s)	758, 899
HaeIII	GGCC	2 cut(s)	113, 684
HapII	CCGG	1 cut(s)	616
Hin1II	CATG	3 cut(s)	130, 713, 794
HindIII	AAGCTT	3 cut(s)	356, 555, 890
HinfI	GANTC	3 cut(s)	119, 289, 970
HpaII	CCGG	1 cut(s)	616
Hpy166II	GTNNAC	1 cut(s)	936
Hpy188I	TCNGA	3 cut(s)	414, 726, 843
Hpy188III	TCNNGA	2 cut(s)	134, 899
Hpy8I	GTNNAC	1 cut(s)	936
Hpy99I	CGWCG	1 cut(s)	119
HpyAV	CCTTC	1 cut(s)	713
HpyCH4III	ACNGT	2 cut(s)	391, 534
HpyCH4V	TGCA	5 cut(s)	11, 713, 790, 833, 927
HpyF10VI	GCNNNNNNNGC	7 cut(s)	374, 749, 821, 830, 863, 947, 1010
HpyF3I	CTNAG	4 cut(s)	187, 213, 605, 732
Hsp92II	CATG	3 cut(s)	130, 713, 794
Kzo9I	GATC	5 cut(s)	149, 209, 345, 589, 793
LguI	GCTCTTC	1 cut(s)	822
LmnI	GCTCC	2 cut(s)	31, 473
Lsp1109I	GCAGC	3 cut(s)	730, 774, 1025
LweI	GCATC	2 cut(s)	609, 865
MaeI	CTAG	1 cut(s)	336
MaeIII	GTNAC	4 cut(s)	307, 506, 536, 676
MalI	GATC	5 cut(s)	151, 211, 347, 591, 795
MboI	GATC	5 cut(s)	149, 209, 345, 589, 793
MboII	GAAGA	5 cut(s)	103, 411, 438, 809, 979
MflI	RGATCY	1 cut(s)	209
MhlI	GDGCHC	2 cut(s)	147, 575
MluCI	AATT	9 cut(s)	86, 319, 380, 545, 594, 765, 827, 868, 1028
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	356
MnlI	CCTC	8 cut(s)	291, 367, 394, 733, 805, 856, 901, 1028
MseI	TTAA	4 cut(s)	237, 624, 798, 1008
MspI	CCGG	1 cut(s)	616
MspR9I	CCNGG	2 cut(s)	459, 917
Mva1269I	GAATGC	1 cut(s)	495
MvaI	CCWGG	2 cut(s)	459, 917
MvnI	CGCG	2 cut(s)	101, 983
MwoI	GCNNNNNNNGC	7 cut(s)	374, 749, 821, 830, 863, 947, 1010
NdeII	GATC	5 cut(s)	149, 209, 345, 589, 793
NlaIII	CATG	3 cut(s)	130, 713, 794
NlaIV	GGNNCC	2 cut(s)	144, 475
NmeAIII	GCCGAG	1 cut(s)	710
NmuCI	GTSAC	1 cut(s)	506
NspI	RCATGY	1 cut(s)	713
PciSI	GCTCTTC	1 cut(s)	822
PctI	GAATGC	1 cut(s)	495
PfeI	GAWTC	2 cut(s)	289, 970
PkrI	GCNGC	3 cut(s)	745, 789, 1015
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PpuMI	RGGWCCY	1 cut(s)	700
Psp5II	RGGWCCY	1 cut(s)	700
Psp6I	CCWGG	2 cut(s)	457, 915
PspFI	CCCAGC	1 cut(s)	166
PspGI	CCWGG	2 cut(s)	457, 915
PspN4I	GGNNCC	2 cut(s)	144, 475
PspPI	GGNCC	2 cut(s)	601, 700
PspPPI	RGGWCCY	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	209
SapI	GCTCTTC	1 cut(s)	822
SaqAI	TTAA	4 cut(s)	237, 624, 798, 1008
SatI	GCNGC	3 cut(s)	744, 788, 1014
Sau3AI	GATC	5 cut(s)	149, 209, 345, 589, 793
Sau96I	GGNCC	2 cut(s)	601, 700
SchI	GAGTC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	459, 917
SduI	GDGCHC	2 cut(s)	147, 575
SfaNI	GCATC	2 cut(s)	609, 865
SfcI	CTRYAG	1 cut(s)	663
SinI	GGWCC	2 cut(s)	601, 700
SmlI	CTYRAG	1 cut(s)	860
SmoI	CTYRAG	1 cut(s)	860
Sse9I	AATT	9 cut(s)	86, 319, 380, 545, 594, 765, 827, 868, 1028
SsiI	CCGC	5 cut(s)	101, 343, 426, 647, 983
SspMI	CTAG	1 cut(s)	336
StyD4I	CCNGG	2 cut(s)	457, 915
TaaI	ACNGT	2 cut(s)	391, 534
TaqI	TCGA	4 cut(s)	62, 117, 362, 561
TasI	AATT	9 cut(s)	86, 319, 380, 545, 594, 765, 827, 868, 1028
TfiI	GAWTC	2 cut(s)	289, 970
Tru1I	TTAA	4 cut(s)	237, 624, 798, 1008
Tru9I	TTAA	4 cut(s)	237, 624, 798, 1008
TscAI	CASTG	3 cut(s)	226, 457, 539
TseFI	GTSAC	1 cut(s)	506
TseI	GCWGC	3 cut(s)	743, 787, 1013
Tsp45I	GTSAC	1 cut(s)	506
TspDTI	ATGAA	4 cut(s)	99, 684, 884, 980
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	3 cut(s)	226, 457, 539
VpaK11BI	GGWCC	2 cut(s)	601, 700
XceI	RCATGY	1 cut(s)	713
XcmI	CCANNNNNNNNNTGG	1 cut(s)	275
XspI	CTAG	1 cut(s)	336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.